Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1189

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1187 and EX28DRAFT_1188 are separated by 12 nucleotidesEX28DRAFT_1188 and EX28DRAFT_1189 are separated by 117 nucleotidesEX28DRAFT_1189 and EX28DRAFT_1190 overlap by 13 nucleotides EX28DRAFT_1187: EX28DRAFT_1187 - Acetyltransferase (GNAT) family, at 1,207,697 to 1,208,137 _1187 EX28DRAFT_1188: EX28DRAFT_1188 - Sortase and related acyltransferases, at 1,208,150 to 1,208,620 _1188 EX28DRAFT_1189: EX28DRAFT_1189 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 1,208,738 to 1,209,286 _1189 EX28DRAFT_1190: EX28DRAFT_1190 - Predicted membrane protein, at 1,209,274 to 1,210,188 _1190 Position (kb) 1208 1209 1210Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1207.740 kb on + strandat 1207.741 kb on - strand, within EX28DRAFT_1187at 1207.749 kb on + strand, within EX28DRAFT_1187at 1207.756 kb on + strand, within EX28DRAFT_1187at 1207.791 kb on - strand, within EX28DRAFT_1187at 1207.791 kb on - strand, within EX28DRAFT_1187at 1207.838 kb on - strand, within EX28DRAFT_1187at 1208.049 kb on + strand, within EX28DRAFT_1187at 1208.049 kb on + strand, within EX28DRAFT_1187at 1208.050 kb on - strand, within EX28DRAFT_1187at 1208.069 kb on - strand, within EX28DRAFT_1187at 1208.071 kb on - strand, within EX28DRAFT_1187at 1208.101 kb on - strandat 1208.101 kb on - strandat 1208.115 kb on - strandat 1208.151 kb on + strandat 1208.151 kb on + strandat 1208.152 kb on - strandat 1208.180 kb on + strandat 1208.180 kb on + strandat 1208.211 kb on + strand, within EX28DRAFT_1188at 1208.212 kb on - strand, within EX28DRAFT_1188at 1208.375 kb on + strand, within EX28DRAFT_1188at 1208.428 kb on + strand, within EX28DRAFT_1188at 1208.429 kb on - strand, within EX28DRAFT_1188at 1208.452 kb on - strand, within EX28DRAFT_1188at 1208.460 kb on + strand, within EX28DRAFT_1188at 1208.533 kb on - strand, within EX28DRAFT_1188at 1208.533 kb on - strand, within EX28DRAFT_1188at 1208.582 kb on + strandat 1208.582 kb on + strandat 1208.612 kb on + strandat 1208.613 kb on - strandat 1208.615 kb on + strandat 1208.639 kb on + strandat 1208.639 kb on + strandat 1208.639 kb on + strandat 1208.642 kb on + strandat 1208.642 kb on + strandat 1208.643 kb on - strandat 1208.643 kb on - strandat 1208.645 kb on + strandat 1208.646 kb on - strandat 1208.669 kb on - strandat 1208.712 kb on + strandat 1208.713 kb on - strandat 1208.844 kb on - strand, within EX28DRAFT_1189at 1208.845 kb on + strand, within EX28DRAFT_1189at 1208.845 kb on + strand, within EX28DRAFT_1189at 1208.895 kb on - strand, within EX28DRAFT_1189at 1208.920 kb on + strand, within EX28DRAFT_1189at 1208.989 kb on + strand, within EX28DRAFT_1189at 1208.989 kb on + strand, within EX28DRAFT_1189at 1208.989 kb on + strand, within EX28DRAFT_1189at 1208.990 kb on - strand, within EX28DRAFT_1189at 1208.990 