Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0127

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0126 and EX28DRAFT_0127 are separated by 293 nucleotidesEX28DRAFT_0127 and EX28DRAFT_0128 are separated by 26 nucleotides EX28DRAFT_0126: EX28DRAFT_0126 - 23S rRNA (adenine(2503)-C(2))-methyltransferase, at 69,610 to 70,776 _0126 EX28DRAFT_0127: EX28DRAFT_0127 - Uncharacterized protein conserved in bacteria, at 71,070 to 72,083 _0127 EX28DRAFT_0128: EX28DRAFT_0128 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC 1.17.4.3), at 72,110 to 73,228 _0128 Position (kb) 71 72 73Strain fitness (log2 ratio) -2 -1 0 1at 70.113 kb on - strand, within EX28DRAFT_0126at 70.254 kb on + strand, within EX28DRAFT_0126at 70.255 kb on - strand, within EX28DRAFT_0126at 70.255 kb on - strand, within EX28DRAFT_0126at 70.533 kb on + strand, within EX28DRAFT_0126at 70.534 kb on - strand, within EX28DRAFT_0126at 70.584 kb on + strand, within EX28DRAFT_0126at 70.653 kb on + strand, within EX28DRAFT_0126at 70.725 kb on + strandat 70.740 kb on + strandat 70.740 kb on + strandat 70.741 kb on - strandat 70.779 kb on - strandat 70.800 kb on - strandat 70.800 kb on - strandat 70.818 kb on - strandat 70.864 kb on + strandat 70.865 kb on - strandat 70.894 kb on + strandat 70.898 kb on + strandat 70.898 kb on + strandat 70.918 kb on - strandat 70.963 kb on + strandat 70.963 kb on + strandat 70.963 kb on + strandat 70.963 kb on + strandat 70.964 kb on - strandat 70.964 kb on - strandat 70.964 kb on - strandat 71.052 kb on + strandat 71.498 kb on + strand, within EX28DRAFT_0127at 71.498 kb on + strand, within EX28DRAFT_0127at 71.501 kb on + strand, within EX28DRAFT_0127at 71.501 kb on + strand, within EX28DRAFT_0127at 71.504 kb on + strand, within EX28DRAFT_0127at 71.720 kb on + strand, within EX28DRAFT_0127at 71.730 kb on - strand, within EX28DRAFT_0127at 71.805 kb on - strand, within EX28DRAFT_0127at 71.885 kb on + strand, within EX28DRAFT_0127at 71.950 kb on - strand, within EX28DRAFT_0127at 72.032 kb on + strandat 72.032 kb on + strandat 72.081 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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70,113 - EX28DRAFT_0126 0.43 +0.4
70,254 + EX28DRAFT_0126 0.55 +0.6
70,255 - EX28DRAFT_0126 0.55 -1.6
70,255 - EX28DRAFT_0126 0.55 +0.4
70,533 + EX28DRAFT_0126 0.79 +0.8
70,534 - EX28DRAFT_0126 0.79 -0.6
70,584 + EX28DRAFT_0126 0.83 -0.1
70,653 + EX28DRAFT_0126 0.89 +0.3
70,725 + -0.2
70,740 + +1.2
70,740 + +0.5
70,741 - +0.9
70,779 - -1.2
70,800 - -0.4
70,800 - -0.1
70,818 - +0.4
70,864 + +0.4
70,865 - +0.1
70,894 + -0.8
70,898 + +0.1
70,898 + +0.4
70,918 - -0.2
70,963 + -0.3
70,963 + +0.3
70,963 + -0.5
70,963 + +0.7
70,964 - -0.5
70,964 - +0.0
70,964 - -0.6
71,052 + -0.1
71,498 + EX28DRAFT_0127 0.42 +0.2
71,498 + EX28DRAFT_0127 0.42 +0.2
71,501 + EX28DRAFT_0127 0.43 +0.4
71,501 + EX28DRAFT_0127 0.43 -0.5
71,504 + EX28DRAFT_0127 0.43 +0.1
71,720 + EX28DRAFT_0127 0.64 -0.4
71,730 - EX28DRAFT_0127 0.65 -1.4
71,805 - EX28DRAFT_0127 0.72 -2.3
71,885 + EX28DRAFT_0127 0.80 +0.3
71,950 - EX28DRAFT_0127 0.87 +0.7
72,032 + -0.5
72,032 + -0.2
72,081 + +0.2

Or see this region's nucleotide sequence