Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1588

Experiment: m.b. Thallium(I) acetate 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1587 and Echvi_1588 overlap by 4 nucleotidesEchvi_1588 and Echvi_1589 are separated by 8 nucleotides Echvi_1587: Echvi_1587 - Saccharopine dehydrogenase (NADP(+), L-lysine-forming) (EC 1.5.1.8); Saccharopine dehydrogenase (NAD(+), L-glutamate-forming) (EC 1.5.1.9) (from data), at 1,824,832 to 1,826,046 _1587 Echvi_1588: Echvi_1588 - deoxyribose-phosphate aldolase, at 1,826,043 to 1,826,708 _1588 Echvi_1589: Echvi_1589 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 1,826,717 to 1,827,991 _1589 Position (kb) 1826 1827Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1825.104 kb on + strand, within Echvi_1587at 1825.105 kb on - strand, within Echvi_1587at 1825.238 kb on + strand, within Echvi_1587at 1825.238 kb on + strand, within Echvi_1587at 1825.238 kb on + strand, within Echvi_1587at 1825.238 kb on + strand, within Echvi_1587at 1825.239 kb on - strand, within Echvi_1587at 1825.239 kb on - strand, within Echvi_1587at 1825.239 kb on - strand, within Echvi_1587at 1825.239 kb on - strand, within Echvi_1587at 1825.239 kb on - strand, within Echvi_1587at 1825.239 kb on - strand, within Echvi_1587at 1825.246 kb on + strand, within Echvi_1587at 1825.246 kb on + strand, within Echvi_1587at 1825.247 kb on - strand, within Echvi_1587at 1825.247 kb on - strand, within Echvi_1587at 1825.442 kb on + strand, within Echvi_1587at 1825.443 kb on - strand, within Echvi_1587at 1825.443 kb on - strand, within Echvi_1587at 1825.468 kb on + strand, within Echvi_1587at 1825.471 kb on + strand, within Echvi_1587at 1825.510 kb on + strand, within Echvi_1587at 1825.556 kb on - strand, within Echvi_1587at 1825.590 kb on + strand, within Echvi_1587at 1825.651 kb on - strand, within Echvi_1587at 1825.651 kb on - strand, within Echvi_1587at 1825.690 kb on - strand, within Echvi_1587at 1825.777 kb on + strand, within Echvi_1587at 1825.777 kb on + strand, within Echvi_1587at 1825.777 kb on + strand, within Echvi_1587at 1825.778 kb on - strand, within Echvi_1587at 1825.952 kb on + strandat 1825.996 kb on + strandat 1825.996 kb on + strandat 1825.997 kb on - strandat 1826.057 kb on + strandat 1826.058 kb on - strandat 1826.058 kb on - strandat 1826.058 kb on - strandat 1826.058 kb on - strandat 1826.058 kb on - strandat 1826.061 kb on + strandat 1826.062 kb on - strandat 1826.065 kb on + strandat 1826.065 kb on + strandat 1826.136 kb on + strand, within Echvi_1588at 1826.137 kb on - strand, within Echvi_1588at 1826.201 kb on + strand, within Echvi_1588at 1826.202 kb on - strand, within Echvi_1588at 1826.202 kb on - strand, within Echvi_1588at 1826.227 kb on + strand, within Echvi_1588at 1826.245 kb on - strand, within Echvi_1588at 1826.345 kb on + strand, within Echvi_1588at 1826.345 kb on + strand, within Echvi_1588at 1826.433 kb on + strand, within Echvi_1588at 1826.465 kb on + strand, within Echvi_1588at 1826.492 kb on + strand, within Echvi_1588at 1826.602 kb on + strand, within Echvi_1588at 1826.603 kb on - strand, within Echvi_1588at 1826.699 kb on - strandat 1826.738 kb on - strandat 1826.744 kb on + strandat 