Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18865

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18860 and CA264_18865 are separated by 96 nucleotidesCA264_18865 and CA264_18870 are separated by 109 nucleotidesCA264_18870 and CA264_18875 are separated by 127 nucleotides CA264_18860: CA264_18860 - TIGR00374 family protein, at 4,377,499 to 4,378,560 _18860 CA264_18865: CA264_18865 - monooxygenase, at 4,378,657 to 4,379,799 _18865 CA264_18870: CA264_18870 - hypothetical protein, at 4,379,909 to 4,380,424 _18870 CA264_18875: CA264_18875 - N-acetyltransferase, at 4,380,552 to 4,381,082 _18875 Position (kb) 4378 4379 4380Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4377.694 kb on + strand, within CA264_18860at 4377.694 kb on + strand, within CA264_18860at 4377.694 kb on + strand, within CA264_18860at 4377.695 kb on - strandat 4377.696 kb on + strand, within CA264_18860at 4377.696 kb on + strand, within CA264_18860at 4377.697 kb on - strand, within CA264_18860at 4377.868 kb on + strand, within CA264_18860at 4377.869 kb on - strand, within CA264_18860at 4377.869 kb on - strand, within CA264_18860at 4377.869 kb on - strand, within CA264_18860at 4377.906 kb on + strand, within CA264_18860at 4377.906 kb on + strand, within CA264_18860at 4378.007 kb on - strand, within CA264_18860at 4378.011 kb on + strand, within CA264_18860at 4378.012 kb on - strand, within CA264_18860at 4378.012 kb on - strand, within CA264_18860at 4378.016 kb on - strand, within CA264_18860at 4378.016 kb on - strand, within CA264_18860at 4378.016 kb on - strand, within CA264_18860at 4378.026 kb on + strand, within CA264_18860at 4378.026 kb on + strand, within CA264_18860at 4378.027 kb on - strand, within CA264_18860at 4378.027 kb on - strand, within CA264_18860at 4378.027 kb on - strand, within CA264_18860at 4378.033 kb on + strand, within CA264_18860at 4378.035 kb on + strand, within CA264_18860at 4378.035 kb on + strand, within CA264_18860at 4378.035 kb on + strand, within CA264_18860at 4378.036 kb on - strand, within CA264_18860at 4378.051 kb on + strand, within CA264_18860at 4378.052 kb on - strand, within CA264_18860at 4378.052 kb on - strand, within CA264_18860at 4378.052 kb on - strand, within CA264_18860at 4378.052 kb on - strand, within CA264_18860at 4378.052 kb on - strand, within CA264_18860at 4378.052 kb on - strand, within CA264_18860at 4378.052 kb on - strand, within CA264_18860at 4378.197 kb on + strand, within CA264_18860at 4378.198 kb on - strand, within CA264_18860at 4378.198 kb on - strand, within CA264_18860at 4378.202 kb on - strand, within CA264_18860at 4378.249 kb on + strand, within CA264_18860at 4378.465 kb on + strandat 4378.468 kb on + strandat 4378.521 kb on - strandat 4378.559 kb on - strandat 4378.654 kb on + strandat 4378.655 kb on - strandat 4378.671 kb on - strandat 4378.673 kb on + strandat 4378.721 kb on + strandat 4378.740 kb on - strandat 4378.741 kb on + strandat 4378.741 kb on + strandat 4378.800 kb on + strand, within CA264_18865at 4378.800 kb on + strand, within CA264_18865at 4378.801 kb on - strand, within CA264_18865at 4378.801 kb on - strand, within CA264_18865at 4378.874 