Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2694

Experiment: m.b. Thallium(I) acetate 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2693 and Echvi_2694 are separated by 278 nucleotidesEchvi_2694 and Echvi_2695 are separated by 62 nucleotides Echvi_2693: Echvi_2693 - catalase/peroxidase HPI, at 3,199,363 to 3,201,624 _2693 Echvi_2694: Echvi_2694 - Beta-xylosidase, at 3,201,903 to 3,203,537 _2694 Echvi_2695: Echvi_2695 - Beta-galactosidase/beta-glucuronidase, at 3,203,600 to 3,206,551 _2695 Position (kb) 3201 3202 3203 3204Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3200.922 kb on + strand, within Echvi_2693at 3200.957 kb on - strand, within Echvi_2693at 3201.095 kb on + strand, within Echvi_2693at 3201.181 kb on + strand, within Echvi_2693at 3201.181 kb on + strand, within Echvi_2693at 3201.181 kb on + strand, within Echvi_2693at 3201.197 kb on - strand, within Echvi_2693at 3201.198 kb on + strand, within Echvi_2693at 3201.198 kb on + strand, within Echvi_2693at 3201.198 kb on + strand, within Echvi_2693at 3201.198 kb on + strand, within Echvi_2693at 3201.198 kb on + strand, within Echvi_2693at 3201.199 kb on - strand, within Echvi_2693at 3201.199 kb on - strand, within Echvi_2693at 3201.199 kb on - strand, within Echvi_2693at 3201.199 kb on - strand, within Echvi_2693at 3201.239 kb on + strand, within Echvi_2693at 3201.368 kb on + strand, within Echvi_2693at 3201.368 kb on + strand, within Echvi_2693at 3201.368 kb on + strand, within Echvi_2693at 3201.368 kb on + strand, within Echvi_2693at 3201.369 kb on - strand, within Echvi_2693at 3201.369 kb on - strand, within Echvi_2693at 3201.387 kb on + strandat 3201.461 kb on - strandat 3201.524 kb on + strandat 3201.525 kb on - strandat 3201.525 kb on - strandat 3201.525 kb on - strandat 3201.525 kb on - strandat 3201.525 kb on - strandat 3201.525 kb on - strandat 3201.526 kb on + strandat 3201.526 kb on + strandat 3201.526 kb on + strandat 3201.527 kb on - strandat 3201.527 kb on - strandat 3201.631 kb on - strandat 3201.634 kb on + strandat 3201.635 kb on - strandat 3201.666 kb on - strandat 3201.768 kb on + strandat 3201.775 kb on + strandat 3201.776 kb on - strandat 3201.776 kb on - strandat 3201.789 kb on - strandat 3201.796 kb on - strandat 3201.824 kb on + strandat 3201.882 kb on - strandat 3201.892 kb on + strandat 3201.913 kb on + strandat 3201.943 kb on - strandat 3201.999 kb on + strandat 3202.000 kb on - strandat 3202.000 kb on - strandat 3202.020 kb on + strandat 3202.098 kb on - strand, within Echvi_2694at 3202.099 kb on + strand, within Echvi_2694at 3202.100 kb on - strand, within Echvi_2694at 3202.153 kb on + strand, within Echvi_2694at 3202.153 kb on + strand, within Echvi_2694at 3202.177 kb on + strand, within Echvi_2694at 3202.177 kb on + strand, within Echvi_2694at 3202.178 kb on - strand, within Echvi_2694at 3202.178 kb on - strand, within Echvi_2694at 3202.178 kb on - strand, within Echvi_2694at 3202.178 kb on - strand, within Echvi_2694at 3202.275 kb on + strand, within Echvi_2694at 3202.275 kb on + strand, within Echvi_2694at 3202.276 kb on - strand, within Echvi_2694at 3202.329 kb on - strand, within Echvi_2694at 3202.362 kb on + strand, within Echvi_2694at 3202.362 kb on + strand, within Echvi_2694at 3202.363 kb on - strand, within Echvi_2694at 3202.439 kb on + strand, within Echvi_2694at 3202.440 kb on - strand, within Echvi_2694at 3202.549 kb on + strand, within Echvi_2694at 3202.594 kb on + strand, within Echvi_2694at 3202.595 kb on - strand, within Echvi_2694at 3202.613 kb on + strand, within Echvi_2694at 3202.614 kb on - strand, within Echvi_2694at 3202.614 kb on - strand, within Echvi_2694at 3202.614 kb on - strand, within Echvi_2694at 3202.624 kb on - strand, within Echvi_2694at 3202.624 kb on - strand, within Echvi_2694at 3202.661 kb on - strand, within Echvi_2694at 3202.669 kb on + strand, within Echvi_2694at 3202.709 kb on - strand, within Echvi_2694at 3202.766 kb on - strand, within Echvi_2694at 3202.766 kb on - strand, within Echvi_2694at 3202.768 kb on - strand, within Echvi_2694at 3202.790 kb on - strand, within Echvi_2694at 3202.801 kb on + strand, within Echvi_2694at 3202.801 kb on + strand, within Echvi_2694at 3202.801 kb on + strand, within Echvi_2694at 3202.801 kb on + strand, within Echvi_2694at 3202.811 kb on + strand, within Echvi_2694at 3202.811 kb on + strand, within Echvi_2694at 3202.931 kb on - strand, within Echvi_2694at 3202.932 kb on + strand, within Echvi_2694at 3202.932 kb on + strand, within Echvi_2694at 3202.933 kb on - strand, within Echvi_2694at 3202.940 kb on - strand, within Echvi_2694at 3203.024 kb on + strand, within Echvi_2694at 3203.025 kb on - strand, within Echvi_2694at 3203.025 kb on - strand, within Echvi_2694at 3203.070 kb on + strand, within Echvi_2694at 3203.071 kb on - strand, within Echvi_2694at 3203.071 kb on - strand, within Echvi_2694at 3203.078 kb on + strand, within Echvi_2694at 3203.079 kb on - strand, within Echvi_2694at 3203.109 kb on + strand, within Echvi_2694at 3203.118 kb on + strand, within Echvi_2694at 3203.118 kb on + strand, within Echvi_2694at 3203.119 kb on - strand, within Echvi_2694at 3203.119 kb on - strand, within Echvi_2694at 3203.119 kb on - strand, within Echvi_2694at 3203.120 kb on + strand, within Echvi_2694at 3203.120 kb on + strand, within Echvi_2694at 3203.122 kb on + strand, within Echvi_2694at 3203.122 kb on + strand, within Echvi_2694at 3203.122 kb on + strand, within Echvi_2694at 3203.122 kb on + strand, within Echvi_2694at 3203.122 kb on + strand, within Echvi_2694at 3203.122 kb on + strand, within Echvi_2694at 3203.123 kb on - strand, within Echvi_2694at 3203.123 kb on - strand, within Echvi_2694at 3203.123 kb on - strand, within Echvi_2694at 3203.128 kb on - strand, within Echvi_2694at 3203.232 kb on - strand, within Echvi_2694at 3203.232 kb on - strand, within Echvi_2694at 3203.232 kb on - strand, within Echvi_2694at 3203.232 kb