1826.744 kb on + strandat 1826.744 kb on + strandat 1826.797 kb on + strandat 1826.797 kb on + strandat 1826.798 kb on - strandat 1826.798 kb on - strandat 1826.846 kb on - strand, within Echvi_1589at 1826.846 kb on - strand, within Echvi_1589at 1826.846 kb on - strand, within Echvi_1589at 1826.846 kb on - strand, within Echvi_1589at 1826.846 kb on - strand, within Echvi_1589at 1826.862 kb on + strand, within Echvi_1589at 1826.862 kb on + strand, within Echvi_1589at 1826.862 kb on + strand, within Echvi_1589at 1826.862 kb on + strand, within Echvi_1589at 1826.863 kb on - strand, within Echvi_1589at 1826.863 kb on - strand, within Echvi_1589at 1826.863 kb on - strand, within Echvi_1589at 1826.899 kb on + strand, within Echvi_1589at 1826.910 kb on - strand, within Echvi_1589at 1826.926 kb on + strand, within Echvi_1589at 1826.926 kb on + strand, within Echvi_1589at 1826.961 kb on - strand, within Echvi_1589at 1826.961 kb on - strand, within Echvi_1589at 1827.008 kb on - strand, within Echvi_1589at 1827.044 kb on + strand, within Echvi_1589at 1827.063 kb on + strand, within Echvi_1589at 1827.064 kb on - strand, within Echvi_1589at 1827.068 kb on + strand, within Echvi_1589at 1827.122 kb on + strand, within Echvi_1589at 1827.123 kb on - strand, within Echvi_1589at 1827.213 kb on + strand, within Echvi_1589at 1827.213 kb on + strand, within Echvi_1589at 1827.222 kb on + strand, within Echvi_1589at 1827.222 kb on + strand, within Echvi_1589at 1827.222 kb on + strand, within Echvi_1589at 1827.223 kb on - strand, within Echvi_1589at 1827.223 kb on - strand, within Echvi_1589at 1827.266 kb on - strand, within Echvi_1589at 1827.289 kb on - strand, within Echvi_1589at 1827.289 kb on - strand, within Echvi_1589at 1827.320 kb on - strand, within Echvi_1589at 1827.330 kb on - strand, within Echvi_1589at 1827.354 kb on - strand, within Echvi_1589at 1827.354 kb on - strand, within Echvi_1589at 1827.378 kb on + strand, within Echvi_1589at 1827.387 kb on + strand, within Echvi_1589at 1827.387 kb on + strand, within Echvi_1589at 1827.437 kb on - strand, within Echvi_1589at 1827.452 kb on - strand, within Echvi_1589at 1827.476 kb on + strand, within Echvi_1589at 1827.476 kb on + strand, within Echvi_1589at 1827.477 kb on - strand, within Echvi_1589at 1827.542 kb on + strand, within Echvi_1589at 1827.544 kb on + strand, within Echvi_1589at 1827.545 kb on - strand, within Echvi_1589at 1827.587 kb on + strand, within Echvi_1589at 1827.588 kb on - strand, within Echvi_1589at 1827.641 kb on + strand, within Echvi_1589at 1827.684 kb on - strand, within Echvi_1589

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.01 mg/ml
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1,825,104 + Echvi_1587 0.22 -1.3
1,825,105 - Echvi_1587 0.22 -1.0
1,825,238 + Echvi_1587 0.33 +0.4
1,825,238 + Echvi_1587 0.33 -0.5
1,825,238 + Echvi_1587 0.33 -0.4
1,825,238 + Echvi_1587 0.33 -0.6
1,825,239 - Echvi_1587 0.33 +1.2
1,825,239 - Echvi_1587 0.33 -1.4
1,825,239 - Echvi_1587 0.33 -0.6
1,825,239 - Echvi_1587 0.33 -0.8
1,825,239 - Echvi_1587 0.33 -0.9
1,825,239 - Echvi_1587 0.33 -1.7
1,825,246 + Echvi_1587 0.34 -0.5
1,825,246 + Echvi_1587 0.34 -2.0
1,825,247 - Echvi_1587 0.34 -2.1