kb on + strand, within CA264_18865at 4378.934 kb on - strand, within CA264_18865at 4378.934 kb on - strand, within CA264_18865at 4378.979 kb on + strand, within CA264_18865at 4379.016 kb on - strand, within CA264_18865at 4379.016 kb on - strand, within CA264_18865at 4379.026 kb on - strand, within CA264_18865at 4379.122 kb on - strand, within CA264_18865at 4379.133 kb on - strand, within CA264_18865at 4379.213 kb on + strand, within CA264_18865at 4379.214 kb on - strand, within CA264_18865at 4379.214 kb on - strand, within CA264_18865at 4379.219 kb on + strand, within CA264_18865at 4379.220 kb on - strand, within CA264_18865at 4379.456 kb on + strand, within CA264_18865at 4379.456 kb on + strand, within CA264_18865at 4379.526 kb on + strand, within CA264_18865at 4379.527 kb on - strand, within CA264_18865at 4379.623 kb on + strand, within CA264_18865at 4379.623 kb on + strand, within CA264_18865at 4379.809 kb on - strandat 4379.809 kb on - strandat 4379.819 kb on + strandat 4379.819 kb on + strandat 4379.838 kb on - strandat 4379.854 kb on + strandat 4379.860 kb on + strandat 4379.873 kb on + strandat 4379.893 kb on + strandat 4379.920 kb on + strandat 4379.921 kb on - strandat 4379.922 kb on + strandat 4379.944 kb on - strandat 4380.042 kb on + strand, within CA264_18870at 4380.087 kb on - strand, within CA264_18870at 4380.209 kb on + strand, within CA264_18870at 4380.209 kb on + strand, within CA264_18870at 4380.209 kb on + strand, within CA264_18870at 4380.209 kb on + strand, within CA264_18870at 4380.210 kb on - strand, within CA264_18870at 4380.210 kb on - strand, within CA264_18870at 4380.210 kb on - strand, within CA264_18870at 4380.219 kb on - strand, within CA264_18870at 4380.219 kb on - strand, within CA264_18870at 4380.248 kb on + strand, within CA264_18870at 4380.265 kb on + strand, within CA264_18870at 4380.265 kb on + strand, within CA264_18870at 4380.276 kb on - strand, within CA264_18870at 4380.293 kb on - strand, within CA264_18870at 4380.307 kb on + strand, within CA264_18870at 4380.386 kb on + strandat 4380.388 kb on + strandat 4380.388 kb on + strandat 4380.423 kb on - strandat 4380.469 kb on + strandat 4380.525 kb on + strandat 4380.526 kb on - strandat 4380.575 kb on + strandat 4380.575 kb on + strandat 4380.576 kb on - strandat 4380.642 kb on + strandat 4380.686 kb on + strand, within CA264_18875at 4380.694 kb on - strand, within CA264_18875at 4380.735 kb on + strand, within CA264_18875at 4380.736 kb on - strand, within CA264_18875at 4380.772 kb on - strand, within CA264_18875

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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4,377,694 + CA264_18860 0.18 +1.3
4,377,694 + CA264_18860 0.18 -0.4
4,377,694 + CA264_18860 0.18 +0.2
4,377,695 - +2.3
4,377,696 + CA264_18860 0.19 -0.9
4,377,696 + CA264_18860 0.19 +0.4
4,377,697 - CA264_18860 0.19 -1.3
4,377,868 + CA264_18860 0.35 +0.8
4,377,869 - CA264_18860 0.35 +0.0
4,377,869 - CA264_18860 0.35 +0.6
4,377,869 - CA264_18860 0.35 +2.7
4,377,906 + CA264_18860 0.38 +1.1
4,377,906 + CA264_18860 0.38 +1.3
4,378,007 - CA264_18860 0.48 +1.2
4,378,011 + CA264_18860 0.48 -0.2
