Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3265

Experiment: m.b. Thallium(I) acetate 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3263 and Echvi_3264 are separated by 336 nucleotidesEchvi_3264 and Echvi_3265 are separated by 2 nucleotidesEchvi_3265 and Echvi_3266 are separated by 12 nucleotides Echvi_3263: Echvi_3263 - Receptor L domain., at 3,867,359 to 3,868,093 _3263 Echvi_3264: Echvi_3264 - hypothetical protein, at 3,868,430 to 3,868,840 _3264 Echvi_3265: Echvi_3265 - DNA replication protein, at 3,868,843 to 3,869,562 _3265 Echvi_3266: Echvi_3266 - Transposase and inactivated derivatives, at 3,869,575 to 3,871,155 _3266 Position (kb) 3868 3869 3870Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3867.852 kb on - strand, within Echvi_3263at 3867.859 kb on + strand, within Echvi_3263at 3867.859 kb on + strand, within Echvi_3263at 3867.860 kb on - strand, within Echvi_3263at 3867.893 kb on - strand, within Echvi_3263at 3867.902 kb on + strand, within Echvi_3263at 3867.902 kb on + strand, within Echvi_3263at 3867.902 kb on + strand, within Echvi_3263at 3867.902 kb on + strand, within Echvi_3263at 3867.902 kb on + strand, within Echvi_3263at 3867.915 kb on + strand, within Echvi_3263at 3867.919 kb on + strand, within Echvi_3263at 3867.919 kb on + strand, within Echvi_3263at 3867.920 kb on - strand, within Echvi_3263at 3867.920 kb on - strand, within Echvi_3263at 3867.947 kb on - strand, within Echvi_3263at 3867.948 kb on + strand, within Echvi_3263at 3867.996 kb on + strand, within Echvi_3263at 3868.015 kb on + strand, within Echvi_3263at 3868.016 kb on - strand, within Echvi_3263at 3868.016 kb on - strand, within Echvi_3263at 3868.030 kb on + strandat 3868.030 kb on + strandat 3868.031 kb on - strandat 3868.033 kb on + strandat 3868.034 kb on - strandat 3868.034 kb on - strandat 3868.034 kb on - strandat 3868.045 kb on + strandat 3868.052 kb on + strandat 3868.076 kb on + strandat 3868.077 kb on - strandat 3868.095 kb on + strandat 3868.096 kb on - strandat 3868.096 kb on - strandat 3868.116 kb on + strandat 3868.117 kb on - strandat 3868.117 kb on - strandat 3868.167 kb on + strandat 3868.177 kb on - strandat 3868.195 kb on - strandat 3868.198 kb on + strandat 3868.199 kb on - strandat 3868.199 kb on - strandat 3868.322 kb on + strandat 3868.326 kb on + strandat 3868.327 kb on - strandat 3868.399 kb on - strandat 3868.403 kb on + strandat 3868.403 kb on + strandat 3868.403 kb on + strandat 3868.425 kb on - strandat 3868.494 kb on + strand, within Echvi_3264at 3868.495 kb on - strand, within Echvi_3264at 3868.587 kb on + strand, within Echvi_3264at 3868.587 kb on + strand, within Echvi_3264at 3868.613 kb on + strand, within Echvi_3264at 3868.615 kb on + strand, within Echvi_3264at 3868.616 kb on - strand, within Echvi_3264at 3868.616 kb on - strand, within Echvi_3264at 3868.616 kb on - strand, within Echvi_3264at 3868.619 kb on + strand, within Echvi_3264at 3868.619 kb on + strand, within Echvi_3264at 3868.630 kb on + strand, within Echvi_3264at 3868.655 kb on + strand, within Echvi_3264at 3868.655 kb on + strandat 3868.667 kb on + strand, within Echvi_3264at 3868.696 kb on + strand, within Echvi_3264at 3868.698 kb on + strand, within Echvi_3264at 3868.699 kb on - strand, within Echvi_3264at 3868.769 kb on + strand, within