Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1478 and EX28DRAFT_1479 are separated by 210 nucleotides EX28DRAFT_1479 and EX28DRAFT_1480 are separated by 88 nucleotides EX28DRAFT_1480 and EX28DRAFT_1481 are separated by 14 nucleotides
EX28DRAFT_1478: EX28DRAFT_1478 - Pili and flagellar-assembly chaperone, PapD N-terminal domain, at 1,493,388 to 1,493,933
_1478
EX28DRAFT_1479: EX28DRAFT_1479 - hypothetical protein, at 1,494,144 to 1,494,767
_1479
EX28DRAFT_1480: EX28DRAFT_1480 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 1,494,856 to 1,495,467
_1480
EX28DRAFT_1481: EX28DRAFT_1481 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 1,495,482 to 1,496,111
_1481
Position (kb)
1494
1495 Strain fitness (log2 ratio)
-2
-1
0
1 at 1493.159 kb on - strand at 1493.679 kb on - strand, within EX28DRAFT_1478 at 1493.730 kb on - strand, within EX28DRAFT_1478 at 1493.748 kb on - strand, within EX28DRAFT_1478 at 1493.907 kb on - strand at 1493.909 kb on + strand at 1493.910 kb on - strand at 1493.931 kb on + strand at 1494.014 kb on - strand at 1494.306 kb on + strand, within EX28DRAFT_1479 at 1494.499 kb on - strand, within EX28DRAFT_1479 at 1494.499 kb on - strand, within EX28DRAFT_1479 at 1494.500 kb on + strand, within EX28DRAFT_1479 at 1494.505 kb on - strand, within EX28DRAFT_1479 at 1494.694 kb on + strand, within EX28DRAFT_1479 at 1494.815 kb on + strand at 1495.060 kb on + strand, within EX28DRAFT_1480 at 1495.106 kb on + strand, within EX28DRAFT_1480 at 1495.123 kb on - strand, within EX28DRAFT_1480 at 1495.198 kb on + strand, within EX28DRAFT_1480 at 1495.248 kb on + strand, within EX28DRAFT_1480 at 1495.345 kb on - strand, within EX28DRAFT_1480 at 1495.356 kb on + strand, within EX28DRAFT_1480 at 1495.448 kb on + strand at 1495.449 kb on - strand at 1495.452 kb on + strand at 1495.455 kb on + strand at 1495.461 kb on + strand at 1495.467 kb on + strand at 1495.622 kb on - strand, within EX28DRAFT_1481 at 1495.622 kb on - strand, within EX28DRAFT_1481 at 1495.698 kb on - strand, within EX28DRAFT_1481 at 1495.701 kb on + strand, within EX28DRAFT_1481 at 1495.727 kb on - strand, within EX28DRAFT_1481
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 1,493,159 - +1.3 1,493,679 - EX28DRAFT_1478 0.53 -1.4 1,493,730 - EX28DRAFT_1478 0.63 +0.3 1,493,748 - EX28DRAFT_1478 0.66 -0.2 1,493,907 - -0.3 1,493,909 + -0.1 1,493,910 - -0.4 1,493,931 + -0.6 1,494,014 - +0.4 1,494,306 + EX28DRAFT_1479 0.26 -1.6 1,494,499 - EX28DRAFT_1479 0.57 -0.4 1,494,499 - EX28DRAFT_1479 0.57 -2.1 1,494,500 + EX28DRAFT_1479 0.57 -0.6 1,494,505 - EX28DRAFT_1479 0.58 -0.7 1,494,694 + EX28DRAFT_1479 0.88 +0.2 1,494,815 + -0.0 1,495,060 + EX28DRAFT_1480 0.33 +0.6 1,495,106 + EX28DRAFT_1480 0.41 +0.3 1,495,123 - EX28DRAFT_1480 0.44 -0.3 1,495,198 + EX28DRAFT_1480 0.56 -0.5 1,495,248 + EX28DRAFT_1480 0.64 -0.3 1,495,345 - EX28DRAFT_1480 0.80 -0.3 1,495,356 + EX28DRAFT_1480 0.82 -1.7 1,495,448 + -0.1 1,495,449 - +0.3 1,495,452 + -0.3 1,495,455 + -0.3 1,495,461 + +1.5 1,495,467 + +1.3 1,495,622 - EX28DRAFT_1481 0.22 -0.2 1,495,622 - EX28DRAFT_1481 0.22 -0.2 1,495,698 - EX28DRAFT_1481 0.34 +0.1 1,495,701 + EX28DRAFT_1481 0.35 -0.5 1,495,727 - EX28DRAFT_1481 0.39 +0.4
Or see this region's nucleotide sequence