Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1094

Experiment: m.b. Thallium(I) acetate 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1092 and Echvi_1093 are separated by 4 nucleotidesEchvi_1093 and Echvi_1094 are separated by 134 nucleotidesEchvi_1094 and Echvi_1095 are separated by 46 nucleotidesEchvi_1095 and Echvi_1096 are separated by 11 nucleotides Echvi_1092: Echvi_1092 - Uncharacterized low-complexity proteins, at 1,253,129 to 1,253,698 _1092 Echvi_1093: Echvi_1093 - hypothetical protein, at 1,253,703 to 1,254,284 _1093 Echvi_1094: Echvi_1094 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 1,254,419 to 1,255,021 _1094 Echvi_1095: Echvi_1095 - nitrate transport ATP-binding subunits C and D, at 1,255,068 to 1,255,886 _1095 Echvi_1096: Echvi_1096 - nitrate transport ATP-binding subunits C and D, at 1,255,898 to 1,256,782 _1096 Position (kb) 1254 1255 1256Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1253.423 kb on + strand, within Echvi_1092at 1253.423 kb on + strand, within Echvi_1092at 1253.423 kb on + strand, within Echvi_1092at 1253.424 kb on - strand, within Echvi_1092at 1253.424 kb on - strand, within Echvi_1092at 1253.465 kb on - strand, within Echvi_1092at 1253.585 kb on - strand, within Echvi_1092at 1253.675 kb on - strandat 1253.679 kb on - strandat 1253.679 kb on - strandat 1253.684 kb on - strandat 1253.686 kb on + strandat 1253.686 kb on + strandat 1253.686 kb on + strandat 1253.686 kb on + strandat 1253.686 kb on + strandat 1253.705 kb on - strandat 1253.898 kb on + strand, within Echvi_1093at 1253.898 kb on + strand, within Echvi_1093at 1253.899 kb on - strand, within Echvi_1093at 1253.901 kb on + strand, within Echvi_1093at 1253.901 kb on + strand, within Echvi_1093at 1253.923 kb on - strand, within Echvi_1093at 1253.981 kb on - strand, within Echvi_1093at 1254.025 kb on + strand, within Echvi_1093at 1254.075 kb on - strand, within Echvi_1093at 1254.159 kb on - strand, within Echvi_1093at 1254.167 kb on + strand, within Echvi_1093at 1254.181 kb on + strand, within Echvi_1093at 1254.191 kb on + strand, within Echvi_1093at 1254.192 kb on - strand, within Echvi_1093at 1254.192 kb on - strand, within Echvi_1093at 1254.228 kb on + strandat 1254.273 kb on - strandat 1254.273 kb on - strandat 1254.273 kb on - strandat 1254.274 kb on + strandat 1254.274 kb on + strandat 1254.275 kb on - strandat 1254.285 kb on - strandat 1254.285 kb on - strandat 1254.302 kb on + strandat 1254.302 kb on + strandat 1254.416 kb on + strandat 1254.571 kb on + strand, within Echvi_1094at 1254.571 kb on + strand, within Echvi_1094at 1254.666 kb on + strand, within Echvi_1094at 1254.667 kb on - strand, within Echvi_1094at 1254.667 kb on - strand, within Echvi_1094at 1254.718 kb on + strand, within Echvi_1094at 1254.802 kb on + strand, within Echvi_1094at 1254.854 kb on + strand, within Echvi_1094at 1254.855 kb on - strand, within Echvi_1094at 1254.855 kb on - strand, within Echvi_1094at 1254.855 kb on - strand, within Echvi_1094at 1254.855 kb on - strand, within Echvi_1094at 1254.858 kb on + strand, within Echvi_1094at 1254.859 kb on - strand, within Echvi_1094at 1254.859 kb on - strand, within Echvi_1094at 1254.892 kb on + strand, within Echvi_1094at 1254.892 kb on + strand, within Echvi_1094at 1254.892 kb on + strand, within Echvi_1094at 1254.892 kb on + strand, within Echvi_1094at 1254.892 kb on + strand, within Echvi_1094at 1254.893 kb on - strand, within Echvi_1094at 1254.893 kb on - strand, within Echvi_1094at 1254.894 kb on + strand, within Echvi_1094at 1254.894 kb on + strand, within Echvi_1094at 1254.895 kb on - strand, within Echvi_1094at 1254.960 kb on - strand, within Echvi_1094at 1255.034 kb on + strandat 1255.034 kb on + strandat 1255.035 kb on - strandat 1255.056 kb on + strandat 1255.056 kb on + strandat 1255.057 kb on - strandat 1255.093 kb on + strandat 1255.109 kb on - strandat 1255.112 kb on - strandat 1255.189 kb on + strand, within Echvi_1095at 1255.356 kb on + strand, within Echvi_1095at 1255.362 kb on + strand, within Echvi_1095at 1255.363 kb on - strand, within Echvi_1095at 1255.477 kb on + strand, within Echvi_1095at 1255.478 kb on - strand, within Echvi_1095at 1255.481 kb on + strand, within Echvi_1095at 1255.482 kb on - strand, within Echvi_1095at 1255.482 kb on - strand, within Echvi_1095at 1255.482 kb on - strand, within Echvi_1095at 1255.521 kb on + strand, within Echvi_1095at 1255.521 kb on + strand, within Echvi_1095at 1255.521 kb on + strand, within Echvi_1095at 1255.522 kb on - strand, within Echvi_1095at 1255.573 kb on - strand, within Echvi_1095at 1255.573 kb on - strand, within Echvi_1095at 1255.573 kb on - strand, within Echvi_1095at 1255.635 kb on + strand, within Echvi_1095at 1255.635 kb on + strand, within Echvi_1095at 1255.636 kb on - strand, within Echvi_1095at 1255.636 kb on - strand, within Echvi_1095at 1255.749 kb on + strand, within Echvi_1095at 1255.749 kb on + strand, within Echvi_1095at 1255.749 kb on + strand, within Echvi_1095at 1255.750 kb on - strand, within Echvi_1095at 1255.750 kb on - strand, within Echvi_1095at 1255.750 kb on - strand, within Echvi_1095at 1255.754 kb on + strand, within Echvi_1095at 1255.774 kb on + strand, within Echvi_1095at 1255.774 kb on + strand, within Echvi_1095at 1255.775 kb on - strand, within Echvi_1095at 1255.775 kb on - strand, within Echvi_1095at 1255.775 kb on - strand, within Echvi_1095at 1255.795 kb on + strand, within Echvi_1095at 1255.795 kb on + strand, within Echvi_1095at 1255.796 kb on - strand, within Echvi_1095at 1255.796 kb on - strand, within Echvi_1095at 1255.796 kb on - strand, within Echvi_1095at 1255.796 kb on - strand, within Echvi_1095at 1255.796 kb on - strand, within Echvi_1095at 1255.796 kb on - strand, within Echvi_1095at 1255.796 kb on - strand, within Echvi_1095at 1255.872 kb on + strandat 1255.873 kb on - strandat 1255.873 kb on - strandat 1255.873 kb on - strandat 1255.875 kb on + strandat 1255.875 kb on + strandat 1255.899 kb on + strandat 1255.900 kb on - strandat 1255.905 kb on + strandat 1255.906 kb on - strandat 1255.906 kb on - strandat 1255.943 kb on + strandat 1255.944 kb on - strandat 1255.967 kb on + strandat 1255.983 kb on + strandat 1255.983 kb on + strandat 1255.983 kb on + strandat 1255.983 kb on + strandat 1255.984 kb on - strandat 1255.984 kb on - strandat 1255.984 kb on - strandat 1255.984 kb on - strandat 1255.984 kb on - strandat 1256.019 kb on - strand, within Echvi_1096at 1256.019 kb on - strand, within Echvi_1096at 1256.019 kb on - strand, within Echvi_1096

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.01 mg/ml
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1,253,423 + Echvi_1092 0.52 +0.1
1,253,423 + Echvi_1092 0.52 +1.2
1,253,423 + Echvi_1092 0.52 -2.1
1,253,424 - Echvi_1092 0.52 -0.0
1,253,424 - Echvi_1092 0.52 +0.7
1,253,465 - Echvi_1092 0.59 +0.4
1,253,585 - Echvi_1092 0.80 -0.0
1,253,675 - -0.5
1,253,679 - -0.8
1,253,679 - +0.6
1,253,684 - +0.6
1,253,686 + +0.4
1,253,686 + +0.2
1,253,686 + -2.0
1,253,686 + -0.2
1,253,686 + -0.9
1,253,705 - +0.2
1,253,898 + Echvi_1093 0.34 -0.1
1,253,898 + Echvi_1093 0.34 -0.3