Echvi_3264at 3868.770 kb on - strand, within Echvi_3264at 3868.802 kb on - strandat 3868.833 kb on + strandat 3868.834 kb on - strandat 3868.834 kb on - strandat 3868.863 kb on + strandat 3868.864 kb on - strandat 3868.872 kb on + strandat 3868.872 kb on + strandat 3868.873 kb on - strandat 3868.887 kb on - strandat 3868.897 kb on + strandat 3869.166 kb on + strand, within Echvi_3265at 3869.169 kb on + strand, within Echvi_3265at 3869.285 kb on + strand, within Echvi_3265at 3869.285 kb on + strand, within Echvi_3265at 3869.285 kb on + strand, within Echvi_3265at 3869.316 kb on + strand, within Echvi_3265at 3869.338 kb on - strand, within Echvi_3265at 3869.338 kb on - strand, within Echvi_3265at 3869.369 kb on + strand, within Echvi_3265at 3869.369 kb on + strand, within Echvi_3265at 3869.370 kb on - strand, within Echvi_3265at 3869.370 kb on - strand, within Echvi_3265at 3869.370 kb on - strand, within Echvi_3265at 3869.562 kb on + strandat 3869.563 kb on - strandat 3869.569 kb on + strandat 3869.569 kb on + strandat 3869.570 kb on - strandat 3869.570 kb on - strandat 3869.570 kb on - strandat 3869.600 kb on + strandat 3869.600 kb on + strandat 3869.649 kb on + strandat 3869.652 kb on + strandat 3869.697 kb on + strandat 3869.706 kb on - strandat 3869.711 kb on + strandat 3869.711 kb on + strandat 3869.804 kb on + strand, within Echvi_3266at 3869.894 kb on + strand, within Echvi_3266at 3869.895 kb on - strand, within Echvi_3266at 3869.895 kb on - strand, within Echvi_3266at 3869.916 kb on - strand, within Echvi_3266at 3869.952 kb on + strand, within Echvi_3266at 3870.008 kb on + strand, within Echvi_3266at 3870.008 kb on + strand, within Echvi_3266at 3870.014 kb on + strand, within Echvi_3266at 3870.014 kb on + strand, within Echvi_3266at 3870.014 kb on + strand, within Echvi_3266at 3870.015 kb on - strand, within Echvi_3266at 3870.015 kb on - strand, within Echvi_3266at 3870.057 kb on + strand, within Echvi_3266at 3870.077 kb on + strand, within Echvi_3266at 3870.077 kb on + strand, within Echvi_3266at 3870.078 kb on - strand, within Echvi_3266at 3870.078 kb on - strand, within Echvi_3266at 3870.078 kb on - strand, within Echvi_3266at 3870.078 kb on - strand, within Echvi_3266at 3870.081 kb on - strand, within Echvi_3266at 3870.101 kb on + strand, within Echvi_3266at 3870.268 kb on - strand, within Echvi_3266at 3870.326 kb on - strand, within Echvi_3266at 3870.335 kb on + strand, within Echvi_3266at 3870.458 kb on + strand, within Echvi_3266at 3870.458 kb on + strand, within Echvi_3266at 3870.458 kb on + strand, within Echvi_3266at 3870.458 kb on + strand, within Echvi_3266at 3870.459 kb on - strand, within Echvi_3266at 3870.459 kb on - strand, within Echvi_3266

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.01 mg/ml
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3,867,852 - Echvi_3263 0.67 -0.8
3,867,859 + Echvi_3263 0.68 +0.2
3,867,859 + Echvi_3263 0.68 -1.4
3,867,860 - Echvi_3263 0.68 +0.8
3,867,893 - Echvi_3263 0.73 +1.1
3,867,902 + Echvi_3263 0.74 -0.8
3,867,902 + Echvi_3263 0.74 +0.0
3,867,902 + Echvi_3263 0.74 -0.1
3,867,902 + Echvi_3263 0.74 -0.2
3,867,902 + Echvi_3263 0.74 -1.6
3,867,915 + Echvi_3263 0.76 +0.5
3,867,919 + Echvi_3263 0.76 +0.4
3,867,919 + Echvi_3263 0.76 -1.4
3,867,920 - Echvi_3263 0.76 +0.4
3,867,920 - Echvi_3263 0.76 -0.4