1,825,247 - Echvi_1587 0.34 -2.4
1,825,442 + Echvi_1587 0.50 -0.6
1,825,443 - Echvi_1587 0.50 +0.7
1,825,443 - Echvi_1587 0.50 +1.3
1,825,468 + Echvi_1587 0.52 +0.0
1,825,471 + Echvi_1587 0.53 +0.5
1,825,510 + Echvi_1587 0.56 -0.8
1,825,556 - Echvi_1587 0.60 -2.0
1,825,590 + Echvi_1587 0.62 -0.4
1,825,651 - Echvi_1587 0.67 +0.5
1,825,651 - Echvi_1587 0.67 -0.2
1,825,690 - Echvi_1587 0.71 +0.6
1,825,777 + Echvi_1587 0.78 -0.2
1,825,777 + Echvi_1587 0.78 +0.4
1,825,777 + Echvi_1587 0.78 +1.9
1,825,778 - Echvi_1587 0.78 +1.3
1,825,952 + +0.2
1,825,996 + -0.5
1,825,996 + +0.3
1,825,997 - -0.3
1,826,057 + +1.8
1,826,058 - +0.2
1,826,058 - -0.5
1,826,058 - +1.2
1,826,058 - -1.0
1,826,058 - +0.1
1,826,061 + +0.7
1,826,062 - -1.2
1,826,065 + -0.6
1,826,065 + -0.2
1,826,136 + Echvi_1588 0.14 -0.8
1,826,137 - Echvi_1588 0.14 -0.9
1,826,201 + Echvi_1588 0.24 +1.3
1,826,202 - Echvi_1588 0.24 +1.1
1,826,202 - Echvi_1588 0.24 -1.1
1,826,227 + Echvi_1588 0.28 -1.9
1,826,245 - Echvi_1588 0.30 -1.6
1,826,345 + Echvi_1588 0.45 -1.0
1,826,345 + Echvi_1588 0.45 -1.9
1,826,433 + Echvi_1588 0.59 -1.7
1,826,465 + Echvi_1588 0.63 +0.8
1,826,492 + Echvi_1588 0.67 -1.2
1,826,602 + Echvi_1588 0.84 -1.0
1,826,603 - Echvi_1588 0.84 -0.3
1,826,699 - +0.0
1,826,738 - +0.3
1,826,744 + +0.6
1,826,744 + +0.5
1,826,744 + +1.3
1,826,797 + -1.8
1,826,797 + +0.6
1,826,798 - -0.9
1,826,798 - -1.6
1,826,846 - Echvi_1589 0.10 -1.8
1,826,846 - Echvi_1589 0.10 +1.7
1,826,846 - Echvi_1589 0.10 -0.3
1,826,846 - Echvi_1589 0.10 -0.5
1,826,846 - Echvi_1589 0.10 -0.6
1,826,862 + Echvi_1589 0.11 +0.6
1,826,862 + Echvi_1589 0.11 +0.9
1,826,862 + Echvi_1589 0.11 +0.1
1,826,862 + Echvi_1589 0.11 -0.3
1,826,863 - Echvi_1589 0.11 +1.1
1,826,863 - Echvi_1589 0.11 +0.4
1,826,863 - Echvi_1589 0.11 +0.4
1,826,899 + Echvi_1589 0.14 -1.2
1,826,910 - Echvi_1589 0.15 -0.9
1,826,926 + Echvi_1589 0.16 -0.8
1,826,926 + Echvi_1589 0.16 -0.9
1,826,961 - Echvi_1589 0.19 -1.1
1,826,961 - Echvi_1589 0.19 +1.4
1,827,008 - Echvi_1589 0.23 +1.2
1,827,044 + Echvi_1589 0.26 +0.7
1,827,063 + Echvi_1589 0.27 -2.4
1,827,064 - Echvi_1589 0.27 -1.0
1,827,068 + Echvi_1589 0.28 -0.6
1,827,122 + Echvi_1589 0.32 +0.3
1,827,123 - Echvi_1589 0.32 +1.5
1,827,213 + Echvi_1589 0.39 -1.4
1,827,213 + Echvi_1589 0.39 +0.9
1,827,222 + Echvi_1589 0.40 +1.0
1,827,222 + Echvi_1589 0.40 -1.4
1,827,222 + Echvi_1589 0.40 -2.7
1,827,223 - Echvi_1589 0.40 -0.1
1,827,223 - Echvi_1589 0.40 -0.5
1,827,266 - Echvi_1589 0.43 +0.2
1,827,289 - Echvi_1589 0.45 +0.6
1,827,289 - Echvi_1589 0.45 -1.6
1,827,320 - Echvi_1589 0.47 -0.7
1,827,330 - Echvi_1589 0.48 -0.5
1,827,354 - Echvi_1589 0.50 -1.1
1,827,354 - Echvi_1589 0.50 +0.1
1,827,378 + Echvi_1589 0.52 -0.1
1,827,387 + Echvi_1589 0.53 +1.0
1,827,387 + Echvi_1589 0.53 -2.6
1,827,437 - Echvi_1589 0.56 +0.0
1,827,452 - Echvi_1589 0.58 +0.5
1,827,476 + Echvi_1589 0.60 -0.7
1,827,476 + Echvi_1589 0.60 -2.3
1,827,477 - Echvi_1589 0.60 +0.7
1,827,542 + Echvi_1589 0.65 +0.7
1,827,544 + Echvi_1589 0.65 +0.2
1,827,545 - Echvi_1589 0.65 -0.3
1,827,587 + Echvi_1589 0.68 -0.3
1,827,588 - Echvi_1589 0.68 +1.1
1,827,641 + Echvi_1589 0.72 +0.0
1,827,684 - Echvi_1589 0.76 -3.0

Or see this region's nucleotide sequence