Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4343

Experiment: m.b. Thallium(I) acetate 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4342 and Echvi_4343 are separated by 37 nucleotidesEchvi_4343 and Echvi_4344 are separated by 50 nucleotides Echvi_4342: Echvi_4342 - transporter, SSS family, at 5,191,980 to 5,194,691 _4342 Echvi_4343: Echvi_4343 - Dihydrodipicolinate synthase/N-acetylneuraminate lyase, at 5,194,729 to 5,195,658 _4343 Echvi_4344: Echvi_4344 - SusD family., at 5,195,709 to 5,197,202 _4344 Position (kb) 5194 5195 5196Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5193.735 kb on - strand, within Echvi_4342at 5193.736 kb on + strand, within Echvi_4342at 5193.817 kb on + strand, within Echvi_4342at 5193.818 kb on - strand, within Echvi_4342at 5193.869 kb on + strand, within Echvi_4342at 5193.870 kb on - strand, within Echvi_4342at 5193.895 kb on - strand, within Echvi_4342at 5193.895 kb on - strand, within Echvi_4342at 5193.934 kb on + strand, within Echvi_4342at 5193.940 kb on + strand, within Echvi_4342at 5193.940 kb on + strand, within Echvi_4342at 5193.952 kb on + strand, within Echvi_4342at 5193.953 kb on - strand, within Echvi_4342at 5193.953 kb on - strand, within Echvi_4342at 5193.963 kb on + strand, within Echvi_4342at 5194.173 kb on + strand, within Echvi_4342at 5194.174 kb on - strand, within Echvi_4342at 5194.174 kb on - strand, within Echvi_4342at 5194.222 kb on + strand, within Echvi_4342at 5194.227 kb on + strand, within Echvi_4342at 5194.242 kb on + strand, within Echvi_4342at 5194.264 kb on - strand, within Echvi_4342at 5194.421 kb on - strandat 5194.659 kb on + strandat 5194.671 kb on - strandat 5194.674 kb on - strandat 5194.675 kb on + strandat 5194.675 kb on + strandat 5194.675 kb on + strandat 5194.675 kb on + strandat 5194.675 kb on + strandat 5194.675 kb on + strandat 5194.675 kb on + strandat 5194.676 kb on - strandat 5194.676 kb on - strandat 5194.676 kb on - strandat 5194.676 kb on - strandat 5194.676 kb on - strandat 5194.676 kb on - strandat 5194.680 kb on + strandat 5194.680 kb on + strandat 5194.680 kb on + strandat 5194.680 kb on + strandat 5194.682 kb on + strandat 5194.682 kb on + strandat 5194.682 kb on + strandat 5194.682 kb on + strandat 5194.682 kb on + strandat 5194.683 kb on - strandat 5194.683 kb on - strandat 5194.719 kb on + strandat 5194.719 kb on + strandat 5194.719 kb on + strandat 5194.719 kb on + strandat 5194.719 kb on + strandat 5194.719 kb on + strandat 5194.750 kb on - strandat 5194.752 kb on + strandat 5194.753 kb on - strandat 5194.753 kb on - strandat 5194.755 kb on + strandat 5194.755 kb on + strandat 5194.756 kb on - strandat 5194.756 kb on - strandat 5194.757 kb on + strandat 5194.758 kb on - strandat 5194.803 kb on - strandat 5194.803 kb on - strandat 5194.898 kb on + strand, within Echvi_4343at 5194.898 kb on + strand, within Echvi_4343at 5194.899 kb on - strand, within Echvi_4343at 5195.009 kb on + strand, within Echvi_4343at 5195.010 kb on - strand, within Echvi_4343at 5195.013 kb on + strand, within Echvi_4343at 5195.013 kb on + strand, within Echvi_4343at 5195.013 kb on + strand, within Echvi_4343at 5195.014 kb on - strand, within Echvi_4343at 5195.014 