on - strand, within Echvi_2694at 3203.232 kb on - strand, within Echvi_2694at 3203.232 kb on - strand, within Echvi_2694at 3203.309 kb on - strand, within Echvi_2694at 3203.435 kb on + strandat 3203.451 kb on + strandat 3203.451 kb on + strandat 3203.492 kb on + strandat 3203.501 kb on + strandat 3203.519 kb on + strandat 3203.590 kb on + strandat 3203.601 kb on + strandat 3203.602 kb on - strandat 3203.611 kb on + strandat 3203.612 kb on - strandat 3203.612 kb on - strandat 3203.692 kb on + strandat 3203.780 kb on + strandat 3203.780 kb on + strandat 3203.781 kb on - strandat 3203.781 kb on - strandat 3203.790 kb on + strandat 3203.856 kb on + strandat 3203.876 kb on - strandat 3204.134 kb on + strand, within Echvi_2695at 3204.188 kb on + strand, within Echvi_2695at 3204.188 kb on + strand, within Echvi_2695at 3204.405 kb on - strand, within Echvi_2695at 3204.405 kb on - strand, within Echvi_2695at 3204.416 kb on + strand, within Echvi_2695at 3204.417 kb on - strand, within Echvi_2695at 3204.417 kb on - strand, within Echvi_2695at 3204.417 kb on - strand, within Echvi_2695at 3204.479 kb on + strand, within Echvi_2695

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.01 mg/ml
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3,200,922 + Echvi_2693 0.69 -1.8
3,200,957 - Echvi_2693 0.70 -1.5
3,201,095 + Echvi_2693 0.77 +2.7
3,201,181 + Echvi_2693 0.80 -1.2
3,201,181 + Echvi_2693 0.80 -1.0
3,201,181 + Echvi_2693 0.80 -0.5
3,201,197 - Echvi_2693 0.81 +0.2
3,201,198 + Echvi_2693 0.81 -1.4
3,201,198 + Echvi_2693 0.81 +0.2
3,201,198 + Echvi_2693 0.81 +0.7
3,201,198 + Echvi_2693 0.81 -2.0
3,201,198 + Echvi_2693 0.81 +0.6
3,201,199 - Echvi_2693 0.81 -0.0
3,201,199 - Echvi_2693 0.81 +0.5
3,201,199 - Echvi_2693 0.81 -1.0
3,201,199 - Echvi_2693 0.81 +0.7
3,201,239 + Echvi_2693 0.83 +1.3
3,201,368 + Echvi_2693 0.89 -0.6
3,201,368 + Echvi_2693 0.89 -0.8
3,201,368 + Echvi_2693 0.89 -2.1
3,201,368 + Echvi_2693 0.89 -0.1
3,201,369 - Echvi_2693 0.89 -0.9
3,201,369 - Echvi_2693 0.89 -0.4
3,201,387 + +1.1
3,201,461 - -0.2
3,201,524 + +0.4
3,201,525 - -1.2
3,201,525 - +1.2
3,201,525 - -1.4
3,201,525 - -1.8
3,201,525 - -0.4
3,201,525 - +0.7
3,201,526 + -2.8
3,201,526 + +1.0
3,201,526 + -0.9
3,201,527 - +0.1
3,201,527 - -3.1
3,201,631 - -0.8
3,201,634 + +1.3
3,201,635 - +0.5
3,201,666 - +0.9
3,201,768 + -0.4
3,201,775 + +0.1
3,201,776 - -0.7
3,201,776 - -1.0
3,201,789 - -1.1
3,201,796 - +2.3
3,201,824 + -0.2
3,201,882 - -0.1
3,201,892 + -0.4
3,201,913 + -0.3
3,201,943 - -0.2
3,201,999 + +3.4
3,202,000 - -0.6
3,202,000 - -1.6
3,202,020 + +0.8
3,202,098 - Echvi_2694 0.12 +1.2
3,202,099 + Echvi_2694 0.12 +1.3
3,202,100 - Echvi_2694 0.12 +2.1
3,202,153 + Echvi_2694 0.15 +0.2
3,202,153 + Echvi_2694 0.15 -0.3
3,202,177 + Echvi_2694 0.17 -0.6
3,202,177 + Echvi_2694 0.17 -0.8
3,202,178 - Echvi_2694 0.17 +1.6
3,202,178 - Echvi_2694 0.17 -1.6
3,202,178 - Echvi_2694 0.17 +1.0
3,202,178 - Echvi_2694 0.17 -0.3
3,202,275 + Echvi_2694 0.23 -0.1
