Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3541

Experiment: m.b. Thallium(I) acetate 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3540 and Echvi_3541 are separated by 11 nucleotidesEchvi_3541 and Echvi_3542 are separated by 272 nucleotides Echvi_3540: Echvi_3540 - TonB-linked outer membrane protein, SusC/RagA family, at 4,194,766 to 4,197,783 _3540 Echvi_3541: Echvi_3541 - SusD family., at 4,197,795 to 4,199,396 _3541 Echvi_3542: Echvi_3542 - Dipeptidyl peptidase IV (DPP IV) N-terminal region./Prolyl oligopeptidase family., at 4,199,669 to 4,201,915 _3542 Position (kb) 4197 4198 4199 4200Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4196.833 kb on + strand, within Echvi_3540at 4196.833 kb on + strand, within Echvi_3540at 4196.836 kb on - strand, within Echvi_3540at 4196.847 kb on - strand, within Echvi_3540at 4196.852 kb on - strand, within Echvi_3540at 4196.853 kb on + strand, within Echvi_3540at 4196.853 kb on + strand, within Echvi_3540at 4196.853 kb on + strand, within Echvi_3540at 4196.853 kb on + strand, within Echvi_3540at 4196.853 kb on + strand, within Echvi_3540at 4196.854 kb on - strand, within Echvi_3540at 4196.891 kb on + strand, within Echvi_3540at 4196.891 kb on + strand, within Echvi_3540at 4196.892 kb on - strand, within Echvi_3540at 4196.892 kb on - strand, within Echvi_3540at 4196.892 kb on - strand, within Echvi_3540at 4196.892 kb on - strand, within Echvi_3540at 4196.893 kb on + strand, within Echvi_3540at 4196.969 kb on + strand, within Echvi_3540at 4196.970 kb on - strand, within Echvi_3540at 4196.970 kb on - strand, within Echvi_3540at 4196.998 kb on - strand, within Echvi_3540at 4197.018 kb on - strand, within Echvi_3540at 4197.052 kb on - strand, within Echvi_3540at 4197.058 kb on - strand, within Echvi_3540at 4197.060 kb on + strand, within Echvi_3540at 4197.060 kb on + strand, within Echvi_3540at 4197.060 kb on + strand, within Echvi_3540at 4197.060 kb on + strand, within Echvi_3540at 4197.061 kb on - strand, within Echvi_3540at 4197.061 kb on - strand, within Echvi_3540at 4197.061 kb on - strand, within Echvi_3540at 4197.061 kb on - strand, within Echvi_3540at 4197.069 kb on + strand, within Echvi_3540at 4197.070 kb on - strand, within Echvi_3540at 4197.070 kb on - strand, within Echvi_3540at 4197.076 kb on - strand, within Echvi_3540at 4197.143 kb on - strand, within Echvi_3540at 4197.145 kb on - strand, within Echvi_3540at 4197.145 kb on - strand, within Echvi_3540at 4197.145 kb on - strand, within Echvi_3540at 4197.166 kb on + strand, within Echvi_3540at 4197.167 kb on - strand, within Echvi_3540at 4197.167 kb on - strand, within Echvi_3540at 4197.185 kb on + strand, within Echvi_3540at 4197.186 kb on - strand, within Echvi_3540at 4197.196 kb on - strand, within Echvi_3540at 4197.196 kb on - strand, within Echvi_3540at 4197.196 kb on - strand, within