Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4090

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4087 and EX28DRAFT_4088 overlap by 4 nucleotidesEX28DRAFT_4088 and EX28DRAFT_4089 overlap by 53 nucleotidesEX28DRAFT_4089 and EX28DRAFT_4090 are separated by 2 nucleotidesEX28DRAFT_4090 and EX28DRAFT_4091 overlap by 4 nucleotidesEX28DRAFT_4091 and EX28DRAFT_4092 overlap by 4 nucleotides EX28DRAFT_4087: EX28DRAFT_4087 - Membrane transporters of cations and cationic drugs, at 63,086 to 63,421 _4087 EX28DRAFT_4088: EX28DRAFT_4088 - hypothetical protein, at 63,418 to 63,807 _4088 EX28DRAFT_4089: EX28DRAFT_4089 - Phosphopantetheinyl transferase, at 63,755 to 64,372 _4089 EX28DRAFT_4090: EX28DRAFT_4090 - 3-oxoacyl-(acyl-carrier-protein) synthase, at 64,375 to 65,604 _4090 EX28DRAFT_4091: EX28DRAFT_4091 - 3-oxoacyl-(acyl-carrier-protein) reductase, putative, at 65,601 to 66,332 _4091 EX28DRAFT_4092: EX28DRAFT_4092 - Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase, at 66,329 to 66,802 _4092 Position (kb) 64 65 66Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 63.805 kb on + strandat 63.826 kb on + strand, within EX28DRAFT_4089at 63.826 kb on + strand, within EX28DRAFT_4089at 63.827 kb on - strand, within EX28DRAFT_4089at 63.827 kb on - strand, within EX28DRAFT_4089at 63.872 kb on + strand, within EX28DRAFT_4089at 64.372 kb on + strandat 64.372 kb on + strandat 64.373 kb on - strandat 64.373 kb on - strandat 64.373 kb on - strandat 64.373 kb on - strandat 64.476 kb on + strandat 64.477 kb on - strandat 64.478 kb on + strandat 64.479 kb on - strandat 64.479 kb on - strandat 64.483 kb on + strandat 64.484 kb on - strandat 64.484 kb on - strandat 64.597 kb on - strand, within EX28DRAFT_4090at 64.607 kb on + strand, within EX28DRAFT_4090at 64.608 kb on - strand, within EX28DRAFT_4090at 64.643 kb on + strand, within EX28DRAFT_4090at 64.644 kb on - strand, within EX28DRAFT_4090at 64.710 kb on + strand, within EX28DRAFT_4090at 64.712 kb on + strand, within EX28DRAFT_4090at 64.713 kb on - strand, within EX28DRAFT_4090at 64.713 kb on - strand, within EX28DRAFT_4090at 64.713 kb on - strand, within EX28DRAFT_4090at 64.932 kb on + strand, within EX28DRAFT_4090at 64.957 kb on - strand, within EX28DRAFT_4090at 65.109 kb on + strand, within EX28DRAFT_4090at 65.110 kb on - strand, within EX28DRAFT_4090at 65.143 kb on + strand, within EX28DRAFT_4090at 65.198 kb on + strand, within EX28DRAFT_4090at 65.198 kb on + strand, within EX28DRAFT_4090at 65.198 kb on + strand, within EX28DRAFT_4090at 65.199 kb on - strand, within EX28DRAFT_4090at 65.199 kb on - strand, within EX28DRAFT_4090at 65.199 kb on - strand, within EX28DRAFT_4090at 65.217 kb on + strand, within EX28DRAFT_4090at 65.403 kb on + strand, within EX28DRAFT_4090at 65.404 kb on - strand, within EX28DRAFT_4090at 65.404 kb on - strand, within EX28DRAFT_4090at 65.415 kb on + strand, within EX28DRAFT_4090at 65.417 kb on + strand, within EX28DRAFT_4090at 65.417 kb on + strand, within EX28DRAFT_4090at 65.418 kb on - strand, within EX28DRAFT_4090at 65.477 kb on + strand, within EX28DRAFT_4090at 65.477 kb on + strand, within EX28DRAFT_4090at 65.477 kb on + strand, within EX28DRAFT_4090at 65.477 kb on + strand, within EX28DRAFT_4090at 65.477 kb on + strand, within EX28DRAFT_4090at 65.478 kb on - strand, within EX28DRAFT_4090at 65.478 kb on - strand, within EX28DRAFT_4090at 65.478 kb on - strand, within EX28DRAFT_4090at 65.478 kb on - strand, within EX28DRAFT_4090at 65.478 kb on - strand, within EX28DRAFT_4090at 65.478 kb on - strand, within EX28DRAFT_4090at 65.516 kb on + strandat 65.517 kb on - strandat 65.604 kb on + strandat 65.604 kb on + strandat 65.604 kb on + strandat 65.605 kb on - strandat 65.668 kb on + strandat 65.705 kb on + strand, within EX28DRAFT_4091at 65.943 kb on - strand, within EX28DRAFT_4091at 65.963 kb on + strand, within EX28DRAFT_4091at 65.964 kb on - strand, within EX28DRAFT_4091at 65.964 kb on - strand, within EX28DRAFT_4091at 65.984 kb on + strand, within EX28DRAFT_4091at 65.986 kb on + strand, within EX28DRAFT_4091at 66.081 kb on + strand, within EX28DRAFT_4091at 66.089 kb on - strand, within EX28DRAFT_4091at 66.389 kb on - strand, within EX28DRAFT_4092at 66.562 kb on + strand, within EX28DRAFT_4092