1,253,899 - Echvi_1093 0.34 -0.5
1,253,901 + Echvi_1093 0.34 -0.4
1,253,901 + Echvi_1093 0.34 +1.0
1,253,923 - Echvi_1093 0.38 -2.0
1,253,981 - Echvi_1093 0.48 -0.1
1,254,025 + Echvi_1093 0.55 -2.1
1,254,075 - Echvi_1093 0.64 -2.3
1,254,159 - Echvi_1093 0.78 -0.3
1,254,167 + Echvi_1093 0.80 +1.1
1,254,181 + Echvi_1093 0.82 +1.3
1,254,191 + Echvi_1093 0.84 -0.5
1,254,192 - Echvi_1093 0.84 -2.4
1,254,192 - Echvi_1093 0.84 -1.3
1,254,228 + +0.0
1,254,273 - -2.5
1,254,273 - +1.4
1,254,273 - -0.5
1,254,274 + -2.1
1,254,274 + -1.1
1,254,275 - -1.1
1,254,285 - +1.4
1,254,285 - -0.8
1,254,302 + +0.9
1,254,302 + -0.0
1,254,416 + +0.3
1,254,571 + Echvi_1094 0.25 -1.4
1,254,571 + Echvi_1094 0.25 -0.0
1,254,666 + Echvi_1094 0.41 -0.9
1,254,667 - Echvi_1094 0.41 -0.8
1,254,667 - Echvi_1094 0.41 -0.0
1,254,718 + Echvi_1094 0.50 +0.1
1,254,802 + Echvi_1094 0.64 -0.3
1,254,854 + Echvi_1094 0.72 -1.6
1,254,855 - Echvi_1094 0.72 -2.3
1,254,855 - Echvi_1094 0.72 -0.2
1,254,855 - Echvi_1094 0.72 -2.6
1,254,855 - Echvi_1094 0.72 +1.4
1,254,858 + Echvi_1094 0.73 -1.5
1,254,859 - Echvi_1094 0.73 -0.8
1,254,859 - Echvi_1094 0.73 +0.1
1,254,892 + Echvi_1094 0.78 -1.3
1,254,892 + Echvi_1094 0.78 -0.6
1,254,892 + Echvi_1094 0.78 -0.4
1,254,892 + Echvi_1094 0.78 +0.1
1,254,892 + Echvi_1094 0.78 +0.1
1,254,893 - Echvi_1094 0.79 -0.8
1,254,893 - Echvi_1094 0.79 -1.9
1,254,894 + Echvi_1094 0.79 +0.0
1,254,894 + Echvi_1094 0.79 -0.8
1,254,895 - Echvi_1094 0.79 -0.3
1,254,960 - Echvi_1094 0.90 +0.4
1,255,034 + -0.9
1,255,034 + +0.2
1,255,035 - -0.9
1,255,056 + -2.5
1,255,056 + -0.5
1,255,057 - -0.4
1,255,093 + -0.6
1,255,109 - -0.0
1,255,112 - +0.5
1,255,189 + Echvi_1095 0.15 -0.6
1,255,356 + Echvi_1095 0.35 -1.8
1,255,362 + Echvi_1095 0.36 -0.2
1,255,363 - Echvi_1095 0.36 -1.0
1,255,477 + Echvi_1095 0.50 -0.3
1,255,478 - Echvi_1095 0.50 -0.5
1,255,481 + Echvi_1095 0.50 +0.4
1,255,482 - Echvi_1095 0.51 +2.5
1,255,482 - Echvi_1095 0.51 +1.4
1,255,482 - Echvi_1095 0.51 +0.4
1,255,521 + Echvi_1095 0.55 -2.3
1,255,521 + Echvi_1095 0.55 +0.4
1,255,521 + Echvi_1095 0.55 +0.2
1,255,522 - Echvi_1095 0.55 -1.6
1,255,573 - Echvi_1095 0.62 -1.4
1,255,573 - Echvi_1095 0.62 +1.6
1,255,573 - Echvi_1095 0.62 +1.5
1,255,635 + Echvi_1095 0.69 -0.9
1,255,635 + Echvi_1095 0.69 -1.1
1,255,636 - Echvi_1095 0.69 +1.0
1,255,636 - Echvi_1095 0.69 +0.5
1,255,749 + Echvi_1095 0.83 +0.8
1,255,749 + Echvi_1095 0.83 -0.3
1,255,749 + Echvi_1095 0.83 -0.5
1,255,750 - Echvi_1095 0.83 +0.3
1,255,750 - Echvi_1095 0.83 -0.3
1,255,750 - Echvi_1095 0.83 -1.3
1,255,754 + Echvi_1095 0.84 -0.1
1,255,774 + Echvi_1095 0.86 +2.6
1,255,774 + Echvi_1095 0.86 -0.2
1,255,775 - Echvi_1095 0.86 +1.5
1,255,775 - Echvi_1095 0.86 -0.5
1,255,775 - Echvi_1095 0.86 +1.4
1,255,795 + Echvi_1095 0.89 -3.3
1,255,795 + Echvi_1095 0.89 -1.2
1,255,796 - Echvi_1095 0.89 -0.4
1,255,796 - Echvi_1095 0.89 -1.0
1,255,796 - Echvi_1095 0.89 -0.3
1,255,796 - Echvi_1095 0.89 +0.2
1,255,796 - Echvi_1095 0.89 -1.7
1,255,796 - Echvi_1095 0.89 -0.1
1,255,796 - Echvi_1095 0.89 -0.6
1,255,872 + -0.3
1,255,873 - -1.8
1,255,873 - -0.1
1,255,873 - +0.9
1,255,875 + -0.4
1,255,875 + +1.2
1,255,899 + +0.4
1,255,900 - +2.7
1,255,905 + +2.6
1,255,906 - +0.7
1,255,906 - +0.9
1,255,943 + +0.9
1,255,944 - -0.6
1,255,967 + +1.6
1,255,983 + +0.3
1,255,983 + +0.9
1,255,983 + -1.7
1,255,983 + -0.1
1,255,984 - -1.2
1,255,984 - +0.8
1,255,984 - -2.1
1,255,984 - -0.4
1,255,984 - -1.8
1,256,019 - Echvi_1096 0.14 +2.3
1,256,019 - Echvi_1096 0.14 +0.1
1,256,019 - Echvi_1096 0.14 -0.0

Or see this region's nucleotide sequence