Echvi_3540at 4197.196 kb on - strand, within Echvi_3540at 4197.208 kb on + strand, within Echvi_3540at 4197.313 kb on + strand, within Echvi_3540at 4197.314 kb on - strand, within Echvi_3540at 4197.314 kb on - strand, within Echvi_3540at 4197.314 kb on - strand, within Echvi_3540at 4197.317 kb on - strand, within Echvi_3540at 4197.340 kb on - strand, within Echvi_3540at 4197.358 kb on - strand, within Echvi_3540at 4197.382 kb on - strand, within Echvi_3540at 4197.468 kb on + strand, within Echvi_3540at 4197.468 kb on + strand, within Echvi_3540at 4197.487 kb on + strandat 4197.488 kb on - strandat 4197.544 kb on - strandat 4197.544 kb on - strandat 4197.544 kb on - strandat 4197.544 kb on - strandat 4197.559 kb on + strandat 4197.559 kb on + strandat 4197.559 kb on + strandat 4197.560 kb on - strandat 4197.564 kb on + strandat 4197.591 kb on + strandat 4197.592 kb on - strandat 4197.629 kb on + strandat 4197.631 kb on + strandat 4197.631 kb on + strandat 4197.631 kb on + strandat 4197.631 kb on + strandat 4197.631 kb on + strandat 4197.632 kb on - strandat 4197.632 kb on - strandat 4197.632 kb on - strandat 4197.632 kb on - strandat 4197.632 kb on - strandat 4197.654 kb on + strandat 4197.654 kb on + strandat 4197.655 kb on - strandat 4197.655 kb on - strandat 4197.667 kb on + strandat 4197.668 kb on - strandat 4197.668 kb on - strandat 4197.670 kb on - strandat 4197.699 kb on + strandat 4197.751 kb on - strandat 4197.751 kb on - strandat 4197.755 kb on - strandat 4197.755 kb on - strandat 4197.756 kb on + strandat 4197.756 kb on + strandat 4197.757 kb on - strandat 4197.757 kb on - strandat 4197.774 kb on + strandat 4197.774 kb on + strandat 4197.775 kb on - strandat 4197.809 kb on + strandat 4197.823 kb on - strandat 4197.824 kb on + strandat 4197.824 kb on + strandat 4197.824 kb on + strandat 4197.824 kb on + strandat 4197.826 kb on + strandat 4197.826 kb on + strandat 4197.827 kb on - strandat 4197.827 kb on - strandat 4197.856 kb on + strandat 4197.856 kb on + strandat 4197.856 kb on + strandat 4197.858 kb on + strandat 4197.859 kb on - strandat 4197.888 kb on + strandat 4197.898 kb on + strandat 4197.901 kb on + strandat 4197.934 kb on + strandat 4197.934 kb on + strandat 4197.935 kb on - strandat 4197.935 kb on - strandat 4197.935 kb on - strandat 4198.059 kb on + strand, within Echvi_3541at 4198.059 kb on + strand, within Echvi_3541at 4198.060 kb on - strand, within Echvi_3541at 4198.075 kb on - strand, within Echvi_3541at 4198.226 kb on - strand, within Echvi_3541at 4198.263 kb on + strand, within Echvi_3541at 4198.263 kb on + strand, within Echvi_3541at 4198.324 kb on + strand, within Echvi_3541at 4198.415 kb on + strand, within Echvi_3541at 4198.419 kb on + strand, within Echvi_3541at 4198.419 kb on + strand, within Echvi_3541at 4198.420 kb on - strand, within Echvi_3541at 4198.485 kb