3,867,947 - Echvi_3263 0.80 -0.1
3,867,948 + Echvi_3263 0.80 +1.2
3,867,996 + Echvi_3263 0.87 -0.9
3,868,015 + Echvi_3263 0.89 -0.6
3,868,016 - Echvi_3263 0.89 +1.0
3,868,016 - Echvi_3263 0.89 -2.6
3,868,030 + +0.8
3,868,030 + -1.6
3,868,031 - +1.4
3,868,033 + +0.6
3,868,034 - +1.1
3,868,034 - -1.3
3,868,034 - +1.9
3,868,045 + -0.9
3,868,052 + +1.0
3,868,076 + -0.7
3,868,077 - +1.8
3,868,095 + -0.8
3,868,096 - +2.1
3,868,096 - -0.3
3,868,116 + -0.0
3,868,117 - -2.5
3,868,117 - -0.7
3,868,167 + -0.2
3,868,177 - -1.2
3,868,195 - +0.1
3,868,198 + +0.7
3,868,199 - +0.7
3,868,199 - -0.7
3,868,322 + +0.3
3,868,326 + +0.6
3,868,327 - -0.1
3,868,399 - -1.1
3,868,403 + +0.7
3,868,403 + +0.3
3,868,403 + -0.4
3,868,425 - +1.0
3,868,494 + Echvi_3264 0.16 -1.5
3,868,495 - Echvi_3264 0.16 -1.1
3,868,587 + Echvi_3264 0.38 -1.0
3,868,587 + Echvi_3264 0.38 -2.8
3,868,613 + Echvi_3264 0.45 +0.2
3,868,615 + Echvi_3264 0.45 -1.0
3,868,616 - Echvi_3264 0.45 -0.8
3,868,616 - Echvi_3264 0.45 +0.6
3,868,616 - Echvi_3264 0.45 +0.1
3,868,619 + Echvi_3264 0.46 -2.2
3,868,619 + Echvi_3264 0.46 +0.0
3,868,630 + Echvi_3264 0.49 -1.3
3,868,655 + Echvi_3264 0.55 -2.0
3,868,655 + +0.0
3,868,667 + Echvi_3264 0.58 +0.8
3,868,696 + Echvi_3264 0.65 +1.1
3,868,698 + Echvi_3264 0.65 +0.1
3,868,699 - Echvi_3264 0.65 -0.7
3,868,769 + Echvi_3264 0.82 +1.4
3,868,770 - Echvi_3264 0.83 +0.8
3,868,802 - -1.5
3,868,833 + -1.2
3,868,834 - -0.0
3,868,834 - -1.6
3,868,863 + -0.1
3,868,864 - +0.4
3,868,872 + +0.6
3,868,872 + -0.6
3,868,873 - -0.6
3,868,887 - -0.5
3,868,897 + -0.4
3,869,166 + Echvi_3265 0.45 -1.4
3,869,169 + Echvi_3265 0.45 -0.1
3,869,285 + Echvi_3265 0.61 -1.5
3,869,285 + Echvi_3265 0.61 +0.3
3,869,285 + Echvi_3265 0.61 +0.2
3,869,316 + Echvi_3265 0.66 +0.2
3,869,338 - Echvi_3265 0.69 +0.0
3,869,338 - Echvi_3265 0.69 -0.8
3,869,369 + Echvi_3265 0.73 -0.2
3,869,369 + Echvi_3265 0.73 -2.1
3,869,370 - Echvi_3265 0.73 -1.0
3,869,370 - Echvi_3265 0.73 -2.2
3,869,370 - Echvi_3265 0.73 -0.7
3,869,562 + -0.9
3,869,563 - -0.5
3,869,569 + -0.1
3,869,569 + -2.0
3,869,570 - +0.4
3,869,570 - +1.3
3,869,570 - -0.6
3,869,600 + +1.3
3,869,600 + -1.1
3,869,649 + +0.1
3,869,652 + +1.7
3,869,697 + -1.8
3,869,706 - +0.4
3,869,711 + -2.7
3,869,711 + -0.5
3,869,804 + Echvi_3266 0.14 +0.2
3,869,894 + Echvi_3266 0.20 +0.3
3,869,895 - Echvi_3266 0.20 -1.1
3,869,895 - Echvi_3266 0.20 +0.8
3,869,916 - Echvi_3266 0.22 +0.4
3,869,952 + Echvi_3266 0.24 +0.4
3,870,008 + Echvi_3266 0.27 -0.9
3,870,008 + Echvi_3266 0.27 +0.0
3,870,014 + Echvi_3266 0.28 -1.3
3,870,014 + Echvi_3266 0.28 +1.7
3,870,014 + Echvi_3266 0.28 -2.6
3,870,015 - Echvi_3266 0.28 -0.2
3,870,015 - Echvi_3266 0.28 -1.0
3,870,057 + Echvi_3266 0.30 +0.3
3,870,077 + Echvi_3266 0.32 -1.5
3,870,077 + Echvi_3266 0.32 +1.8
3,870,078 - Echvi_3266 0.32 -0.4
3,870,078 - Echvi_3266 0.32 +1.7
3,870,078 - Echvi_3266 0.32 +0.3
3,870,078 - Echvi_3266 0.32 +2.0
3,870,081 - Echvi_3266 0.32 -0.3
3,870,101 + Echvi_3266 0.33 -1.7
3,870,268 - Echvi_3266 0.44 -0.6
3,870,326 - Echvi_3266 0.48 -0.6
3,870,335 + Echvi_3266 0.48 +0.2
3,870,458 + Echvi_3266 0.56 +0.2
3,870,458 + Echvi_3266 0.56 +1.3
3,870,458 + Echvi_3266 0.56 +0.5
3,870,458 + Echvi_3266 0.56 +0.7
3,870,459 - Echvi_3266 0.56 -0.4
3,870,459 - Echvi_3266 0.56 +1.0

Or see this region's nucleotide sequence