Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2362

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2361 and EX28DRAFT_2362 are separated by 19 nucleotidesEX28DRAFT_2362 and EX28DRAFT_2363 overlap by 4 nucleotides EX28DRAFT_2361: EX28DRAFT_2361 - ABC-type sugar transport system, periplasmic component, at 2,381,493 to 2,382,557 _2361 EX28DRAFT_2362: EX28DRAFT_2362 - Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components, at 2,382,577 to 2,383,572 _2362 EX28DRAFT_2363: EX28DRAFT_2363 - ABC-type sugar transport system, ATPase component, at 2,383,569 to 2,385,071 _2363 Position (kb) 2382 2383 2384Strain fitness (log2 ratio) -1 0 1at 2382.017 kb on - strand, within EX28DRAFT_2361at 2382.266 kb on + strand, within EX28DRAFT_2361at 2382.277 kb on + strand, within EX28DRAFT_2361at 2382.277 kb on + strand, within EX28DRAFT_2361at 2382.393 kb on - strand, within EX28DRAFT_2361at 2382.590 kb on - strandat 2382.590 kb on - strandat 2382.593 kb on + strandat 2382.631 kb on + strandat 2382.631 kb on + strandat 2382.632 kb on - strandat 2382.632 kb on - strandat 2382.634 kb on - strandat 2382.634 kb on - strandat 2382.647 kb on + strandat 2382.648 kb on - strandat 2382.947 kb on + strand, within EX28DRAFT_2362at 2382.947 kb on + strand, within EX28DRAFT_2362at 2383.062 kb on + strand, within EX28DRAFT_2362at 2383.127 kb on + strand, within EX28DRAFT_2362at 2383.127 kb on + strand, within EX28DRAFT_2362at 2383.188 kb on + strand, within EX28DRAFT_2362at 2383.216 kb on - strand, within EX28DRAFT_2362at 2383.381 kb on - strand, within EX28DRAFT_2362at 2383.509 kb on - strandat 2383.595 kb on - strandat 2383.597 kb on + strandat 2383.602 kb on + strandat 2383.603 kb on - strandat 2383.603 kb on - strandat 2383.603 kb on - strandat 2383.714 kb on + strandat 2383.714 kb on + strandat 2384.329 kb on + strand, within EX28DRAFT_2363at 2384.478 kb on - strand, within EX28DRAFT_2363at 2384.505 kb on + strand, within EX28DRAFT_2363

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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2,382,017 - EX28DRAFT_2361 0.49 -0.3
2,382,266 + EX28DRAFT_2361 0.73 -0.0
2,382,277 + EX28DRAFT_2361 0.74 +0.3
2,382,277 + EX28DRAFT_2361 0.74 +0.2
2,382,393 - EX28DRAFT_2361 0.85 +1.7
2,382,590 - -0.0
2,382,590 - +1.1
2,382,593 + -0.8
2,382,631 + -0.5
2,382,631 + -0.8
2,382,632 - -0.1
2,382,632 - -0.4
2,382,634 - -0.6
2,382,634 - +0.5
2,382,647 + -0.3
2,382,648 - +0.5
2,382,947 + EX28DRAFT_2362 0.37 +0.4
2,382,947 + EX28DRAFT_2362 0.37 -0.8
2,383,062 + EX28DRAFT_2362 0.49 -0.0
2,383,127 + EX28DRAFT_2362 0.55 +0.2
2,383,127 + EX28DRAFT_2362 0.55 +0.2
2,383,188 + EX28DRAFT_2362 0.61 +1.4
2,383,216 - EX28DRAFT_2362 0.64 +0.5
2,383,381 - EX28DRAFT_2362 0.81 +0.2
2,383,509 - +0.9
2,383,595 - +0.5
2,383,597 + +0.8
2,383,602 + -0.3
2,383,603 - -0.0
2,383,603 - -0.4
2,383,603 - -0.0
2,383,714 + -0.2
2,383,714 + +0.1
2,384,329 + EX28DRAFT_2363 0.51 -1.2
2,384,478 - EX28DRAFT_2363 0.60 +0.4
2,384,505 + EX28DRAFT_2363 0.62 -0.2

Or see this region's nucleotide sequence