kb on - strand, within Echvi_4343at 5195.014 kb on - strand, within Echvi_4343at 5195.015 kb on + strand, within Echvi_4343at 5195.015 kb on + strand, within Echvi_4343at 5195.016 kb on - strand, within Echvi_4343at 5195.016 kb on - strand, within Echvi_4343at 5195.016 kb on - strand, within Echvi_4343at 5195.016 kb on - strand, within Echvi_4343at 5195.093 kb on + strand, within Echvi_4343at 5195.093 kb on + strand, within Echvi_4343at 5195.094 kb on - strand, within Echvi_4343at 5195.125 kb on - strand, within Echvi_4343at 5195.142 kb on + strand, within Echvi_4343at 5195.150 kb on + strand, within Echvi_4343at 5195.151 kb on - strand, within Echvi_4343at 5195.185 kb on + strand, within Echvi_4343at 5195.185 kb on + strand, within Echvi_4343at 5195.185 kb on + strand, within Echvi_4343at 5195.186 kb on - strand, within Echvi_4343at 5195.219 kb on - strand, within Echvi_4343at 5195.244 kb on - strand, within Echvi_4343at 5195.291 kb on + strand, within Echvi_4343at 5195.291 kb on + strand, within Echvi_4343at 5195.291 kb on + strand, within Echvi_4343at 5195.296 kb on + strand, within Echvi_4343at 5195.327 kb on + strand, within Echvi_4343at 5195.327 kb on + strand, within Echvi_4343at 5195.327 kb on + strand, within Echvi_4343at 5195.328 kb on - strand, within Echvi_4343at 5195.328 kb on - strand, within Echvi_4343at 5195.328 kb on - strand, within Echvi_4343at 5195.330 kb on + strand, within Echvi_4343at 5195.330 kb on + strand, within Echvi_4343at 5195.331 kb on - strand, within Echvi_4343at 5195.428 kb on + strand, within Echvi_4343at 5195.429 kb on - strand, within Echvi_4343at 5195.489 kb on + strand, within Echvi_4343at 5195.490 kb on - strand, within Echvi_4343at 5195.541 kb on + strand, within Echvi_4343at 5195.542 kb on - strand, within Echvi_4343at 5195.542 kb on - strand, within Echvi_4343at 5195.665 kb on + strandat 5195.759 kb on + strandat 5195.788 kb on + strandat 5195.788 kb on + strandat 5195.788 kb on + strandat 5195.789 kb on - strandat 5195.875 kb on + strand, within Echvi_4344at 5195.876 kb on - strand, within Echvi_4344at 5196.059 kb on - strand, within Echvi_4344at 5196.064 kb on + strand, within Echvi_4344at 5196.064 kb on + strand, within Echvi_4344at 5196.065 kb on - strand, within Echvi_4344at 5196.069 kb on + strand, within Echvi_4344at 5196.069 kb on + strand, within Echvi_4344at 5196.105 kb on + strand, within Echvi_4344at 5196.105 kb on + strand, within Echvi_4344at 5196.105 kb on + strand, within Echvi_4344at 5196.105 kb on + strand, within Echvi_4344at 5196.106 kb on - strand, within Echvi_4344at 5196.106 kb on - strand, within Echvi_4344at 5196.109 kb on + strand, within Echvi_4344at 5196.109 kb on + strand, within Echvi_4344at 5196.126 kb on + strand, within Echvi_4344at 5196.129 kb on + strand, within Echvi_4344at 5196.129 kb on + strand, within Echvi_4344at 5196.129 kb on + strand, within Echvi_4344at 5196.129 kb on + strand, within Echvi_4344at 5196.129 kb on + strand, within Echvi_4344at 5196.130 kb on - strand, within Echvi_4344at 5196.130 kb on - strand, within Echvi_4344at 5196.130 kb on - strand, within Echvi_4344at 5196.130 kb on - strand, within Echvi_4344at 5196.130 kb on - strand, within Echvi_4344at 