on + strand, within Echvi_3541at 4198.485 kb on + strand, within Echvi_3541at 4198.485 kb on + strand, within Echvi_3541at 4198.485 kb on + strand, within Echvi_3541at 4198.486 kb on - strand, within Echvi_3541at 4198.486 kb on - strand, within Echvi_3541at 4198.568 kb on + strand, within Echvi_3541at 4198.569 kb on - strand, within Echvi_3541at 4198.572 kb on + strand, within Echvi_3541at 4198.573 kb on - strand, within Echvi_3541at 4198.586 kb on + strand, within Echvi_3541at 4198.587 kb on - strand, within Echvi_3541at 4198.601 kb on + strand, within Echvi_3541at 4198.616 kb on + strand, within Echvi_3541at 4198.658 kb on + strand, within Echvi_3541at 4198.658 kb on + strand, within Echvi_3541at 4198.659 kb on - strand, within Echvi_3541at 4198.659 kb on - strand, within Echvi_3541at 4198.659 kb on - strand, within Echvi_3541at 4198.660 kb on + strand, within Echvi_3541at 4198.660 kb on + strand, within Echvi_3541at 4198.660 kb on + strand, within Echvi_3541at 4198.660 kb on + strand, within Echvi_3541at 4198.661 kb on - strand, within Echvi_3541at 4198.661 kb on - strand, within Echvi_3541at 4198.661 kb on - strand, within Echvi_3541at 4198.661 kb on - strand, within Echvi_3541at 4198.661 kb on - strand, within Echvi_3541at 4198.663 kb on + strand, within Echvi_3541at 4198.663 kb on + strand, within Echvi_3541at 4198.663 kb on + strand, within Echvi_3541at 4198.664 kb on - strand, within Echvi_3541at 4198.664 kb on - strand, within Echvi_3541at 4198.664 kb on - strand, within Echvi_3541at 4198.667 kb on + strand, within Echvi_3541at 4198.668 kb on - strand, within Echvi_3541at 4198.668 kb on - strand, within Echvi_3541at 4198.707 kb on - strand, within Echvi_3541at 4198.730 kb on + strand, within Echvi_3541at 4198.761 kb on + strand, within Echvi_3541at 4198.761 kb on + strand, within Echvi_3541at 4198.762 kb on - strand, within Echvi_3541at 4198.762 kb on - strand, within Echvi_3541at 4198.762 kb on - strand, within Echvi_3541at 4198.784 kb on + strand, within Echvi_3541at 4198.812 kb on + strand, within Echvi_3541at 4198.813 kb on - strand, within Echvi_3541at 4198.874 kb on + strand, within Echvi_3541at 4198.875 kb on - strand, within Echvi_3541at 4198.905 kb on - strand, within Echvi_3541at 4198.905 kb on - strand, within Echvi_3541at 4198.909 kb on - strand, within Echvi_3541at 4198.909 kb on - strand, within Echvi_3541at 4198.909 kb on - strand, within Echvi_3541at 4199.006 kb on + strand, within Echvi_3541at 4199.007 kb on - strand, within Echvi_3541at 4199.047 kb on + strand, within Echvi_3541at 4199.048 kb on - strand, within Echvi_3541at 4199.064 kb on - strand, within Echvi_3541at 4199.125 kb on - strand, within Echvi_3541at 4199.125 kb on - strand, within Echvi_3541at 4199.180 kb on + strand, within Echvi_3541at 4199.394 kb on + strandat 4199.462 kb on + strandat 4199.552 kb on + strandat 