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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63,805 + -0.0
63,826 + EX28DRAFT_4089 0.11 -0.0
63,826 + EX28DRAFT_4089 0.11 -0.8
63,827 - EX28DRAFT_4089 0.12 -0.4
63,827 - EX28DRAFT_4089 0.12 -0.1
63,872 + EX28DRAFT_4089 0.19 -0.2
64,372 + +0.2
64,372 + +1.0
64,373 - +0.6
64,373 - -0.3
64,373 - -0.5
64,373 - -0.5
64,476 + +0.7
64,477 - -3.0
64,478 + -1.4
64,479 - -0.6
64,479 - +0.2
64,483 + -0.3
64,484 - -1.6
64,484 - +0.8
64,597 - EX28DRAFT_4090 0.18 +0.7
64,607 + EX28DRAFT_4090 0.19 -0.5
64,608 - EX28DRAFT_4090 0.19 -0.9
64,643 + EX28DRAFT_4090 0.22 +0.1
64,644 - EX28DRAFT_4090 0.22 +1.6
64,710 + EX28DRAFT_4090 0.27 -0.9
64,712 + EX28DRAFT_4090 0.27 -0.3
64,713 - EX28DRAFT_4090 0.27 -1.1
64,713 - EX28DRAFT_4090 0.27 +1.0
64,713 - EX28DRAFT_4090 0.27 -0.0
64,932 + EX28DRAFT_4090 0.45 +1.0
64,957 - EX28DRAFT_4090 0.47 -0.2
65,109 + EX28DRAFT_4090 0.60 +0.4
65,110 - EX28DRAFT_4090 0.60 +0.3
65,143 + EX28DRAFT_4090 0.62 -0.1
65,198 + EX28DRAFT_4090 0.67 -0.7
65,198 + EX28DRAFT_4090 0.67 -0.2
65,198 + EX28DRAFT_4090 0.67 +0.7
65,199 - EX28DRAFT_4090 0.67 -0.8
65,199 - EX28DRAFT_4090 0.67 -1.2
65,199 - EX28DRAFT_4090 0.67 -2.5
65,217 + EX28DRAFT_4090 0.68 +3.2
65,403 + EX28DRAFT_4090 0.84 -0.7
65,404 - EX28DRAFT_4090 0.84 +0.3
65,404 - EX28DRAFT_4090 0.84 -0.3
65,415 + EX28DRAFT_4090 0.85 -0.2
65,417 + EX28DRAFT_4090 0.85 -0.4
65,417 + EX28DRAFT_4090 0.85 -0.7
65,418 - EX28DRAFT_4090 0.85 +0.0
65,477 + EX28DRAFT_4090 0.90 +0.3
65,477 + EX28DRAFT_4090 0.90 -0.4
65,477 + EX28DRAFT_4090 0.90 +0.3
65,477 + EX28DRAFT_4090 0.90 -0.5
65,477 + EX28DRAFT_4090 0.90 +0.1
65,478 - EX28DRAFT_4090 0.90 -0.6
65,478 - EX28DRAFT_4090 0.90 -1.7
65,478 - EX28DRAFT_4090 0.90 -0.5
65,478 - EX28DRAFT_4090 0.90 +0.1
65,478 - EX28DRAFT_4090 0.90 +0.3
65,478 - EX28DRAFT_4090 0.90 +0.3
65,516 + -1.9
65,517 - -1.0
65,604 + +0.6
65,604 + -0.2
65,604 + -0.6
65,605 - -0.4
65,668 + +0.5
65,705 + EX28DRAFT_4091 0.14 -2.1
65,943 - EX28DRAFT_4091 0.47 -0.9
65,963 + EX28DRAFT_4091 0.49 -0.1
65,964 - EX28DRAFT_4091 0.50 +0.1
65,964 - EX28DRAFT_4091 0.50 -2.2
65,984 + EX28DRAFT_4091 0.52 +0.5
65,986 + EX28DRAFT_4091 0.53 -0.4
66,081 + EX28DRAFT_4091 0.66 -0.2
66,089 - EX28DRAFT_4091 0.67 +0.3
66,389 - EX28DRAFT_4092 0.13 -1.4
66,562 + EX28DRAFT_4092 0.49 -0.4

Or see this region's nucleotide sequence