Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0365

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0363 and EX28DRAFT_0364 overlap by 1 nucleotidesEX28DRAFT_0364 and EX28DRAFT_0365 are separated by 69 nucleotidesEX28DRAFT_0365 and EX28DRAFT_0366 are separated by 148 nucleotides EX28DRAFT_0363: EX28DRAFT_0363 - O-6-methylguanine DNA methyltransferase, at 333,506 to 334,564 _0363 EX28DRAFT_0364: EX28DRAFT_0364 - Alkylated DNA repair protein, at 334,564 to 335,220 _0364 EX28DRAFT_0365: EX28DRAFT_0365 - cyclic peptide transporter, at 335,290 to 336,933 _0365 EX28DRAFT_0366: EX28DRAFT_0366 - Mg2+ transporter (mgtE), at 337,082 to 338,518 _0366 Position (kb) 335 336 337Strain fitness (log2 ratio) -2 -1 0 1 2 3at 334.790 kb on - strand, within EX28DRAFT_0364at 334.877 kb on + strand, within EX28DRAFT_0364at 334.889 kb on - strand, within EX28DRAFT_0364at 334.990 kb on - strand, within EX28DRAFT_0364at 335.179 kb on - strandat 335.218 kb on + strandat 335.297 kb on + strandat 335.298 kb on - strandat 335.342 kb on + strandat 335.343 kb on - strandat 335.569 kb on - strand, within EX28DRAFT_0365at 335.577 kb on - strand, within EX28DRAFT_0365at 335.643 kb on + strand, within EX28DRAFT_0365at 335.710 kb on + strand, within EX28DRAFT_0365at 335.785 kb on - strand, within EX28DRAFT_0365at 335.803 kb on + strand, within EX28DRAFT_0365at 335.803 kb on + strand, within EX28DRAFT_0365at 335.838 kb on + strand, within EX28DRAFT_0365at 335.838 kb on + strand, within EX28DRAFT_0365at 335.838 kb on + strand, within EX28DRAFT_0365at 335.838 kb on + strand, within EX28DRAFT_0365at 335.839 kb on - strand, within EX28DRAFT_0365at 335.846 kb on - strand, within EX28DRAFT_0365at 335.847 kb on + strand, within EX28DRAFT_0365at 335.864 kb on + strand, within EX28DRAFT_0365at 335.913 kb on + strand, within EX28DRAFT_0365at 335.913 kb on + strand, within EX28DRAFT_0365at 335.920 kb on - strand, within EX28DRAFT_0365at 335.929 kb on + strand, within EX28DRAFT_0365at 335.929 kb on + strand, within EX28DRAFT_0365at 335.929 kb on + strand, within EX28DRAFT_0365at 335.930 kb on - strand, within EX28DRAFT_0365at 335.931 kb on + strand, within EX28DRAFT_0365at 335.961 kb on + strand, within EX28DRAFT_0365at 335.961 kb on + strand, within EX28DRAFT_0365at 335.961 kb on + strand, within EX28DRAFT_0365at 335.962 kb on - strand, within EX28DRAFT_0365at 335.962 kb on - strand, within EX28DRAFT_0365at 335.962 kb on - strand, within EX28DRAFT_0365at 335.964 kb on + strand, within EX28DRAFT_0365at 336.012 kb on + strand, within EX28DRAFT_0365at 336.012 kb on + strand, within EX28DRAFT_0365at 336.038 kb on + strand, within EX28DRAFT_0365at 336.039 kb on - strand, within EX28DRAFT_0365at 336.177 kb on + strand, within EX28DRAFT_0365at 336.177 kb on + strand, within EX28DRAFT_0365at 336.178 kb on - strand, within EX28DRAFT_0365at 336.178 kb on - strand, within EX28DRAFT_0365at 336.210 kb on + strand, within EX28DRAFT_0365at 336.378 kb on + strand, within EX28DRAFT_0365at 336.406 kb on + strand, within EX28DRAFT_0365at 336.407 kb on - strand, within EX28DRAFT_0365at 336.824 kb on - strandat 336.824 kb on - strandat 336.830 kb on + strandat 336.830 kb on + strandat 336.830 kb on + strandat 336.831 kb on - strandat 336.831 kb on - strandat 336.971 kb on + strandat 336.971 kb on + strandat 336.972 kb on - strandat 336.972 kb on - strandat 336.972 kb on - strandat 337.026 kb on - strandat 337.026 kb on - strandat 337.026 kb on - strandat 337.029 kb on + strandat 337.029 kb on + strandat 337.029 kb on + strandat 337.029 kb on + strandat 337.029 kb on + strandat 337.030 kb on - strandat 337.030 kb on - strandat 337.030 kb on - strandat 337.030 kb on - strandat 337.030 kb on - strandat 337.030 kb on - strandat 337.030 kb on - strandat 337.033 kb on + strandat 337.050 kb on + strandat 337.075 kb on - strandat 337.075 kb on - strandat 337.090 kb on - strandat 337.175 kb on - strandat 337.245 kb on + strand, within EX28DRAFT_0366at 337.246 kb on - strand, within EX28DRAFT_0366at 337.266 kb on + strand, within EX28DRAFT_0366at 337.930 kb on - strand, within EX28DRAFT_0366at 337.930 kb on - strand, within EX28DRAFT_0366at 337.932 kb on - strand, within EX28DRAFT_0366