4199.552 kb on + strandat 4199.552 kb on + strandat 4199.553 kb on - strandat 4199.557 kb on + strandat 4199.558 kb on - strandat 4199.586 kb on + strandat 4199.598 kb on + strandat 4199.598 kb on + strandat 4199.599 kb on - strandat 4199.599 kb on - strandat 4199.620 kb on - strandat 4199.620 kb on - strandat 4199.628 kb on - strandat 4199.630 kb on + strandat 4199.630 kb on + strandat 4199.631 kb on - strandat 4199.631 kb on - strandat 4199.639 kb on - strandat 4199.639 kb on - strandat 4199.639 kb on - strandat 4199.641 kb on + strandat 4199.642 kb on - strandat 4199.642 kb on - strandat 4199.664 kb on + strandat 4199.665 kb on - strandat 4199.665 kb on - strandat 4199.682 kb on + strandat 4199.787 kb on - strandat 4199.787 kb on - strandat 4199.787 kb on - strandat 4199.821 kb on + strandat 4199.828 kb on - strandat 4199.828 kb on - strandat 4199.828 kb on - strandat 4199.838 kb on - strandat 4199.998 kb on + strand, within Echvi_3542at 4200.016 kb on - strand, within Echvi_3542at 4200.050 kb on + strand, within Echvi_3542at 4200.051 kb on - strand, within Echvi_3542at 4200.057 kb on + strand, within Echvi_3542at 4200.058 kb on - strand, within Echvi_3542at 4200.058 kb on - strand, within Echvi_3542at 4200.058 kb on - strand, within Echvi_3542at 4200.169 kb on + strand, within Echvi_3542at 4200.169 kb on + strand, within Echvi_3542at 4200.170 kb on - strand, within Echvi_3542at 4200.264 kb on - strand, within Echvi_3542at 4200.264 kb on - strand, within Echvi_3542at 4200.321 kb on + strand, within Echvi_3542at 4200.321 kb on + strand, within Echvi_3542at 4200.322 kb on - strand, within Echvi_3542

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.01 mg/ml
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4,196,833 + Echvi_3540 0.68 +0.9
4,196,833 + Echvi_3540 0.68 -0.3
4,196,836 - Echvi_3540 0.69 -0.5
4,196,847 - Echvi_3540 0.69 -0.9
4,196,852 - Echvi_3540 0.69 -0.3
4,196,853 + Echvi_3540 0.69 -0.5
4,196,853 + Echvi_3540 0.69 -0.8
4,196,853 + Echvi_3540 0.69 +0.5
4,196,853 + Echvi_3540 0.69 -0.7
4,196,853 + Echvi_3540 0.69 -0.7
4,196,854 - Echvi_3540 0.69 +0.6
4,196,891 + Echvi_3540 0.70 -0.4
4,196,891 + Echvi_3540 0.70 +0.1
4,196,892 - Echvi_3540 0.70 +0.9
4,196,892 - Echvi_3540 0.70 +0.6
4,196,892 - Echvi_3540 0.70 -1.2
4,196,892 - Echvi_3540 0.70 -0.0
4,196,893 + Echvi_3540 0.70 -0.8
4,196,969 + Echvi_3540 0.73 -1.5
4,196,970 - Echvi_3540 0.73 +1.0
4,196,970 - Echvi_3540 0.73 -0.8
4,196,998 - Echvi_3540 0.74 +0.7
4,197,018 - Echvi_3540 0.75 -0.6
4,197,052 - Echvi_3540 0.76 -1.4
4,197,058 - Echvi_3540 0.76 -1.1
4,197,060 + Echvi_3540 0.76 -1.1
4,197,060 + Echvi_3540 0.76 +0.3
4,197,060 + Echvi_3540 0.76 -0.1
4,197,060 + Echvi_3540 0.76 +0.2
4,197,061 - Echvi_3540 0.76 +1.7
4,197,061 - Echvi_3540 0.76 -2.2
4,197,061 - Echvi_3540 0.76 -1.3
4,197,061 - Echvi_3540 0.76 -0.3
