Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3560

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3559 and EX28DRAFT_3560 are separated by 270 nucleotidesEX28DRAFT_3560 and EX28DRAFT_3561 are separated by 80 nucleotidesEX28DRAFT_3561 and EX28DRAFT_3562 overlap by 4 nucleotides EX28DRAFT_3559: EX28DRAFT_3559 - Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily, at 222,522 to 224,813 _3559 EX28DRAFT_3560: EX28DRAFT_3560 - Protein of unknown function (DUF2501), at 225,084 to 225,569 _3560 EX28DRAFT_3561: EX28DRAFT_3561 - DNA replication protein, at 225,650 to 226,387 _3561 EX28DRAFT_3562: EX28DRAFT_3562 - hypothetical protein, at 226,384 to 226,929 _3562 Position (kb) 225 226Strain fitness (log2 ratio) -1 0 1at 224.084 kb on + strand, within EX28DRAFT_3559at 224.084 kb on + strand, within EX28DRAFT_3559at 224.085 kb on - strand, within EX28DRAFT_3559at 224.183 kb on + strand, within EX28DRAFT_3559at 224.184 kb on - strand, within EX28DRAFT_3559at 224.311 kb on + strand, within EX28DRAFT_3559at 224.312 kb on - strand, within EX28DRAFT_3559at 224.317 kb on + strand, within EX28DRAFT_3559at 224.318 kb on - strand, within EX28DRAFT_3559at 224.365 kb on + strand, within EX28DRAFT_3559at 224.365 kb on + strand, within EX28DRAFT_3559at 224.365 kb on + strand, within EX28DRAFT_3559at 224.365 kb on + strand, within EX28DRAFT_3559at 224.365 kb on + strand, within EX28DRAFT_3559at 224.368 kb on + strand, within EX28DRAFT_3559at 224.368 kb on + strand, within EX28DRAFT_3559at 224.369 kb on - strand, within EX28DRAFT_3559at 224.484 kb on - strand, within EX28DRAFT_3559at 224.587 kb on + strandat 224.588 kb on - strandat 224.588 kb on - strandat 224.588 kb on - strandat 224.588 kb on - strandat 224.649 kb on - strandat 224.666 kb on - strandat 224.685 kb on - strandat 224.819 kb on + strandat 224.819 kb on + strandat 224.871 kb on + strandat 224.872 kb on - strandat 224.872 kb on - strandat 224.872 kb on - strandat 224.878 kb on + strandat 224.879 kb on - strandat 224.879 kb on - strandat 225.227 kb on + strand, within EX28DRAFT_3560at 225.228 kb on - strand, within EX28DRAFT_3560at 225.228 kb on - strand, within EX28DRAFT_3560at 225.229 kb on + strand, within EX28DRAFT_3560at 225.230 kb on - strand, within EX28DRAFT_3560at 225.230 kb on - strand, within EX28DRAFT_3560at 225.230 kb on - strand, within EX28DRAFT_3560at 225.230 kb on - strand, within EX28DRAFT_3560at 225.230 kb on - strand, within EX28DRAFT_3560at 225.230 kb on - strand, within EX28DRAFT_3560at 225.392 kb on + strand, within EX28DRAFT_3560at 225.393 kb on - strand, within EX28DRAFT_3560at 225.393 kb on - strand, within EX28DRAFT_3560at 225.393 kb on - strand, within EX28DRAFT_3560at 225.549 kb on + strandat 225.613 kb on - strandat 225.613 kb on - strandat 225.613 kb on - strandat 225.614 kb on + strandat 225.614 kb on + strandat 225.614 kb on + strandat 225.615 kb on - strandat 