kb on - strand, within EX28DRAFT_1189at 1208.999 kb on + strand, within EX28DRAFT_1189at 1208.999 kb on + strand, within EX28DRAFT_1189at 1208.999 kb on + strand, within EX28DRAFT_1189at 1209.000 kb on - strand, within EX28DRAFT_1189at 1209.059 kb on + strand, within EX28DRAFT_1189at 1209.059 kb on + strand, within EX28DRAFT_1189at 1209.059 kb on + strand, within EX28DRAFT_1189at 1209.060 kb on - strand, within EX28DRAFT_1189at 1209.124 kb on - strand, within EX28DRAFT_1189at 1209.176 kb on - strand, within EX28DRAFT_1189at 1209.212 kb on + strand, within EX28DRAFT_1189at 1209.213 kb on - strand, within EX28DRAFT_1189at 1209.288 kb on - strandat 1209.390 kb on + strand, within EX28DRAFT_1190at 1209.444 kb on + strand, within EX28DRAFT_1190at 1209.445 kb on - strand, within EX28DRAFT_1190at 1209.452 kb on + strand, within EX28DRAFT_1190at 1209.452 kb on + strand, within EX28DRAFT_1190at 1209.453 kb on - strand, within EX28DRAFT_1190at 1209.453 kb on - strand, within EX28DRAFT_1190at 1209.485 kb on + strand, within EX28DRAFT_1190at 1209.485 kb on + strand, within EX28DRAFT_1190at 1209.486 kb on - strand, within EX28DRAFT_1190at 1209.534 kb on - strand, within EX28DRAFT_1190at 1209.534 kb on - strand, within EX28DRAFT_1190at 1209.558 kb on + strand, within EX28DRAFT_1190at 1209.558 kb on + strand, within EX28DRAFT_1190at 1209.559 kb on - strand, within EX28DRAFT_1190at 1209.560 kb on + strand, within EX28DRAFT_1190at 1209.560 kb on + strand, within EX28DRAFT_1190at 1209.618 kb on + strand, within EX28DRAFT_1190at 1209.619 kb on - strand, within EX28DRAFT_1190at 1209.619 kb on - strand, within EX28DRAFT_1190at 1209.619 kb on - strand, within EX28DRAFT_1190at 1209.619 kb on - strand, within EX28DRAFT_1190at 1209.710 kb on - strand, within EX28DRAFT_1190at 1209.751 kb on + strand, within EX28DRAFT_1190at 1209.751 kb on + strand, within EX28DRAFT_1190at 1209.751 kb on + strand, within EX28DRAFT_1190at 1209.771 kb on - strand, within EX28DRAFT_1190at 1209.953 kb on + strand, within EX28DRAFT_1190at 1209.962 kb on + strand, within EX28DRAFT_1190at 1210.033 kb on - strand, within EX28DRAFT_1190at 1210.053 kb on + strand, within EX28DRAFT_1190at 1210.053 kb on + strand, within EX28DRAFT_1190at 1210.054 kb on - strand, within EX28DRAFT_1190at 1210.159 kb on + strandat 1210.173 kb on + strandat 1210.273 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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1,207,740 + +0.2
1,207,741 - EX28DRAFT_1187 0.10 +0.7
1,207,749 + EX28DRAFT_1187 0.12 -0.9
1,207,756 + EX28DRAFT_1187 0.13 +0.1
1,207,791 - EX28DRAFT_1187 0.21 -0.8
1,207,791 - EX28DRAFT_1187 0.21 -0.0
1,207,838 - EX28DRAFT_1187 0.32 -0.7
1,208,049 + EX28DRAFT_1187 0.80 +0.4
1,208,049 + EX28DRAFT_1187 0.80 +0.5
1,208,050 - EX28DRAFT_1187 0.80 -1.0
1,208,069 - EX28DRAFT_1187 0.84 +0.7
1,208,071 - EX28DRAFT_1187 0.85 +0.3
1,208,101 - +0.3
