Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0175 and EX28DRAFT_0176 are separated by 146 nucleotides EX28DRAFT_0176 and EX28DRAFT_0177 overlap by 4 nucleotides EX28DRAFT_0177 and EX28DRAFT_0178 are separated by 18 nucleotides
EX28DRAFT_0175: EX28DRAFT_0175 - phosphotransferase system, cellobiose specific, IIC component, at 124,874 to 126,193
_0175
EX28DRAFT_0176: EX28DRAFT_0176 - Homeodomain-like domain, at 126,340 to 127,164
_0176
EX28DRAFT_0177: EX28DRAFT_0177 - arsenate reductase (glutaredoxin), at 127,161 to 127,517
_0177
EX28DRAFT_0178: EX28DRAFT_0178 - Putative Zn-dependent protease, contains TPR repeats, at 127,536 to 128,999
_0178
Position (kb) 126
127
128 Strain fitness (log2 ratio) -2
-1
0
1
2 at 125.356 kb on + strand, within EX28DRAFT_0175 at 125.515 kb on - strand, within EX28DRAFT_0175 at 125.557 kb on - strand, within EX28DRAFT_0175 at 125.557 kb on - strand, within EX28DRAFT_0175 at 125.580 kb on + strand, within EX28DRAFT_0175 at 125.580 kb on + strand, within EX28DRAFT_0175 at 125.581 kb on - strand, within EX28DRAFT_0175 at 126.016 kb on + strand, within EX28DRAFT_0175 at 126.016 kb on + strand, within EX28DRAFT_0175 at 126.028 kb on - strand, within EX28DRAFT_0175 at 126.099 kb on + strand at 126.232 kb on + strand at 126.499 kb on - strand, within EX28DRAFT_0176 at 126.499 kb on - strand, within EX28DRAFT_0176 at 126.743 kb on + strand, within EX28DRAFT_0176 at 126.743 kb on + strand, within EX28DRAFT_0176 at 126.744 kb on - strand, within EX28DRAFT_0176 at 126.768 kb on + strand, within EX28DRAFT_0176 at 126.769 kb on - strand, within EX28DRAFT_0176 at 126.769 kb on - strand, within EX28DRAFT_0176 at 127.162 kb on + strand at 127.162 kb on + strand at 127.314 kb on - strand, within EX28DRAFT_0177 at 127.315 kb on + strand, within EX28DRAFT_0177 at 127.316 kb on - strand, within EX28DRAFT_0177 at 127.415 kb on - strand, within EX28DRAFT_0177 at 127.534 kb on + strand at 127.537 kb on + strand at 127.537 kb on + strand at 127.538 kb on - strand at 127.538 kb on - strand at 127.538 kb on - strand at 127.781 kb on + strand, within EX28DRAFT_0178 at 127.839 kb on + strand, within EX28DRAFT_0178 at 127.839 kb on + strand, within EX28DRAFT_0178 at 127.844 kb on - strand, within EX28DRAFT_0178 at 127.859 kb on + strand, within EX28DRAFT_0178 at 127.966 kb on + strand, within EX28DRAFT_0178 at 127.967 kb on - strand, within EX28DRAFT_0178 at 128.027 kb on - strand, within EX28DRAFT_0178 at 128.146 kb on + strand, within EX28DRAFT_0178 at 128.146 kb on + strand, within EX28DRAFT_0178 at 128.147 kb on - strand, within EX28DRAFT_0178 at 128.147 kb on - strand, within EX28DRAFT_0178
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 125,356 + EX28DRAFT_0175 0.37 -0.0 125,515 - EX28DRAFT_0175 0.49 -0.1 125,557 - EX28DRAFT_0175 0.52 +0.5 125,557 - EX28DRAFT_0175 0.52 -0.4 125,580 + EX28DRAFT_0175 0.53 -1.1 125,580 + EX28DRAFT_0175 0.53 -0.1 125,581 - EX28DRAFT_0175 0.54 +0.8 126,016 + EX28DRAFT_0175 0.87 -0.5 126,016 + EX28DRAFT_0175 0.87 +0.7 126,028 - EX28DRAFT_0175 0.87 -0.2 126,099 + +0.2 126,232 + -0.0 126,499 - EX28DRAFT_0176 0.19 +2.4 126,499 - EX28DRAFT_0176 0.19 +0.1 126,743 + EX28DRAFT_0176 0.49 -0.2 126,743 + EX28DRAFT_0176 0.49 -0.2 126,744 - EX28DRAFT_0176 0.49 +0.4 126,768 + EX28DRAFT_0176 0.52 +0.6 126,769 - EX28DRAFT_0176 0.52 +0.1 126,769 - EX28DRAFT_0176 0.52 -1.3 127,162 + -0.1 127,162 + +2.5 127,314 - EX28DRAFT_0177 0.43 -1.0 127,315 + EX28DRAFT_0177 0.43 +0.7 127,316 - EX28DRAFT_0177 0.43 -0.1 127,415 - EX28DRAFT_0177 0.71 +0.9 127,534 + +0.3 127,537 + +0.1 127,537 + -2.5 127,538 - -0.5 127,538 - +0.5 127,538 - -0.6 127,781 + EX28DRAFT_0178 0.17 +0.1 127,839 + EX28DRAFT_0178 0.21 -0.0 127,839 + EX28DRAFT_0178 0.21 +1.6 127,844 - EX28DRAFT_0178 0.21 +0.6 127,859 + EX28DRAFT_0178 0.22 +0.2 127,966 + EX28DRAFT_0178 0.29 +0.1 127,967 - EX28DRAFT_0178 0.29 -0.1 128,027 - EX28DRAFT_0178 0.34 -0.1 128,146 + EX28DRAFT_0178 0.42 +0.2 128,146 + EX28DRAFT_0178 0.42 +0.5 128,147 - EX28DRAFT_0178 0.42 +0.2 128,147 - EX28DRAFT_0178 0.42 -0.5
Or see this region's nucleotide sequence