3,202,275 + Echvi_2694 0.23 +0.7
3,202,276 - Echvi_2694 0.23 -0.9
3,202,329 - Echvi_2694 0.26 +0.0
3,202,362 + Echvi_2694 0.28 +0.6
3,202,362 + Echvi_2694 0.28 -1.6
3,202,363 - Echvi_2694 0.28 +0.8
3,202,439 + Echvi_2694 0.33 -0.5
3,202,440 - Echvi_2694 0.33 -0.9
3,202,549 + Echvi_2694 0.40 -0.1
3,202,594 + Echvi_2694 0.42 +1.9
3,202,595 - Echvi_2694 0.42 +0.7
3,202,613 + Echvi_2694 0.43 +0.0
3,202,614 - Echvi_2694 0.43 +0.5
3,202,614 - Echvi_2694 0.43 +0.5
3,202,614 - Echvi_2694 0.43 -1.1
3,202,624 - Echvi_2694 0.44 -0.5
3,202,624 - Echvi_2694 0.44 -0.5
3,202,661 - Echvi_2694 0.46 -0.8
3,202,669 + Echvi_2694 0.47 -2.2
3,202,709 - Echvi_2694 0.49 +1.0
3,202,766 - Echvi_2694 0.53 +0.2
3,202,766 - Echvi_2694 0.53 -0.3
3,202,768 - Echvi_2694 0.53 -0.2
3,202,790 - Echvi_2694 0.54 -0.4
3,202,801 + Echvi_2694 0.55 +0.5
3,202,801 + Echvi_2694 0.55 +0.7
3,202,801 + Echvi_2694 0.55 +0.8
3,202,801 + Echvi_2694 0.55 -0.3
3,202,811 + Echvi_2694 0.56 +2.5
3,202,811 + Echvi_2694 0.56 -2.5
3,202,931 - Echvi_2694 0.63 +0.9
3,202,932 + Echvi_2694 0.63 -0.3
3,202,932 + Echvi_2694 0.63 -1.8
3,202,933 - Echvi_2694 0.63 -3.2
3,202,940 - Echvi_2694 0.63 +2.4
3,203,024 + Echvi_2694 0.69 +1.1
3,203,025 - Echvi_2694 0.69 +1.1
3,203,025 - Echvi_2694 0.69 -0.2
3,203,070 + Echvi_2694 0.71 +0.7
3,203,071 - Echvi_2694 0.71 -2.6
3,203,071 - Echvi_2694 0.71 +0.1
3,203,078 + Echvi_2694 0.72 +0.5
3,203,079 - Echvi_2694 0.72 +1.9
3,203,109 + Echvi_2694 0.74 +0.2
3,203,118 + Echvi_2694 0.74 -1.0
3,203,118 + Echvi_2694 0.74 -0.1
3,203,119 - Echvi_2694 0.74 +0.1
3,203,119 - Echvi_2694 0.74 +0.3
3,203,119 - Echvi_2694 0.74 -0.7
3,203,120 + Echvi_2694 0.74 -1.6
3,203,120 + Echvi_2694 0.74 -0.4
3,203,122 + Echvi_2694 0.75 +0.3
3,203,122 + Echvi_2694 0.75 +0.3
3,203,122 + Echvi_2694 0.75 -0.6
3,203,122 + Echvi_2694 0.75 -0.2
3,203,122 + Echvi_2694 0.75 +0.7
3,203,122 + Echvi_2694 0.75 +0.3
3,203,123 - Echvi_2694 0.75 +0.6
3,203,123 - Echvi_2694 0.75 +0.7
3,203,123 - Echvi_2694 0.75 -2.1
3,203,128 - Echvi_2694 0.75 +2.7
3,203,232 - Echvi_2694 0.81 +0.0
3,203,232 - Echvi_2694 0.81 -0.3
3,203,232 - Echvi_2694 0.81 -0.4
3,203,232 - Echvi_2694 0.81 -0.7
3,203,232 - Echvi_2694 0.81 -0.8
3,203,232 - Echvi_2694 0.81 -1.0
3,203,309 - Echvi_2694 0.86 +1.0
3,203,435 + +0.8
3,203,451 + -0.2
3,203,451 + -0.7
3,203,492 + +0.0
3,203,501 + -0.2
3,203,519 + -2.1
3,203,590 + +0.7
3,203,601 + -0.2
3,203,602 - -0.9
3,203,611 + -2.1
3,203,612 - +1.3
3,203,612 - +0.4
3,203,692 + +0.3
3,203,780 + +0.3
3,203,780 + +0.3
3,203,781 - -0.2
3,203,781 - +1.4
3,203,790 + +0.6
3,203,856 + -0.3
3,203,876 - +0.9
3,204,134 + Echvi_2695 0.18 +0.7
3,204,188 + Echvi_2695 0.20 +1.1
3,204,188 + Echvi_2695 0.20 -0.1
3,204,405 - Echvi_2695 0.27 +2.9
3,204,405 - Echvi_2695 0.27 +0.8
3,204,416 + Echvi_2695 0.28 +0.4
3,204,417 - Echvi_2695 0.28 +0.7
3,204,417 - Echvi_2695 0.28 +0.2
3,204,417 - Echvi_2695 0.28 -0.8
3,204,479 + Echvi_2695 0.30 -1.2

Or see this region's nucleotide sequence