Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3317

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3316 and EX28DRAFT_3317 overlap by 85 nucleotidesEX28DRAFT_3317 and EX28DRAFT_3318 are separated by 387 nucleotides EX28DRAFT_3316: EX28DRAFT_3316 - diguanylate cyclase (GGDEF) domain, at 615,117 to 617,198 _3316 EX28DRAFT_3317: EX28DRAFT_3317 - transcriptional regulator, TetR family, at 617,114 to 617,833 _3317 EX28DRAFT_3318: EX28DRAFT_3318 - RND family efflux transporter, MFP subunit, at 618,221 to 619,360 _3318 Position (kb) 617 618Strain fitness (log2 ratio) -1 0 1 2at 616.130 kb on + strand, within EX28DRAFT_3316at 616.253 kb on - strand, within EX28DRAFT_3316at 616.320 kb on - strand, within EX28DRAFT_3316at 616.338 kb on + strand, within EX28DRAFT_3316at 616.352 kb on + strand, within EX28DRAFT_3316at 616.471 kb on - strand, within EX28DRAFT_3316at 616.542 kb on - strand, within EX28DRAFT_3316at 616.831 kb on + strand, within EX28DRAFT_3316at 616.911 kb on + strand, within EX28DRAFT_3316at 616.994 kb on + strandat 616.995 kb on - strandat 617.126 kb on + strandat 617.149 kb on + strandat 617.149 kb on + strandat 617.150 kb on - strandat 617.150 kb on - strandat 617.150 kb on - strandat 617.150 kb on - strandat 617.150 kb on - strandat 617.180 kb on - strandat 617.196 kb on + strandat 617.196 kb on + strandat 617.197 kb on - strandat 617.243 kb on + strand, within EX28DRAFT_3317at 617.243 kb on + strand, within EX28DRAFT_3317at 617.282 kb on - strand, within EX28DRAFT_3317at 617.315 kb on + strand, within EX28DRAFT_3317at 617.316 kb on - strand, within EX28DRAFT_3317at 617.415 kb on - strand, within EX28DRAFT_3317at 617.467 kb on + strand, within EX28DRAFT_3317at 617.488 kb on + strand, within EX28DRAFT_3317at 617.537 kb on - strand, within EX28DRAFT_3317at 617.538 kb on + strand, within EX28DRAFT_3317at 617.538 kb on + strand, within EX28DRAFT_3317at 617.539 kb on - strand, within EX28DRAFT_3317at 617.711 kb on - strand, within EX28DRAFT_3317at 617.890 kb on - strandat 618.038 kb on + strandat 618.156 kb on + strandat 618.344 kb on - strand, within EX28DRAFT_3318at 618.474 kb on + strand, within EX28DRAFT_3318at 618.475 kb on - strand, within EX28DRAFT_3318at 618.495 kb on - strand, within EX28DRAFT_3318at 618.515 kb on + strand, within EX28DRAFT_3318at 618.516 kb on - strand, within EX28DRAFT_3318at 618.527 kb on + strand, within EX28DRAFT_3318at 618.624 kb on - strand, within EX28DRAFT_3318at 618.624 kb on - strand, within EX28DRAFT_3318at 618.641 kb on + strand, within EX28DRAFT_3318at 618.641 kb on + strand, within EX28DRAFT_3318at 618.718 kb on + strand, within EX28DRAFT_3318at 618.719 kb on - strand, within EX28DRAFT_3318at 618.719 kb on - strand, within EX28DRAFT_3318at 618.719 kb on - strand, within EX28DRAFT_3318

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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616,130 + EX28DRAFT_3316 0.49 +0.0
616,253 - EX28DRAFT_3316 0.55 +0.3
616,320 - EX28DRAFT_3316 0.58 -0.3
616,338 + EX28DRAFT_3316 0.59 +0.0
616,352 + EX28DRAFT_3316 0.59 +2.0
616,471 - EX28DRAFT_3316 0.65 +0.0
616,542 - EX28DRAFT_3316 0.68 +0.8
616,831 + EX28DRAFT_3316 0.82 +0.1
616,911 + EX28DRAFT_3316 0.86 -1.0
616,994 + -1.0
616,995 - -0.2
617,126 + +0.3
617,149 + +0.1
617,149 + -1.4
617,150 - -0.0
617,150 - -0.5
617,150 - +0.0
617,150 - +0.1
617,150 - +0.1
617,180 - +0.9
617,196 + -0.4
617,196 + -0.3
617,197 - -0.2
617,243 + EX28DRAFT_3317 0.18 +0.7
617,243 + EX28DRAFT_3317 0.18 -0.3
617,282 - EX28DRAFT_3317 0.23 -0.9
617,315 + EX28DRAFT_3317 0.28 -0.8
617,316 - EX28DRAFT_3317 0.28 -1.6
617,415 - EX28DRAFT_3317 0.42 -1.1
617,467 + EX28DRAFT_3317 0.49 -1.0
617,488 + EX28DRAFT_3317 0.52 -0.5
617,537 - EX28DRAFT_3317 0.59 -0.3
617,538 + EX28DRAFT_3317 0.59 -1.0
617,538 + EX28DRAFT_3317 0.59 +0.2
617,539 - EX28DRAFT_3317 0.59 +0.5
617,711 - EX28DRAFT_3317 0.83 -0.7
617,890 - -0.1
618,038 + -0.1
618,156 + +0.6
618,344 - EX28DRAFT_3318 0.11 +0.0
618,474 + EX28DRAFT_3318 0.22 -0.2
618,475 - EX28DRAFT_3318 0.22 -0.5
618,495 - EX28DRAFT_3318 0.24 -0.3
618,515 + EX28DRAFT_3318 0.26 -0.2
618,516 - EX28DRAFT_3318 0.26 +0.3
618,527 + EX28DRAFT_3318 0.27 +0.1
618,624 - EX28DRAFT_3318 0.35 -0.8
618,624 - EX28DRAFT_3318 0.35 +0.1
618,641 + EX28DRAFT_3318 0.37 -0.4
618,641 + EX28DRAFT_3318 0.37 +0.5
618,718 + EX28DRAFT_3318 0.44 -0.1
618,719 - EX28DRAFT_3318 0.44 -1.1
618,719 - EX28DRAFT_3318 0.44 +1.1
618,719 - EX28DRAFT_3318 0.44 -0.5

Or see this region's nucleotide sequence