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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334,790 - EX28DRAFT_0364 0.34 -0.8
334,877 + EX28DRAFT_0364 0.48 +0.1
334,889 - EX28DRAFT_0364 0.49 +2.8
334,990 - EX28DRAFT_0364 0.65 -0.2
335,179 - -0.1
335,218 + +1.2
335,297 + +0.2
335,298 - +0.1
335,342 + -0.1
335,343 - +1.8
335,569 - EX28DRAFT_0365 0.17 -1.4
335,577 - EX28DRAFT_0365 0.17 +0.8
335,643 + EX28DRAFT_0365 0.21 +0.4
335,710 + EX28DRAFT_0365 0.26 +0.8
335,785 - EX28DRAFT_0365 0.30 -0.6
335,803 + EX28DRAFT_0365 0.31 -0.4
335,803 + EX28DRAFT_0365 0.31 +0.1
335,838 + EX28DRAFT_0365 0.33 +0.2
335,838 + EX28DRAFT_0365 0.33 +0.5
335,838 + EX28DRAFT_0365 0.33 -0.8
335,838 + EX28DRAFT_0365 0.33 +0.2
335,839 - EX28DRAFT_0365 0.33 +2.2
335,846 - EX28DRAFT_0365 0.34 -0.7
335,847 + EX28DRAFT_0365 0.34 -0.0
335,864 + EX28DRAFT_0365 0.35 +0.8
335,913 + EX28DRAFT_0365 0.38 -0.3
335,913 + EX28DRAFT_0365 0.38 -0.7
335,920 - EX28DRAFT_0365 0.38 -0.3
335,929 + EX28DRAFT_0365 0.39 -0.1
335,929 + EX28DRAFT_0365 0.39 +0.2
335,929 + EX28DRAFT_0365 0.39 +0.3
335,930 - EX28DRAFT_0365 0.39 +0.2
335,931 + EX28DRAFT_0365 0.39 -0.2
335,961 + EX28DRAFT_0365 0.41 +0.4
335,961 + EX28DRAFT_0365 0.41 +0.7
335,961 + EX28DRAFT_0365 0.41 +0.1
335,962 - EX28DRAFT_0365 0.41 +0.3
335,962 - EX28DRAFT_0365 0.41 +0.5
335,962 - EX28DRAFT_0365 0.41 +0.7
335,964 + EX28DRAFT_0365 0.41 +0.2
336,012 + EX28DRAFT_0365 0.44 +0.3
336,012 + EX28DRAFT_0365 0.44 +0.4
336,038 + EX28DRAFT_0365 0.45 -0.3
336,039 - EX28DRAFT_0365 0.46 -1.4
336,177 + EX28DRAFT_0365 0.54 -0.4
336,177 + EX28DRAFT_0365 0.54 -0.4
336,178 - EX28DRAFT_0365 0.54 -0.9
336,178 - EX28DRAFT_0365 0.54 +0.2
336,210 + EX28DRAFT_0365 0.56 -0.4
336,378 + EX28DRAFT_0365 0.66 -0.4
336,406 + EX28DRAFT_0365 0.68 +1.3
336,407 - EX28DRAFT_0365 0.68 +0.5
336,824 - +0.6
336,824 - -0.5
336,830 + +0.7
336,830 + +0.1
336,830 + -0.5
336,831 - -0.4
336,831 - -0.8
336,971 + +2.0
336,971 + +0.1
336,972 - +0.4
336,972 - -0.3
336,972 - -0.1
337,026 - -0.1
337,026 - +0.1
337,026 - -0.7
337,029 + +0.1
337,029 + +0.3
337,029 + -0.2
337,029 + -0.9
337,029 + -0.7
337,030 - +0.3
337,030 - +0.1
337,030 - -0.4
337,030 - -0.1
337,030 - +0.7
337,030 - +0.4
337,030 - -0.1
337,033 + +1.2
337,050 + +0.4
337,075 - +0.5
337,075 - +0.4
337,090 - +0.2
337,175 - +0.2
337,245 + EX28DRAFT_0366 0.11 -0.1
337,246 - EX28DRAFT_0366 0.11 -1.8
337,266 + EX28DRAFT_0366 0.13 +1.2
337,930 - EX28DRAFT_0366 0.59 -0.1
337,930 - EX28DRAFT_0366 0.59 -0.4
337,932 - EX28DRAFT_0366 0.59 +0.0

Or see this region's nucleotide sequence