Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2361 and EX28DRAFT_2362 are separated by 19 nucleotides EX28DRAFT_2362 and EX28DRAFT_2363 overlap by 4 nucleotides
EX28DRAFT_2361: EX28DRAFT_2361 - ABC-type sugar transport system, periplasmic component, at 2,381,493 to 2,382,557
_2361
EX28DRAFT_2362: EX28DRAFT_2362 - Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components, at 2,382,577 to 2,383,572
_2362
EX28DRAFT_2363: EX28DRAFT_2363 - ABC-type sugar transport system, ATPase component, at 2,383,569 to 2,385,071
_2363
Position (kb)
2382
2383
2384 Strain fitness (log2 ratio)
-1
0
1 at 2382.017 kb on - strand, within EX28DRAFT_2361 at 2382.266 kb on + strand, within EX28DRAFT_2361 at 2382.277 kb on + strand, within EX28DRAFT_2361 at 2382.277 kb on + strand, within EX28DRAFT_2361 at 2382.393 kb on - strand, within EX28DRAFT_2361 at 2382.590 kb on - strand at 2382.590 kb on - strand at 2382.593 kb on + strand at 2382.631 kb on + strand at 2382.631 kb on + strand at 2382.632 kb on - strand at 2382.632 kb on - strand at 2382.634 kb on - strand at 2382.634 kb on - strand at 2382.647 kb on + strand at 2382.648 kb on - strand at 2382.947 kb on + strand, within EX28DRAFT_2362 at 2382.947 kb on + strand, within EX28DRAFT_2362 at 2383.062 kb on + strand, within EX28DRAFT_2362 at 2383.127 kb on + strand, within EX28DRAFT_2362 at 2383.127 kb on + strand, within EX28DRAFT_2362 at 2383.188 kb on + strand, within EX28DRAFT_2362 at 2383.216 kb on - strand, within EX28DRAFT_2362 at 2383.381 kb on - strand, within EX28DRAFT_2362 at 2383.509 kb on - strand at 2383.595 kb on - strand at 2383.597 kb on + strand at 2383.602 kb on + strand at 2383.603 kb on - strand at 2383.603 kb on - strand at 2383.603 kb on - strand at 2383.714 kb on + strand at 2383.714 kb on + strand at 2384.329 kb on + strand, within EX28DRAFT_2363 at 2384.478 kb on - strand, within EX28DRAFT_2363 at 2384.505 kb on + strand, within EX28DRAFT_2363
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 2,382,017 - EX28DRAFT_2361 0.49 -0.3 2,382,266 + EX28DRAFT_2361 0.73 -0.0 2,382,277 + EX28DRAFT_2361 0.74 +0.3 2,382,277 + EX28DRAFT_2361 0.74 +0.2 2,382,393 - EX28DRAFT_2361 0.85 +1.7 2,382,590 - -0.0 2,382,590 - +1.1 2,382,593 + -0.8 2,382,631 + -0.5 2,382,631 + -0.8 2,382,632 - -0.1 2,382,632 - -0.4 2,382,634 - -0.6 2,382,634 - +0.5 2,382,647 + -0.3 2,382,648 - +0.5 2,382,947 + EX28DRAFT_2362 0.37 +0.4 2,382,947 + EX28DRAFT_2362 0.37 -0.8 2,383,062 + EX28DRAFT_2362 0.49 -0.0 2,383,127 + EX28DRAFT_2362 0.55 +0.2 2,383,127 + EX28DRAFT_2362 0.55 +0.2 2,383,188 + EX28DRAFT_2362 0.61 +1.4 2,383,216 - EX28DRAFT_2362 0.64 +0.5 2,383,381 - EX28DRAFT_2362 0.81 +0.2 2,383,509 - +0.9 2,383,595 - +0.5 2,383,597 + +0.8 2,383,602 + -0.3 2,383,603 - -0.0 2,383,603 - -0.4 2,383,603 - -0.0 2,383,714 + -0.2 2,383,714 + +0.1 2,384,329 + EX28DRAFT_2363 0.51 -1.2 2,384,478 - EX28DRAFT_2363 0.60 +0.4 2,384,505 + EX28DRAFT_2363 0.62 -0.2
Or see this region's nucleotide sequence