4,197,069 + Echvi_3540 0.76 -1.5
4,197,070 - Echvi_3540 0.76 +0.3
4,197,070 - Echvi_3540 0.76 +0.1
4,197,076 - Echvi_3540 0.77 -0.1
4,197,143 - Echvi_3540 0.79 -0.2
4,197,145 - Echvi_3540 0.79 -0.3
4,197,145 - Echvi_3540 0.79 -0.4
4,197,145 - Echvi_3540 0.79 +0.7
4,197,166 + Echvi_3540 0.80 -1.1
4,197,167 - Echvi_3540 0.80 +0.6
4,197,167 - Echvi_3540 0.80 +0.5
4,197,185 + Echvi_3540 0.80 -2.5
4,197,186 - Echvi_3540 0.80 -0.4
4,197,196 - Echvi_3540 0.81 +0.1
4,197,196 - Echvi_3540 0.81 +0.9
4,197,196 - Echvi_3540 0.81 -1.9
4,197,196 - Echvi_3540 0.81 +1.2
4,197,208 + Echvi_3540 0.81 -0.4
4,197,313 + Echvi_3540 0.84 -0.7
4,197,314 - Echvi_3540 0.84 +1.2
4,197,314 - Echvi_3540 0.84 +0.6
4,197,314 - Echvi_3540 0.84 -2.6
4,197,317 - Echvi_3540 0.85 -0.5
4,197,340 - Echvi_3540 0.85 +0.3
4,197,358 - Echvi_3540 0.86 +0.6
4,197,382 - Echvi_3540 0.87 +1.0
4,197,468 + Echvi_3540 0.90 -3.0
4,197,468 + Echvi_3540 0.90 -0.3
4,197,487 + +0.2
4,197,488 - -0.0
4,197,544 - -0.1
4,197,544 - +0.3
4,197,544 - -0.3
4,197,544 - -0.0
4,197,559 + -2.0
4,197,559 + +1.4
4,197,559 + -2.1
4,197,560 - -0.7
4,197,564 + +0.3
4,197,591 + -0.9
4,197,592 - -0.6
4,197,629 + -1.2
4,197,631 + -1.2
4,197,631 + -2.0
4,197,631 + -0.0
4,197,631 + +0.1
4,197,631 + +0.6
4,197,632 - -0.3
4,197,632 - -0.8
4,197,632 - -0.9
4,197,632 - -0.9
4,197,632 - +1.0
4,197,654 + -0.9
4,197,654 + -2.5
4,197,655 - -0.2
4,197,655 - +2.2
4,197,667 + -1.2
4,197,668 - -0.4
4,197,668 - -0.8
4,197,670 - +0.7
4,197,699 + -1.8
4,197,751 - +0.9
4,197,751 - -2.9
4,197,755 - +1.4
4,197,755 - +0.2
4,197,756 + -1.3
4,197,756 + +0.3
4,197,757 - -1.2
4,197,757 - -2.6
4,197,774 + -0.7
4,197,774 + +0.4
4,197,775 - +1.6
4,197,809 + -1.3
4,197,823 - +0.0
4,197,824 + -2.5
4,197,824 + -0.5
4,197,824 + +0.5
4,197,824 + +1.1
4,197,826 + +2.9
4,197,826 + +0.9
4,197,827 - -1.9
4,197,827 - -0.1
4,197,856 + -0.5
4,197,856 + +0.3
4,197,856 + +0.0
4,197,858 + -1.4
4,197,859 - +0.4
4,197,888 + -0.3
4,197,898 + -1.9
4,197,901 + -1.5
4,197,934 + +1.4
4,197,934 + +1.2
4,197,935 - +0.7
4,197,935 - -0.9
4,197,935 - +0.8
4,198,059 + Echvi_3541 0.16 -1.0
4,198,059 + Echvi_3541 0.16 -0.0
4,198,060 - Echvi_3541 0.17 +0.1
4,198,075 - Echvi_3541 0.17 +1.1
4,198,226 - Echvi_3541 0.27 +0.2
4,198,263 + Echvi_3541 0.29 +0.3
4,198,263 + Echvi_3541 0.29 -0.5
4,198,324 + Echvi_3541 0.33 -0.4
4,198,415 + Echvi_3541 0.39 -0.2
4,198,419 + Echvi_3541 0.39 -0.2
4,198,419 + Echvi_3541 0.39 +0.6
4,198,420 - Echvi_3541 0.39 -0.9
4,198,485 + Echvi_3541 0.43 -1.0
4,198,485 + Echvi_3541 0.43 +0.6
4,198,485 + Echvi_3541 0.43 +0.1
4,198,485 + Echvi_3541 0.43 +0.8
4,198,486 - Echvi_3541 0.43 +4.2
4,198,486 - Echvi_3541 0.43 -0.8
4,198,568 + Echvi_3541 0.48 +1.0
4,198,569 - Echvi_3541 0.48 +0.5
4,198,572 + Echvi_3541 0.49 +0.3
4,198,573 - Echvi_3541 0.49 +1.7
4,198,586 + Echvi_3541 0.49 +0.1
4,198,587 - Echvi_3541 0.49 +1.4
