Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2084

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2082 and EX28DRAFT_2083 are separated by 17 nucleotidesEX28DRAFT_2083 and EX28DRAFT_2084 are separated by 258 nucleotidesEX28DRAFT_2084 and EX28DRAFT_2085 overlap by 4 nucleotidesEX28DRAFT_2085 and EX28DRAFT_2086 are separated by 97 nucleotides EX28DRAFT_2082: EX28DRAFT_2082 - hypothetical protein, at 2,108,509 to 2,109,123 _2082 EX28DRAFT_2083: EX28DRAFT_2083 - hypothetical protein, at 2,109,141 to 2,109,764 _2083 EX28DRAFT_2084: EX28DRAFT_2084 - Negative regulator of beta-lactamase expression, at 2,110,023 to 2,110,853 _2084 EX28DRAFT_2085: EX28DRAFT_2085 - Uncharacterized conserved protein, at 2,110,850 to 2,111,173 _2085 EX28DRAFT_2086: EX28DRAFT_2086 - hypothetical protein, at 2,111,271 to 2,111,789 _2086 Position (kb) 2110 2111Strain fitness (log2 ratio) -2 -1 0 1at 2109.416 kb on + strand, within EX28DRAFT_2083at 2109.416 kb on + strand, within EX28DRAFT_2083at 2109.512 kb on - strand, within EX28DRAFT_2083at 2109.512 kb on - strand, within EX28DRAFT_2083at 2109.515 kb on + strand, within EX28DRAFT_2083at 2109.516 kb on - strand, within EX28DRAFT_2083at 2109.554 kb on + strand, within EX28DRAFT_2083at 2109.579 kb on - strand, within EX28DRAFT_2083at 2109.635 kb on + strand, within EX28DRAFT_2083at 2109.635 kb on + strand, within EX28DRAFT_2083at 2109.659 kb on + strand, within EX28DRAFT_2083at 2109.884 kb on - strandat 2109.901 kb on - strandat 2109.952 kb on + strandat 2109.996 kb on + strandat 2109.996 kb on + strandat 2110.334 kb on + strand, within EX28DRAFT_2084at 2110.397 kb on + strand, within EX28DRAFT_2084at 2110.639 kb on + strand, within EX28DRAFT_2084at 2110.702 kb on + strand, within EX28DRAFT_2084at 2110.722 kb on + strand, within EX28DRAFT_2084at 2110.722 kb on + strand, within EX28DRAFT_2084at 2110.723 kb on - strand, within EX28DRAFT_2084at 2111.125 kb on - strand, within EX28DRAFT_2085at 2111.133 kb on - strand, within EX28DRAFT_2085at 2111.234 kb on - strandat 2111.251 kb on + strandat 2111.252 kb on - strandat 2111.258 kb on + strandat 2111.259 kb on - strandat 2111.259 kb on - strandat 2111.418 kb on + strand, within EX28DRAFT_2086at 2111.418 kb on + strand, within EX28DRAFT_2086at 2111.530 kb on + strand, within EX28DRAFT_2086at 2111.531 kb on - strand, within EX28DRAFT_2086

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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2,109,416 + EX28DRAFT_2083 0.44 +0.3
2,109,416 + EX28DRAFT_2083 0.44 -0.4
2,109,512 - EX28DRAFT_2083 0.59 +0.1
2,109,512 - EX28DRAFT_2083 0.59 -1.0
2,109,515 + EX28DRAFT_2083 0.60 +0.3
2,109,516 - EX28DRAFT_2083 0.60 -0.2
2,109,554 + EX28DRAFT_2083 0.66 -0.7
2,109,579 - EX28DRAFT_2083 0.70 -1.7
2,109,635 + EX28DRAFT_2083 0.79 -0.4
2,109,635 + EX28DRAFT_2083 0.79 -1.5
2,109,659 + EX28DRAFT_2083 0.83 +0.7
2,109,884 - +0.4
2,109,901 - -0.3
2,109,952 + +0.1
2,109,996 + +0.8
2,109,996 + +0.1
2,110,334 + EX28DRAFT_2084 0.37 -0.7
2,110,397 + EX28DRAFT_2084 0.45 -0.2
2,110,639 + EX28DRAFT_2084 0.74 -0.0
2,110,702 + EX28DRAFT_2084 0.82 -1.1
2,110,722 + EX28DRAFT_2084 0.84 -1.7
2,110,722 + EX28DRAFT_2084 0.84 -1.8
2,110,723 - EX28DRAFT_2084 0.84 -1.2
2,111,125 - EX28DRAFT_2085 0.85 -0.3
2,111,133 - EX28DRAFT_2085 0.87 -0.4
2,111,234 - +0.4
2,111,251 + +0.8
2,111,252 - -1.6
2,111,258 + +0.0
2,111,259 - +0.8
2,111,259 - -0.4
2,111,418 + EX28DRAFT_2086 0.28 -0.3
2,111,418 + EX28DRAFT_2086 0.28 -0.5
2,111,530 + EX28DRAFT_2086 0.50 +0.3
2,111,531 - EX28DRAFT_2086 0.50 -0.2

Or see this region's nucleotide sequence