5196.130 kb on - strand, within Echvi_4344at 5196.130 kb on - strand, within Echvi_4344at 5196.130 kb on - strand, within Echvi_4344at 5196.131 kb on + strand, within Echvi_4344at 5196.139 kb on + strand, within Echvi_4344at 5196.140 kb on - strand, within Echvi_4344at 5196.140 kb on - strand, within Echvi_4344at 5196.140 kb on - strand, within Echvi_4344at 5196.180 kb on - strand, within Echvi_4344at 5196.251 kb on + strand, within Echvi_4344at 5196.273 kb on + strand, within Echvi_4344at 5196.286 kb on - strand, within Echvi_4344at 5196.329 kb on - strand, within Echvi_4344at 5196.329 kb on - strand, within Echvi_4344at 5196.329 kb on - strand, within Echvi_4344at 5196.344 kb on - strand, within Echvi_4344at 5196.344 kb on - strand, within Echvi_4344at 5196.344 kb on - strand, within Echvi_4344at 5196.347 kb on + strand, within Echvi_4344at 5196.348 kb on - strand, within Echvi_4344at 5196.422 kb on + strand, within Echvi_4344at 5196.504 kb on - strand, within Echvi_4344at 5196.535 kb on + strand, within Echvi_4344at 5196.535 kb on + strand, within Echvi_4344at 5196.629 kb on + strand, within Echvi_4344at 5196.629 kb on + strand, within Echvi_4344at 5196.630 kb on - strand, within Echvi_4344

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.01 mg/ml
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5,193,735 - Echvi_4342 0.65 -0.9
5,193,736 + Echvi_4342 0.65 -2.1
5,193,817 + Echvi_4342 0.68 +1.9
5,193,818 - Echvi_4342 0.68 +0.0
5,193,869 + Echvi_4342 0.70 -0.1
5,193,870 - Echvi_4342 0.70 +0.2
5,193,895 - Echvi_4342 0.71 +1.9
5,193,895 - Echvi_4342 0.71 -0.4
5,193,934 + Echvi_4342 0.72 +1.5
5,193,940 + Echvi_4342 0.72 +0.3
5,193,940 + Echvi_4342 0.72 +0.4
5,193,952 + Echvi_4342 0.73 +1.7
5,193,953 - Echvi_4342 0.73 +1.5
5,193,953 - Echvi_4342 0.73 +0.3
5,193,963 + Echvi_4342 0.73 +1.8
5,194,173 + Echvi_4342 0.81 +0.0
5,194,174 - Echvi_4342 0.81 +0.8
5,194,174 - Echvi_4342 0.81 +1.6
5,194,222 + Echvi_4342 0.83 -0.2
5,194,227 + Echvi_4342 0.83 +1.2
5,194,242 + Echvi_4342 0.83 +1.3
5,194,264 - Echvi_4342 0.84 -0.2
5,194,421 - -0.5
5,194,659 + +0.6
5,194,671 - +0.1
5,194,674 - +0.7
5,194,675 + +0.8
5,194,675 + -1.4
5,194,675 + +0.4
5,194,675 + +1.4
5,194,675 + +0.2
5,194,675 + -2.5
5,194,675 + +0.3
5,194,676 - +0.9
5,194,676 - +0.4
5,194,676 - -1.2
5,194,676 - +1.0
5,194,676 - +0.7
5,194,676 - -0.1
5,194,680 + +0.4
5,194,680 + +0.9
5,194,680 + -0.8
5,194,680 + +2.5
5,194,682 + -1.4
5,194,682 + +0.7
5,194,682 + -0.3
5,194,682 + -0.2
5,194,682 + -1.2
5,194,683 - -0.6
5,194,683 - +0.8
5,194,719 + +0.1
5,194,719 + -0.5
5,194,719 + +1.3
5,194,719 + +2.5
5,194,719 + +0.1
5,194,719 + +0.4
5,194,750 - -1.0
5,194,752 + +0.8
5,194,753 - +0.2
5,194,753 - -1.7
5,194,755 + +0.1
5,194,755 + +0.3
5,194,756 - +0.4
5,194,756 - -0.5
5,194,757 + -0.1
5,194,758 - -0.5
5,194,803 - +0.2
5,194,803 - -0.6
5,194,898 + Echvi_4343 0.18 +0.3
5,194,898 + Echvi_4343 0.18 -0.2
5,194,899 - Echvi_4343 0.18 +0.6
5,195,009 + Echvi_4343 0.30 +1.5
5,195,010 - Echvi_4343 0.30 -2.3
5,195,013 + Echvi_4343 0.31 -0.2
5,195,013 + Echvi_4343 0.31 +1.6
5,195,013 + Echvi_4343 0.31 -0.4
5,195,014 - Echvi_4343 0.31 -0.4
5,195,014 - Echvi_4343 0.31 +0.8
5,195,014 - Echvi_4343 0.31 -1.2