1,208,101 - +0.0
1,208,115 - -0.8
1,208,151 + -0.0
1,208,151 + +0.7
1,208,152 - +0.8
1,208,180 + -0.1
1,208,180 + +0.4
1,208,211 + EX28DRAFT_1188 0.13 +0.5
1,208,212 - EX28DRAFT_1188 0.13 -2.8
1,208,375 + EX28DRAFT_1188 0.48 +0.3
1,208,428 + EX28DRAFT_1188 0.59 -1.1
1,208,429 - EX28DRAFT_1188 0.59 -0.1
1,208,452 - EX28DRAFT_1188 0.64 +0.8
1,208,460 + EX28DRAFT_1188 0.66 -0.1
1,208,533 - EX28DRAFT_1188 0.81 -0.3
1,208,533 - EX28DRAFT_1188 0.81 +0.0
1,208,582 + +0.2
1,208,582 + -2.2
1,208,612 + +0.8
1,208,613 - -0.1
1,208,615 + -0.2
1,208,639 + +2.1
1,208,639 + -0.7
1,208,639 + -1.1
1,208,642 + -1.6
1,208,642 + +0.8
1,208,643 - -0.3
1,208,643 - -1.1
1,208,645 + +0.6
1,208,646 - -0.8
1,208,669 - -0.6
1,208,712 + -0.5
1,208,713 - -0.2
1,208,844 - EX28DRAFT_1189 0.19 -0.6
1,208,845 + EX28DRAFT_1189 0.19 -2.3
1,208,845 + EX28DRAFT_1189 0.19 -0.3
1,208,895 - EX28DRAFT_1189 0.29 -0.0
1,208,920 + EX28DRAFT_1189 0.33 -0.4
1,208,989 + EX28DRAFT_1189 0.46 -0.4
1,208,989 + EX28DRAFT_1189 0.46 -0.5
1,208,989 + EX28DRAFT_1189 0.46 +0.3
1,208,990 - EX28DRAFT_1189 0.46 -1.3
1,208,990 - EX28DRAFT_1189 0.46 -2.2
1,208,999 + EX28DRAFT_1189 0.48 +0.4
1,208,999 + EX28DRAFT_1189 0.48 -1.0
1,208,999 + EX28DRAFT_1189 0.48 +1.1
1,209,000 - EX28DRAFT_1189 0.48 +0.7
1,209,059 + EX28DRAFT_1189 0.58 +2.4
1,209,059 + EX28DRAFT_1189 0.58 -0.3
1,209,059 + EX28DRAFT_1189 0.58 +0.2
1,209,060 - EX28DRAFT_1189 0.59 +0.0
1,209,124 - EX28DRAFT_1189 0.70 +1.7
1,209,176 - EX28DRAFT_1189 0.80 +0.2
1,209,212 + EX28DRAFT_1189 0.86 +1.8
1,209,213 - EX28DRAFT_1189 0.87 -2.3
1,209,288 - -0.7
1,209,390 + EX28DRAFT_1190 0.13 +0.1
1,209,444 + EX28DRAFT_1190 0.19 -1.2
1,209,445 - EX28DRAFT_1190 0.19 +0.7
1,209,452 + EX28DRAFT_1190 0.19 +0.3
1,209,452 + EX28DRAFT_1190 0.19 +0.2
1,209,453 - EX28DRAFT_1190 0.20 +0.8
1,209,453 - EX28DRAFT_1190 0.20 -0.7
1,209,485 + EX28DRAFT_1190 0.23 -0.6
1,209,485 + EX28DRAFT_1190 0.23 -0.7
1,209,486 - EX28DRAFT_1190 0.23 +0.0
1,209,534 - EX28DRAFT_1190 0.28 -0.3
1,209,534 - EX28DRAFT_1190 0.28 +0.7
1,209,558 + EX28DRAFT_1190 0.31 -0.5
1,209,558 + EX28DRAFT_1190 0.31 -0.7
1,209,559 - EX28DRAFT_1190 0.31 -0.3
1,209,560 + EX28DRAFT_1190 0.31 -1.3
1,209,560 + EX28DRAFT_1190 0.31 +1.1
1,209,618 + EX28DRAFT_1190 0.38 +1.5
1,209,619 - EX28DRAFT_1190 0.38 +0.6
1,209,619 - EX28DRAFT_1190 0.38 -0.3
1,209,619 - EX28DRAFT_1190 0.38 -0.0
1,209,619 - EX28DRAFT_1190 0.38 -0.5
1,209,710 - EX28DRAFT_1190 0.48 -0.6
1,209,751 + EX28DRAFT_1190 0.52 +0.5
1,209,751 + EX28DRAFT_1190 0.52 -0.3
1,209,751 + EX28DRAFT_1190 0.52 +0.4
1,209,771 - EX28DRAFT_1190 0.54 +0.1
1,209,953 + EX28DRAFT_1190 0.74 -0.6
1,209,962 + EX28DRAFT_1190 0.75 -0.2
1,210,033 - EX28DRAFT_1190 0.83 +1.1
1,210,053 + EX28DRAFT_1190 0.85 +0.2
1,210,053 + EX28DRAFT_1190 0.85 +0.4
1,210,054 - EX28DRAFT_1190 0.85 +0.8
1,210,159 + -0.3
1,210,173 + -0.7
1,210,273 + -0.2

Or see this region's nucleotide sequence