Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0656

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0654 and EX28DRAFT_0655 are separated by 176 nucleotidesEX28DRAFT_0655 and EX28DRAFT_0656 overlap by 26 nucleotidesEX28DRAFT_0656 and EX28DRAFT_0657 are separated by 15 nucleotides EX28DRAFT_0654: EX28DRAFT_0654 - Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components, at 648,548 to 649,534 _0654 EX28DRAFT_0655: EX28DRAFT_0655 - trehalose-phosphatase, at 649,711 to 650,514 _0655 EX28DRAFT_0656: EX28DRAFT_0656 - alpha,alpha-trehalose-phosphate synthase [UDP-forming], at 650,489 to 651,913 _0656 EX28DRAFT_0657: EX28DRAFT_0657 - Universal stress protein UspA and related nucleotide-binding proteins, at 651,929 to 652,357 _0657 Position (kb) 650 651 652Strain fitness (log2 ratio) -3 -2 -1 0 1at 649.565 kb on - strandat 649.572 kb on + strandat 649.572 kb on + strandat 649.572 kb on + strandat 649.647 kb on - strandat 649.649 kb on - strandat 649.649 kb on - strandat 649.652 kb on + strandat 649.652 kb on + strandat 649.652 kb on + strandat 649.652 kb on + strandat 649.753 kb on + strandat 649.754 kb on - strandat 649.754 kb on - strandat 649.819 kb on - strand, within EX28DRAFT_0655at 649.992 kb on + strand, within EX28DRAFT_0655at 650.213 kb on + strand, within EX28DRAFT_0655at 650.214 kb on - strand, within EX28DRAFT_0655at 650.232 kb on + strand, within EX28DRAFT_0655at 650.430 kb on - strand, within EX28DRAFT_0655at 650.462 kb on + strandat 650.463 kb on - strandat 650.499 kb on + strandat 650.574 kb on + strandat 650.574 kb on + strandat 650.575 kb on - strandat 650.575 kb on - strandat 650.575 kb on - strandat 650.575 kb on - strandat 650.575 kb on - strandat 650.671 kb on + strand, within EX28DRAFT_0656at 650.671 kb on + strand, within EX28DRAFT_0656at 650.705 kb on + strand, within EX28DRAFT_0656at 650.714 kb on + strand, within EX28DRAFT_0656at 650.717 kb on + strand, within EX28DRAFT_0656at 650.718 kb on - strand, within EX28DRAFT_0656at 650.760 kb on - strand, within EX28DRAFT_0656at 651.088 kb on + strand, within EX28DRAFT_0656at 651.089 kb on - strand, within EX28DRAFT_0656at 651.233 kb on - strand, within EX28DRAFT_0656at 651.600 kb on - strand, within EX28DRAFT_0656at 651.760 kb on + strand, within EX28DRAFT_0656at 651.805 kb on + strandat 651.841 kb on - strandat 651.841 kb on - strandat 651.916 kb on + strandat 651.982 kb on + strand, within EX28DRAFT_0657at 652.044 kb on - strand, within EX28DRAFT_0657at 652.044 kb on - strand, within EX28DRAFT_0657at 652.069 kb on + strand, within EX28DRAFT_0657at 652.079 kb on - strand, within EX28DRAFT_0657at 652.116 kb on + strand, within EX28DRAFT_0657at 652.197 kb on - strand, within EX28DRAFT_0657at 652.220 kb on - strand, within EX28DRAFT_0657at 652.221 kb on + strand, within EX28DRAFT_0657at 652.221 kb on + strand, within EX28DRAFT_0657at 652.222 kb on - strand, within EX28DRAFT_0657at 652.222 kb on - strand, within EX28DRAFT_0657at 652.222 kb on - strand, within EX28DRAFT_0657at 652.442 kb on + strandat 652.474 kb on + strandat 652.641 kb on + strandat 652.643 kb on + strandat 652.691 kb on + strandat 652.692 kb on - strandat 652.775 kb on + strandat 652.909 kb on + strandat 652.909 kb on + strandat 652.909 kb on + strandat 652.909 kb on + strandat 652.909 kb on + strandat 652.909 kb on + strandat 652.910 kb on - strandat 652.910 kb on - strandat 652.910 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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649,565 - +0.6
649,572 + +0.9
649,572 + -0.5
649,572 + +0.4
649,647 - +0.2
649,649 - -0.0
649,649 - -0.1
649,652 + +0.4
649,652 + -0.8
649,652 + +0.6
649,652 + -0.3
649,753 + -0.3
649,754 - +0.5
649,754 - +1.6
649,819 - EX28DRAFT_0655 0.13 +0.0
649,992 + EX28DRAFT_0655 0.35 +0.4
650,213 + EX28DRAFT_0655 0.62 +0.1
650,214 - EX28DRAFT_0655 0.63 +1.2
650,232 + EX28DRAFT_0655 0.65 -0.7
650,430 - EX28DRAFT_0655 0.89 +1.4
650,462 + -0.6
650,463 - -0.4
650,499 + -0.2
650,574 + +0.1
650,574 + +1.7
650,575 - -0.3
650,575 - +0.2
650,575 - +0.2
650,575 - -0.3
650,575 - +0.9
650,671 + EX28DRAFT_0656 0.13 -0.5
650,671 + EX28DRAFT_0656 0.13 -0.7
650,705 + EX28DRAFT_0656 0.15 +0.7
650,714 + EX28DRAFT_0656 0.16 -0.2
650,717 + EX28DRAFT_0656 0.16 -0.2
650,718 - EX28DRAFT_0656 0.16 +0.3
650,760 - EX28DRAFT_0656 0.19 -0.4
651,088 + EX28DRAFT_0656 0.42 -0.2
651,089 - EX28DRAFT_0656 0.42 +0.8
651,233 - EX28DRAFT_0656 0.52 -0.5
651,600 - EX28DRAFT_0656 0.78 -1.4
651,760 + EX28DRAFT_0656 0.89 -0.1
651,805 + +0.3
651,841 - -1.3
651,841 - -0.6
651,916 + -0.8
651,982 + EX28DRAFT_0657 0.12 -0.2
652,044 - EX28DRAFT_0657 0.27 -0.9
652,044 - EX28DRAFT_0657 0.27 -0.9
652,069 + EX28DRAFT_0657 0.33 -0.4
652,079 - EX28DRAFT_0657 0.35 +0.6
652,116 + EX28DRAFT_0657 0.44 +0.4
652,197 - EX28DRAFT_0657 0.62 +0.6
652,220 - EX28DRAFT_0657 0.68 +0.2
652,221 + EX28DRAFT_0657 0.68 +0.9
652,221 + EX28DRAFT_0657 0.68 -1.4
652,222 - EX28DRAFT_0657 0.68 -0.6
652,222 - EX28DRAFT_0657 0.68 -3.4
652,222 - EX28DRAFT_0657 0.68 -0.3
652,442 + -1.0
652,474 + -0.8
652,641 + -1.3
652,643 + +0.6
652,691 + -0.6
652,692 - -0.1
652,775 + -1.0
652,909 + +0.0
652,909 + +1.0
652,909 + +0.2
652,909 + +0.2
652,909 + +0.2
652,909 + +0.2
652,910 - -0.2
652,910 - +0.3
652,910 - -0.1

Or see this region's nucleotide sequence