5,195,015 + Echvi_4343 0.31 +1.3
5,195,015 + Echvi_4343 0.31 +0.8
5,195,016 - Echvi_4343 0.31 +0.5
5,195,016 - Echvi_4343 0.31 -0.9
5,195,016 - Echvi_4343 0.31 -2.3
5,195,016 - Echvi_4343 0.31 -0.7
5,195,093 + Echvi_4343 0.39 +0.2
5,195,093 + Echvi_4343 0.39 +3.6
5,195,094 - Echvi_4343 0.39 +0.9
5,195,125 - Echvi_4343 0.43 -0.5
5,195,142 + Echvi_4343 0.44 -0.1
5,195,150 + Echvi_4343 0.45 +1.5
5,195,151 - Echvi_4343 0.45 -1.0
5,195,185 + Echvi_4343 0.49 -0.5
5,195,185 + Echvi_4343 0.49 +1.2
5,195,185 + Echvi_4343 0.49 +0.6
5,195,186 - Echvi_4343 0.49 -0.3
5,195,219 - Echvi_4343 0.53 -0.7
5,195,244 - Echvi_4343 0.55 +0.8
5,195,291 + Echvi_4343 0.60 +0.2
5,195,291 + Echvi_4343 0.60 -0.3
5,195,291 + Echvi_4343 0.60 -1.7
5,195,296 + Echvi_4343 0.61 +0.1
5,195,327 + Echvi_4343 0.64 +0.6
5,195,327 + Echvi_4343 0.64 -0.5
5,195,327 + Echvi_4343 0.64 +0.1
5,195,328 - Echvi_4343 0.64 +0.1
5,195,328 - Echvi_4343 0.64 -0.4
5,195,328 - Echvi_4343 0.64 -0.0
5,195,330 + Echvi_4343 0.65 -0.8
5,195,330 + Echvi_4343 0.65 +0.5
5,195,331 - Echvi_4343 0.65 +0.5
5,195,428 + Echvi_4343 0.75 +0.0
5,195,429 - Echvi_4343 0.75 +1.6
5,195,489 + Echvi_4343 0.82 -0.5
5,195,490 - Echvi_4343 0.82 -2.3
5,195,541 + Echvi_4343 0.87 -0.9
5,195,542 - Echvi_4343 0.87 +1.0
5,195,542 - Echvi_4343 0.87 +0.6
5,195,665 + -0.4
5,195,759 + -3.4
5,195,788 + -1.3
5,195,788 + -0.0
5,195,788 + -1.0
5,195,789 - +1.7
5,195,875 + Echvi_4344 0.11 +0.4
5,195,876 - Echvi_4344 0.11 -0.2
5,196,059 - Echvi_4344 0.23 -0.5
5,196,064 + Echvi_4344 0.24 -1.4
5,196,064 + Echvi_4344 0.24 -1.5
5,196,065 - Echvi_4344 0.24 +0.4
5,196,069 + Echvi_4344 0.24 -1.5
5,196,069 + Echvi_4344 0.24 +1.0
5,196,105 + Echvi_4344 0.27 -0.4
5,196,105 + Echvi_4344 0.27 -0.0
5,196,105 + Echvi_4344 0.27 +0.1
5,196,105 + Echvi_4344 0.27 +0.7
5,196,106 - Echvi_4344 0.27 +0.1
5,196,106 - Echvi_4344 0.27 +0.3
5,196,109 + Echvi_4344 0.27 -1.7
5,196,109 + Echvi_4344 0.27 +0.1
5,196,126 + Echvi_4344 0.28 +0.7
5,196,129 + Echvi_4344 0.28 -0.7
5,196,129 + Echvi_4344 0.28 -0.0
5,196,129 + Echvi_4344 0.28 +0.9
5,196,129 + Echvi_4344 0.28 -0.4
5,196,129 + Echvi_4344 0.28 +0.7
5,196,130 - Echvi_4344 0.28 +0.8
5,196,130 - Echvi_4344 0.28 -0.3
5,196,130 - Echvi_4344 0.28 -0.5
5,196,130 - Echvi_4344 0.28 -1.3
5,196,130 - Echvi_4344 0.28 -1.3
5,196,130 - Echvi_4344 0.28 -0.7
5,196,130 - Echvi_4344 0.28 -0.2
5,196,130 - Echvi_4344 0.28 -2.4
5,196,131 + Echvi_4344 0.28 -0.3
5,196,139 + Echvi_4344 0.29 -2.5
5,196,140 - Echvi_4344 0.29 -0.5
5,196,140 - Echvi_4344 0.29 -0.0
5,196,140 - Echvi_4344 0.29 -1.1
5,196,180 - Echvi_4344 0.32 -3.2
5,196,251 + Echvi_4344 0.36 -0.6
5,196,273 + Echvi_4344 0.38 -0.2
5,196,286 - Echvi_4344 0.39 -0.4
5,196,329 - Echvi_4344 0.41 -2.2
5,196,329 - Echvi_4344 0.41 -0.7
5,196,329 - Echvi_4344 0.41 +2.0
5,196,344 - Echvi_4344 0.43 +0.8
5,196,344 - Echvi_4344 0.43 -3.0
5,196,344 - Echvi_4344 0.43 +2.5
5,196,347 + Echvi_4344 0.43 -0.0
5,196,348 - Echvi_4344 0.43 -0.7
5,196,422 + Echvi_4344 0.48 -0.3
5,196,504 - Echvi_4344 0.53 -1.3
5,196,535 + Echvi_4344 0.55 +0.5
5,196,535 + Echvi_4344 0.55 +0.4
5,196,629 + Echvi_4344 0.62 -0.0
5,196,629 + Echvi_4344 0.62 -0.2
5,196,630 - Echvi_4344 0.62 -3.0

Or see this region's nucleotide sequence