4,378,012 - CA264_18860 0.48 +3.1
4,378,012 - CA264_18860 0.48 -1.2
4,378,016 - CA264_18860 0.49 -0.7
4,378,016 - CA264_18860 0.49 +1.5
4,378,016 - CA264_18860 0.49 +1.5
4,378,026 + CA264_18860 0.50 +0.9
4,378,026 + CA264_18860 0.50 +1.0
4,378,027 - CA264_18860 0.50 +1.0
4,378,027 - CA264_18860 0.50 +0.2
4,378,027 - CA264_18860 0.50 +0.4
4,378,033 + CA264_18860 0.50 -0.1
4,378,035 + CA264_18860 0.50 -0.0
4,378,035 + CA264_18860 0.50 +1.4
4,378,035 + CA264_18860 0.50 +1.5
4,378,036 - CA264_18860 0.51 +0.7
4,378,051 + CA264_18860 0.52 +1.0
4,378,052 - CA264_18860 0.52 +0.6
4,378,052 - CA264_18860 0.52 -0.1
4,378,052 - CA264_18860 0.52 +0.3
4,378,052 - CA264_18860 0.52 +1.2
4,378,052 - CA264_18860 0.52 -0.1
4,378,052 - CA264_18860 0.52 -0.9
4,378,052 - CA264_18860 0.52 +1.1
4,378,197 + CA264_18860 0.66 +0.2
4,378,198 - CA264_18860 0.66 +1.6
4,378,198 - CA264_18860 0.66 +0.6
4,378,202 - CA264_18860 0.66 +0.7
4,378,249 + CA264_18860 0.71 +0.0
4,378,465 + +1.3
4,378,468 + -0.1
4,378,521 - +0.6
4,378,559 - -0.0
4,378,654 + +0.4
4,378,655 - +0.8
4,378,671 - -0.3
4,378,673 + -0.7
4,378,721 + -0.7
4,378,740 - +0.3
4,378,741 + -2.4
4,378,741 + -0.4
4,378,800 + CA264_18865 0.13 -0.4
4,378,800 + CA264_18865 0.13 -0.1
4,378,801 - CA264_18865 0.13 -2.9
4,378,801 - CA264_18865 0.13 -0.7
4,378,874 + CA264_18865 0.19 -1.3
4,378,934 - CA264_18865 0.24 +0.2
4,378,934 - CA264_18865 0.24 +0.2
4,378,979 + CA264_18865 0.28 -0.6
4,379,016 - CA264_18865 0.31 +0.0
4,379,016 - CA264_18865 0.31 -0.4
4,379,026 - CA264_18865 0.32 +1.1
4,379,122 - CA264_18865 0.41 +1.7
4,379,133 - CA264_18865 0.42 +0.0
4,379,213 + CA264_18865 0.49 -0.9
4,379,214 - CA264_18865 0.49 -0.4
4,379,214 - CA264_18865 0.49 +1.0
4,379,219 + CA264_18865 0.49 +0.4
4,379,220 - CA264_18865 0.49 +0.7
4,379,456 + CA264_18865 0.70 +0.6
4,379,456 + CA264_18865 0.70 +0.4
4,379,526 + CA264_18865 0.76 +0.1
4,379,527 - CA264_18865 0.76 +1.7
4,379,623 + CA264_18865 0.85 -0.4
4,379,623 + CA264_18865 0.85 -0.8
4,379,809 - -0.0
4,379,809 - -1.4
4,379,819 + -0.9
4,379,819 + +1.1
4,379,838 - -0.0
4,379,854 + +1.1
4,379,860 + -0.8
4,379,873 + -1.6
4,379,893 + +0.5
4,379,920 + +0.4
4,379,921 - +0.2
4,379,922 + -0.2
4,379,944 - -0.2
4,380,042 + CA264_18870 0.26 -1.8
4,380,087 - CA264_18870 0.34 -0.1
4,380,209 + CA264_18870 0.58 +0.4
4,380,209 + CA264_18870 0.58 -0.9
4,380,209 + CA264_18870 0.58 -0.4
4,380,209 + CA264_18870 0.58 -0.7
4,380,210 - CA264_18870 0.58 +0.5
4,380,210 - CA264_18870 0.58 +0.7
4,380,210 - CA264_18870 0.58 +0.0
4,380,219 - CA264_18870 0.60 +0.1
4,380,219 - CA264_18870 0.60 +0.2
4,380,248 + CA264_18870 0.66 -0.1
4,380,265 + CA264_18870 0.69 -0.5
4,380,265 + CA264_18870 0.69 -0.2
4,380,276 - CA264_18870 0.71 +0.3
4,380,293 - CA264_18870 0.74 +0.3
4,380,307 + CA264_18870 0.77 +0.5
4,380,386 + +0.5
4,380,388 + +0.5
4,380,388 + +0.3
4,380,423 - +0.0
4,380,469 + +0.3
4,380,525 + -1.3
4,380,526 - +0.3
4,380,575 + +0.2
4,380,575 + +1.1
4,380,576 - -1.6
4,380,642 + +1.1
4,380,686 + CA264_18875 0.25 +0.7
4,380,694 - CA264_18875 0.27 +0.9
4,380,735 + CA264_18875 0.34 +0.0
4,380,736 - CA264_18875 0.35 -0.2
4,380,772 - CA264_18875 0.41 +0.0

Or see this region's nucleotide sequence