Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0854

Experiment: m.b. Thallium(I) acetate 0.01 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0853 and Echvi_0854 overlap by 1 nucleotidesEchvi_0854 and Echvi_0855 are separated by 1 nucleotidesEchvi_0855 and Echvi_0856 are separated by 116 nucleotides Echvi_0853: Echvi_0853 - Hemolysins and related proteins containing CBS domains, at 975,458 to 976,741 _0853 Echvi_0854: Echvi_0854 - hypothetical protein, at 976,741 to 976,953 _0854 Echvi_0855: Echvi_0855 - Protein of unknown function (DUF1239)., at 976,955 to 977,497 _0855 Echvi_0856: Echvi_0856 - hypothetical protein, at 977,614 to 978,918 _0856 Position (kb) 976 977Strain fitness (log2 ratio) -2 -1 0 1 2at 975.942 kb on + strand, within Echvi_0853at 975.962 kb on - strand, within Echvi_0853at 975.972 kb on + strand, within Echvi_0853at 975.972 kb on + strand, within Echvi_0853at 975.972 kb on + strand, within Echvi_0853at 975.972 kb on + strand, within Echvi_0853at 975.972 kb on + strand, within Echvi_0853at 975.972 kb on + strand, within Echvi_0853at 975.973 kb on - strand, within Echvi_0853at 976.030 kb on + strand, within Echvi_0853at 976.031 kb on - strand, within Echvi_0853at 976.031 kb on - strand, within Echvi_0853at 976.031 kb on - strand, within Echvi_0853at 976.088 kb on + strand, within Echvi_0853at 976.097 kb on - strand, within Echvi_0853at 976.103 kb on + strand, within Echvi_0853at 976.126 kb on + strand, within Echvi_0853at 976.127 kb on - strand, within Echvi_0853at 976.132 kb on + strand, within Echvi_0853at 976.132 kb on + strand, within Echvi_0853at 976.221 kb on + strand, within Echvi_0853at 976.222 kb on - strand, within Echvi_0853at 976.222 kb on - strand, within Echvi_0853at 976.297 kb on - strand, within Echvi_0853at 976.299 kb on + strand, within Echvi_0853at 976.299 kb on + strand, within Echvi_0853at 976.310 kb on - strand, within Echvi_0853at 976.310 kb on - strand, within Echvi_0853at 976.342 kb on + strand, within Echvi_0853at 976.343 kb on - strand, within Echvi_0853at 976.343 kb on - strand, within Echvi_0853at 976.354 kb on + strand, within Echvi_0853at 976.355 kb on - strand, within Echvi_0853at 976.360 kb on + strand, within Echvi_0853at 976.372 kb on + strand, within Echvi_0853at 976.397 kb on - strand, within Echvi_0853at 976.397 kb on - strand, within Echvi_0853at 976.402 kb on + strand, within Echvi_0853at 976.409 kb on + strand, within Echvi_0853at 976.506 kb on + strand, within Echvi_0853at 976.519 kb on + strand, within Echvi_0853at 976.524 kb on + strand, within Echvi_0853at 976.524 kb on + strand, within Echvi_0853at 976.524 kb on + strand, within Echvi_0853at 976.529 kb on + strand, within Echvi_0853at 976.530 kb on - strand, within Echvi_0853at 976.601 kb on + strand, within Echvi_0853at 976.602 kb on - strand, within Echvi_0853at 976.641 kb on - strandat 976.641 kb on - strandat 976.641 kb on - strandat 976.641 kb on - strandat 976.651 kb on + strandat 976.651 kb on + strandat 976.651 kb on + strandat 976.704 kb on - strandat 976.719 kb on + strandat 976.719 kb on + strandat 976.720 kb on - strandat 976.728 kb on + strandat 976.728 kb on + strandat 976.728 kb on + strandat 976.728 kb on + strandat 976.728 kb on + strandat 976.728 kb on + strandat 976.728 kb on + strandat 976.729 kb on - strandat 976.742 kb on + strandat 976.743 kb on - strandat 976.743 kb on - strandat 976.814 kb on + strand, within Echvi_0854at 976.814 kb on + strand, within Echvi_0854at 976.849 kb on - strand, within Echvi_0854at 976.869 kb on + strand, within Echvi_0854at 976.869 kb on + strand, within Echvi_0854at 976.900 kb on + strand, within Echvi_0854at 976.901 kb on - strand, within Echvi_0854at 976.901 kb on - strand, within Echvi_0854at 976.931 kb on - strand, within Echvi_0854at 976.931 kb on - strand, within Echvi_0854at 976.945 kb on + strandat 976.957 kb on - strandat 976.957 kb on - strandat 976.974 kb on - strandat 976.974 kb on - strandat 977.526 kb on - strandat 977.536 kb on - strandat 977.536 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.01 mg/ml
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975,942 + Echvi_0853 0.38 +0.2
975,962 - Echvi_0853 0.39 -2.0
975,972 + Echvi_0853 0.40 +1.4
975,972 + Echvi_0853 0.40 -0.5
975,972 + Echvi_0853 0.40 -0.9
975,972 + Echvi_0853 0.40 -0.9
975,972 + Echvi_0853 0.40 +0.5
975,972 + Echvi_0853 0.40 -0.0
975,973 - Echvi_0853 0.40 +0.7
976,030 + Echvi_0853 0.45 +0.6
976,031 - Echvi_0853 0.45 +0.1
976,031 - Echvi_0853 0.45 -0.2
976,031 - Echvi_0853 0.45 -0.3
976,088 + Echvi_0853 0.49 +0.4
976,097 - Echvi_0853 0.50 +2.0
976,103 + Echvi_0853 0.50 -2.0
976,126 + Echvi_0853 0.52 +0.2
976,127 - Echvi_0853 0.52 -0.1
976,132 + Echvi_0853 0.52 -1.3
976,132 + Echvi_0853 0.52 +0.0
976,221 + Echvi_0853 0.59 -0.8
976,222 - Echvi_0853 0.60 -0.8
976,222 - Echvi_0853 0.60 +1.0
976,297 - Echvi_0853 0.65 -1.6
976,299 + Echvi_0853 0.65 +1.1
976,299 + Echvi_0853 0.65 +1.0
976,310 - Echvi_0853 0.66 +0.2
976,310 - Echvi_0853 0.66 +2.0
976,342 + Echvi_0853 0.69 +0.0
976,343 - Echvi_0853 0.69 -0.4
976,343 - Echvi_0853 0.69 -0.3
976,354 + Echvi_0853 0.70 +1.0
976,355 - Echvi_0853 0.70 -0.4
976,360 + Echvi_0853 0.70 -0.3
976,372 + Echvi_0853 0.71 -0.3
976,397 - Echvi_0853 0.73 -0.1
976,397 - Echvi_0853 0.73 +0.3
976,402 + Echvi_0853 0.74 +1.9
976,409 + Echvi_0853 0.74 +0.5
976,506 + Echvi_0853 0.82 -0.4
976,519 + Echvi_0853 0.83 -0.1
976,524 + Echvi_0853 0.83 +1.0
976,524 + Echvi_0853 0.83 +1.8
976,524 + Echvi_0853 0.83 -0.1
976,529 + Echvi_0853 0.83 +0.1
976,530 - Echvi_0853 0.83 +1.1
976,601 + Echvi_0853 0.89 +1.3
976,602 - Echvi_0853 0.89 -1.0
976,641 - -0.3
976,641 - +1.3
976,641 - +1.9
976,641 - +0.8
976,651 + +0.6
976,651 + -1.5
976,651 + +1.4
976,704 - -0.6
976,719 + +0.1
976,719 + +0.7
976,720 - +0.8
976,728 + -0.9
976,728 + -0.2
976,728 + +0.2
976,728 + +0.1
976,728 + -0.2
976,728 + -0.9
976,728 + +0.6
976,729 - -1.6
976,742 + +0.4
976,743 - +0.1
976,743 - -0.4
976,814 + Echvi_0854 0.34 -1.9
976,814 + Echvi_0854 0.34 -1.4
976,849 - Echvi_0854 0.51 -1.1
976,869 + Echvi_0854 0.60 -0.1
976,869 + Echvi_0854 0.60 -1.4
976,900 + Echvi_0854 0.75 -0.2
976,901 - Echvi_0854 0.75 -1.3
976,901 - Echvi_0854 0.75 +0.4
976,931 - Echvi_0854 0.89 -1.5
976,931 - Echvi_0854 0.89 -0.3
976,945 + -2.4
976,957 - -0.3
976,957 - -0.2
976,974 - -0.9
976,974 - -1.1
977,526 - +1.4
977,536 - -0.4
977,536 - -1.1

Or see this region's nucleotide sequence