225.615 kb on - strandat 225.615 kb on - strandat 225.616 kb on + strandat 225.616 kb on + strandat 225.616 kb on + strandat 225.616 kb on + strandat 225.616 kb on + strandat 225.616 kb on + strandat 225.616 kb on + strandat 225.617 kb on - strandat 225.617 kb on - strandat 225.617 kb on - strandat 225.617 kb on - strandat 225.617 kb on - strandat 225.617 kb on - strandat 225.617 kb on - strandat 225.617 kb on - strandat 225.617 kb on - strandat 225.617 kb on - strandat 225.617 kb on - strandat 225.617 kb on - strandat 225.617 kb on - strandat 225.617 kb on - strandat 225.617 kb on - strandat 225.620 kb on + strandat 225.621 kb on - strandat 225.621 kb on - strandat 225.621 kb on - strandat 225.621 kb on - strandat 225.652 kb on - strandat 225.652 kb on - strandat 225.655 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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224,084 + EX28DRAFT_3559 0.68 +0.6
224,084 + EX28DRAFT_3559 0.68 +0.1
224,085 - EX28DRAFT_3559 0.68 +0.1
224,183 + EX28DRAFT_3559 0.72 +0.0
224,184 - EX28DRAFT_3559 0.73 +0.5
224,311 + EX28DRAFT_3559 0.78 -0.1
224,312 - EX28DRAFT_3559 0.78 -0.9
224,317 + EX28DRAFT_3559 0.78 +1.2
224,318 - EX28DRAFT_3559 0.78 -0.5
224,365 + EX28DRAFT_3559 0.80 -1.0
224,365 + EX28DRAFT_3559 0.80 +0.2
224,365 + EX28DRAFT_3559 0.80 -0.7
224,365 + EX28DRAFT_3559 0.80 +1.1
224,365 + EX28DRAFT_3559 0.80 -1.2
224,368 + EX28DRAFT_3559 0.81 -0.4
224,368 + EX28DRAFT_3559 0.81 -0.1
224,369 - EX28DRAFT_3559 0.81 -0.0
224,484 - EX28DRAFT_3559 0.86 -0.2
224,587 + +0.6
224,588 - -0.1
224,588 - -0.1
224,588 - +0.5
224,588 - -0.4
224,649 - +0.2
224,666 - +0.2
224,685 - -0.3
224,819 + -0.3
224,819 + +0.3
224,871 + +0.0
224,872 - -0.1
224,872 - -0.5
224,872 - +0.1
224,878 + -0.0
224,879 - +0.3
224,879 - +0.1
225,227 + EX28DRAFT_3560 0.29 -1.0
225,228 - EX28DRAFT_3560 0.30 +0.0
225,228 - EX28DRAFT_3560 0.30 -0.3
225,229 + EX28DRAFT_3560 0.30 -0.3
225,230 - EX28DRAFT_3560 0.30 -0.3
225,230 - EX28DRAFT_3560 0.30 -0.5
225,230 - EX28DRAFT_3560 0.30 -0.8
225,230 - EX28DRAFT_3560 0.30 +0.4
225,230 - EX28DRAFT_3560 0.30 +0.5
225,230 - EX28DRAFT_3560 0.30 -0.7
225,392 + EX28DRAFT_3560 0.63 -1.0
225,393 - EX28DRAFT_3560 0.64 -0.6
225,393 - EX28DRAFT_3560 0.64 -0.2
225,393 - EX28DRAFT_3560 0.64 -1.6
225,549 + -0.1
225,613 - -0.8
225,613 - -0.6
225,613 - -0.6
225,614 + +0.3
225,614 + +0.4
225,614 + -1.4
225,615 - -0.6
225,615 - -0.3
225,615 - -0.7
225,616 + +0.3
225,616 + +0.0
225,616 + +0.6
225,616 + -0.2
225,616 + -0.1
225,616 + -0.6
225,616 + +0.3
225,617 - +0.5
225,617 - +0.0
225,617 - +0.2
225,617 - +0.8
225,617 - -0.4
225,617 - +0.8
225,617 - -0.7
225,617 - -0.3
225,617 - +0.4
225,617 - +0.4
225,617 - +0.5
225,617 - -0.9
225,617 - -0.7
225,617 - -1.3
225,617 - -0.0
225,620 + -0.6
225,621 - +0.4
225,621 - -1.6
225,621 - +0.0
225,621 - -0.3
225,652 - -0.1
225,652 - +0.7
225,655 - +0.3

Or see this region's nucleotide sequence