4,198,601 + Echvi_3541 0.50 +2.9
4,198,616 + Echvi_3541 0.51 -0.3
4,198,658 + Echvi_3541 0.54 -1.1
4,198,658 + Echvi_3541 0.54 +0.3
4,198,659 - Echvi_3541 0.54 +0.4
4,198,659 - Echvi_3541 0.54 +2.0
4,198,659 - Echvi_3541 0.54 +0.9
4,198,660 + Echvi_3541 0.54 +0.4
4,198,660 + Echvi_3541 0.54 -0.2
4,198,660 + Echvi_3541 0.54 +0.2
4,198,660 + Echvi_3541 0.54 -1.3
4,198,661 - Echvi_3541 0.54 +0.3
4,198,661 - Echvi_3541 0.54 -0.1
4,198,661 - Echvi_3541 0.54 -0.1
4,198,661 - Echvi_3541 0.54 -0.8
4,198,661 - Echvi_3541 0.54 -2.0
4,198,663 + Echvi_3541 0.54 +0.4
4,198,663 + Echvi_3541 0.54 -1.9
4,198,663 + Echvi_3541 0.54 +1.2
4,198,664 - Echvi_3541 0.54 -1.7
4,198,664 - Echvi_3541 0.54 +1.3
4,198,664 - Echvi_3541 0.54 -0.8
4,198,667 + Echvi_3541 0.54 -0.7
4,198,668 - Echvi_3541 0.54 -1.2
4,198,668 - Echvi_3541 0.54 -0.0
4,198,707 - Echvi_3541 0.57 -1.1
4,198,730 + Echvi_3541 0.58 +0.2
4,198,761 + Echvi_3541 0.60 -0.1
4,198,761 + Echvi_3541 0.60 -1.4
4,198,762 - Echvi_3541 0.60 -0.7
4,198,762 - Echvi_3541 0.60 +1.1
4,198,762 - Echvi_3541 0.60 +0.1
4,198,784 + Echvi_3541 0.62 -1.0
4,198,812 + Echvi_3541 0.63 -0.2
4,198,813 - Echvi_3541 0.64 -0.0
4,198,874 + Echvi_3541 0.67 -1.8
4,198,875 - Echvi_3541 0.67 +0.5
4,198,905 - Echvi_3541 0.69 +2.0
4,198,905 - Echvi_3541 0.69 +0.1
4,198,909 - Echvi_3541 0.70 -0.5
4,198,909 - Echvi_3541 0.70 -1.3
4,198,909 - Echvi_3541 0.70 -0.7
4,199,006 + Echvi_3541 0.76 -1.3
4,199,007 - Echvi_3541 0.76 -0.3
4,199,047 + Echvi_3541 0.78 -0.3
4,199,048 - Echvi_3541 0.78 +0.8
4,199,064 - Echvi_3541 0.79 +0.7
4,199,125 - Echvi_3541 0.83 +0.3
4,199,125 - Echvi_3541 0.83 +0.1
4,199,180 + Echvi_3541 0.86 -0.6
4,199,394 + +0.0
4,199,462 + -3.4
4,199,552 + +0.4
4,199,552 + -3.5
4,199,552 + -0.2
4,199,553 - +0.4
4,199,557 + -0.8
4,199,558 - +0.8
4,199,586 + -1.4
4,199,598 + +0.3
4,199,598 + +0.1
4,199,599 - -0.6
4,199,599 - -0.4
4,199,620 - +0.6
4,199,620 - +0.6
4,199,628 - -0.7
4,199,630 + +0.2
4,199,630 + -0.5
4,199,631 - +1.5
4,199,631 - -1.3
4,199,639 - -1.3
4,199,639 - +1.9
4,199,639 - -2.7
4,199,641 + -0.2
4,199,642 - +0.3
4,199,642 - +0.9
4,199,664 + +1.5
4,199,665 - +0.4
4,199,665 - -0.7
4,199,682 + +0.6
4,199,787 - +0.4
4,199,787 - -0.4
4,199,787 - +0.4
4,199,821 + +0.0
4,199,828 - -0.5
4,199,828 - +0.1
4,199,828 - -2.2
4,199,838 - -0.4
4,199,998 + Echvi_3542 0.15 +0.3
4,200,016 - Echvi_3542 0.15 -1.4
4,200,050 + Echvi_3542 0.17 -2.5
4,200,051 - Echvi_3542 0.17 +0.5
4,200,057 + Echvi_3542 0.17 +0.4
4,200,058 - Echvi_3542 0.17 -0.6
4,200,058 - Echvi_3542 0.17 -0.9
4,200,058 - Echvi_3542 0.17 +1.3
4,200,169 + Echvi_3542 0.22 +0.8
4,200,169 + Echvi_3542 0.22 -1.9
4,200,170 - Echvi_3542 0.22 -0.3
4,200,264 - Echvi_3542 0.26 -1.1
4,200,264 - Echvi_3542 0.26 +0.0
4,200,321 + Echvi_3542 0.29 +0.7
4,200,321 + Echvi_3542 0.29 -1.3
4,200,322 - Echvi_3542 0.29 +0.6

Or see this region's nucleotide sequence