Experiment: m.b. Thallium(I) acetate 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1940 and Echvi_1941 overlap by 11 nucleotides Echvi_1941 and Echvi_1942 overlap by 4 nucleotides Echvi_1942 and Echvi_1943 are separated by 3 nucleotides
Echvi_1940: Echvi_1940 - Bacteroides conjugative transposon TraM protein, at 2,283,856 to 2,285,109
_1940
Echvi_1941: Echvi_1941 - hypothetical protein, at 2,285,099 to 2,285,353
_1941
Echvi_1942: Echvi_1942 - Bacteroides conjugative transposon TraK protein, at 2,285,350 to 2,285,967
_1942
Echvi_1943: Echvi_1943 - Bacteroides conjugative transposon TraJ protein, at 2,285,971 to 2,286,948
_1943
Position (kb)
2285
2286 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2284.108 kb on + strand, within Echvi_1940 at 2284.108 kb on + strand, within Echvi_1940 at 2284.156 kb on + strand, within Echvi_1940 at 2284.168 kb on + strand, within Echvi_1940 at 2284.195 kb on - strand, within Echvi_1940 at 2284.201 kb on + strand, within Echvi_1940 at 2284.389 kb on + strand, within Echvi_1940 at 2284.390 kb on - strand, within Echvi_1940 at 2284.519 kb on + strand, within Echvi_1940 at 2284.519 kb on + strand, within Echvi_1940 at 2284.520 kb on - strand, within Echvi_1940 at 2284.902 kb on - strand, within Echvi_1940 at 2284.902 kb on - strand, within Echvi_1940 at 2284.903 kb on + strand, within Echvi_1940 at 2284.903 kb on + strand, within Echvi_1940 at 2284.904 kb on - strand, within Echvi_1940 at 2284.930 kb on - strand, within Echvi_1940 at 2285.073 kb on + strand at 2285.131 kb on + strand, within Echvi_1941 at 2285.133 kb on + strand, within Echvi_1941 at 2285.133 kb on + strand, within Echvi_1941 at 2285.133 kb on + strand, within Echvi_1941 at 2285.134 kb on - strand, within Echvi_1941 at 2285.153 kb on - strand, within Echvi_1941 at 2285.264 kb on + strand, within Echvi_1941 at 2285.325 kb on + strand, within Echvi_1941 at 2285.336 kb on + strand at 2285.513 kb on + strand, within Echvi_1942 at 2285.516 kb on + strand, within Echvi_1942 at 2285.548 kb on + strand, within Echvi_1942 at 2285.548 kb on + strand, within Echvi_1942 at 2285.606 kb on + strand, within Echvi_1942 at 2285.663 kb on + strand, within Echvi_1942 at 2285.740 kb on - strand, within Echvi_1942 at 2285.742 kb on + strand, within Echvi_1942 at 2285.742 kb on + strand, within Echvi_1942 at 2285.743 kb on - strand, within Echvi_1942 at 2285.823 kb on - strand, within Echvi_1942 at 2285.823 kb on - strand, within Echvi_1942 at 2285.846 kb on - strand, within Echvi_1942 at 2285.967 kb on + strand at 2285.970 kb on - strand at 2285.970 kb on - strand at 2286.039 kb on + strand at 2286.186 kb on + strand, within Echvi_1943 at 2286.187 kb on - strand, within Echvi_1943 at 2286.196 kb on + strand, within Echvi_1943 at 2286.196 kb on + strand, within Echvi_1943 at 2286.258 kb on - strand, within Echvi_1943 at 2286.283 kb on - strand, within Echvi_1943
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.01 mg/ml remove 2,284,108 + Echvi_1940 0.20 -0.5 2,284,108 + Echvi_1940 0.20 -0.1 2,284,156 + Echvi_1940 0.24 +0.0 2,284,168 + Echvi_1940 0.25 -1.7 2,284,195 - Echvi_1940 0.27 +1.7 2,284,201 + Echvi_1940 0.28 -1.0 2,284,389 + Echvi_1940 0.43 +1.0 2,284,390 - Echvi_1940 0.43 +1.5 2,284,519 + Echvi_1940 0.53 +0.9 2,284,519 + Echvi_1940 0.53 -1.2 2,284,520 - Echvi_1940 0.53 +0.6 2,284,902 - Echvi_1940 0.83 -0.9 2,284,902 - Echvi_1940 0.83 -1.7 2,284,903 + Echvi_1940 0.83 +0.6 2,284,903 + Echvi_1940 0.83 +1.2 2,284,904 - Echvi_1940 0.84 -0.4 2,284,930 - Echvi_1940 0.86 +3.1 2,285,073 + +0.9 2,285,131 + Echvi_1941 0.13 -1.8 2,285,133 + Echvi_1941 0.13 -0.3 2,285,133 + Echvi_1941 0.13 +0.4 2,285,133 + Echvi_1941 0.13 -0.1 2,285,134 - Echvi_1941 0.14 -0.8 2,285,153 - Echvi_1941 0.21 -0.0 2,285,264 + Echvi_1941 0.65 -0.6 2,285,325 + Echvi_1941 0.89 -1.1 2,285,336 + +0.2 2,285,513 + Echvi_1942 0.26 +0.9 2,285,516 + Echvi_1942 0.27 +0.6 2,285,548 + Echvi_1942 0.32 +1.5 2,285,548 + Echvi_1942 0.32 +0.7 2,285,606 + Echvi_1942 0.41 -0.2 2,285,663 + Echvi_1942 0.51 +0.2 2,285,740 - Echvi_1942 0.63 -0.1 2,285,742 + Echvi_1942 0.63 -0.3 2,285,742 + Echvi_1942 0.63 +0.1 2,285,743 - Echvi_1942 0.64 -3.1 2,285,823 - Echvi_1942 0.77 -3.1 2,285,823 - Echvi_1942 0.77 +1.3 2,285,846 - Echvi_1942 0.80 -3.0 2,285,967 + -1.1 2,285,970 - +1.7 2,285,970 - +0.1 2,286,039 + +1.2 2,286,186 + Echvi_1943 0.22 +0.2 2,286,187 - Echvi_1943 0.22 -0.7 2,286,196 + Echvi_1943 0.23 -0.0 2,286,196 + Echvi_1943 0.23 -0.3 2,286,258 - Echvi_1943 0.29 -0.2 2,286,283 - Echvi_1943 0.32 -1.7
Or see this region's nucleotide sequence