Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18295

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18290 and CA264_18295 are separated by 165 nucleotidesCA264_18295 and CA264_18300 are separated by 235 nucleotides CA264_18290: CA264_18290 - NADH dehydrogenase subunit D, at 4,252,796 to 4,254,007 _18290 CA264_18295: CA264_18295 - iron-sulfur cluster-binding protein, at 4,254,173 to 4,255,546 _18295 CA264_18300: CA264_18300 - peptidase M28, at 4,255,782 to 4,257,338 _18300 Position (kb) 4254 4255 4256Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4253.275 kb on + strand, within CA264_18290at 4253.277 kb on + strand, within CA264_18290at 4253.319 kb on - strand, within CA264_18290at 4253.325 kb on - strand, within CA264_18290at 4253.345 kb on + strand, within CA264_18290at 4253.349 kb on - strand, within CA264_18290at 4253.391 kb on + strand, within CA264_18290at 4253.396 kb on + strand, within CA264_18290at 4253.396 kb on + strand, within CA264_18290at 4253.448 kb on + strand, within CA264_18290at 4253.453 kb on - strand, within CA264_18290at 4253.505 kb on - strand, within CA264_18290at 4253.541 kb on + strand, within CA264_18290at 4253.542 kb on - strand, within CA264_18290at 4253.654 kb on + strand, within CA264_18290at 4253.655 kb on - strand, within CA264_18290at 4253.905 kb on - strandat 4253.942 kb on - strandat 4254.005 kb on + strandat 4254.005 kb on + strandat 4254.060 kb on + strandat 4254.061 kb on - strandat 4254.096 kb on + strandat 4254.096 kb on + strandat 4254.096 kb on + strandat 4254.113 kb on + strandat 4254.153 kb on + strandat 4254.299 kb on + strandat 4254.300 kb on - strandat 4254.300 kb on - strandat 4254.301 kb on + strandat 4254.301 kb on + strandat 4254.301 kb on + strandat 4254.302 kb on - strandat 4254.448 kb on + strand, within CA264_18295at 4254.507 kb on + strand, within CA264_18295at 4254.507 kb on + strand, within CA264_18295at 4254.544 kb on - strand, within CA264_18295at 4254.555 kb on + strand, within CA264_18295at 4254.556 kb on - strand, within CA264_18295at 4254.560 kb on - strand, within CA264_18295at 4254.580 kb on - strand, within CA264_18295at 4254.680 kb on + strand, within CA264_18295at 4254.681 kb on - strand, within CA264_18295at 4254.687 kb on + strand, within CA264_18295at 4254.756 kb on - strand, within CA264_18295at 4254.868 kb on + strand, within CA264_18295at 4254.869 kb on - strand, within CA264_18295at 4254.970 kb on - strand, within CA264_18295at 4255.094 kb on + strand, within CA264_18295at 4255.095 kb on - strand, within CA264_18295at 4255.095 kb on - strand, within CA264_18295at 4255.134 kb on + strand, within CA264_18295at 4255.134 kb on + strand, within CA264_18295at 4255.304 kb on + strand, within CA264_18295at 4255.304 kb on + strand, within CA264_18295at 4255.351 kb on - strand, within CA264_18295at 4255.456 kb on - strandat 4255.456 kb on - strandat 4255.456 kb on - strandat 4255.535 kb on + strandat 4255.536 kb on - strandat 4255.541 kb on - strandat 4255.650 kb on - strandat 4255.661 kb on + strandat 4255.661 kb on + strandat 4255.695 kb on + strandat 4255.698 kb on + strandat 4255.710 kb on + strandat 4255.711 kb on - strandat 4255.760 kb on + strandat 4255.760 kb on + strandat 4255.776 kb on - strandat 4255.776 kb on - strandat 4255.791 kb on - strandat 4255.940 kb on - strand, within CA264_18300at 4256.023 kb on + strand, within CA264_18300at 4256.023 kb on + strand, within CA264_18300at 4256.023 kb on + strand, within CA264_18300at 4256.024 kb on - strandat 4256.024 kb on - strand, within CA264_18300at 4256.024 kb on - strand, within CA264_18300at 4256.024 kb on - strand, within CA264_18300at 4256.027 kb on + strand, within CA264_18300at 4256.027 kb on + strand, within CA264_18300at 4256.027 kb on + strand, within CA264_18300at 4256.029 kb on + strand, within CA264_18300at 4256.029 kb on + strand, within CA264_18300at 4256.050 kb on + strand, within CA264_18300at 4256.117 kb on - strand, within CA264_18300at 4256.117 kb on - strand, within CA264_18300at 4256.122 kb on + strand, within CA264_18300at 4256.122 kb on + strand, within CA264_18300at 4256.122 kb on + strand, within CA264_18300at 4256.122 kb on + strand, within CA264_18300at 4256.123 kb on - strand, within CA264_18300at 4256.123 kb on - strand, within CA264_18300at 4256.123 kb on - strand, within CA264_18300at 4256.123 kb on - strand, within CA264_18300at 4256.152 kb on + strand, within CA264_18300at 4256.230 kb on + strand, within CA264_18300at 4256.231 kb on - strand, within CA264_18300at 4256.231 kb on - strand, within CA264_18300at 4256.281 kb on - strand, within CA264_18300at 4256.281 kb on - strand, within CA264_18300at 4256.385 kb on + strand, within CA264_18300at 4256.428 kb on + strand, within CA264_18300at 4256.429 kb on - strand, within CA264_18300at 4256.479 kb on + strand, within CA264_18300

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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4,253,275 + CA264_18290 0.40 -0.2
4,253,277 + CA264_18290 0.40 -0.8
4,253,319 - CA264_18290 0.43 +1.2
4,253,325 - CA264_18290 0.44 -1.9
4,253,345 + CA264_18290 0.45 -0.9
4,253,349 - CA264_18290 0.46 -0.2
4,253,391 + CA264_18290 0.49 +1.9
4,253,396 + CA264_18290 0.50 -3.1
4,253,396 + CA264_18290 0.50 -0.0
4,253,448 + CA264_18290 0.54 -0.7
4,253,453 - CA264_18290 0.54 +0.0
4,253,505 - CA264_18290 0.58 -0.2
4,253,541 + CA264_18290 0.61 -0.1
4,253,542 - CA264_18290 0.62 +1.4
4,253,654 + CA264_18290 0.71 +0.4
4,253,655 - CA264_18290 0.71 +0.2
4,253,905 - -0.9
4,253,942 - -0.5
4,254,005 + -0.2
4,254,005 + +0.3
4,254,060 + -0.4
4,254,061 - -0.1
4,254,096 + -0.6
4,254,096 + -0.1
4,254,096 + -1.2
4,254,113 + +1.3
4,254,153 + -0.3
4,254,299 + +0.2
4,254,300 - -1.7
4,254,300 - -1.7
4,254,301 + -1.1
4,254,301 + -1.0
4,254,301 + -1.1
4,254,302 - -0.6
4,254,448 + CA264_18295 0.20 -1.8
4,254,507 + CA264_18295 0.24 -1.4
4,254,507 + CA264_18295 0.24 -0.2
4,254,544 - CA264_18295 0.27 -0.9
4,254,555 + CA264_18295 0.28 -1.7
4,254,556 - CA264_18295 0.28 -1.2
4,254,560 - CA264_18295 0.28 -0.5
4,254,580 - CA264_18295 0.30 -1.0
4,254,680 + CA264_18295 0.37 -0.0
4,254,681 - CA264_18295 0.37 +0.2
4,254,687 + CA264_18295 0.37 -0.4
4,254,756 - CA264_18295 0.42 -0.7
4,254,868 + CA264_18295 0.51 +0.2
4,254,869 - CA264_18295 0.51 -1.6
4,254,970 - CA264_18295 0.58 -2.5
4,255,094 + CA264_18295 0.67 -1.4
4,255,095 - CA264_18295 0.67 -1.2
4,255,095 - CA264_18295 0.67 -1.6
4,255,134 + CA264_18295 0.70 -0.8
4,255,134 + CA264_18295 0.70 -0.7
4,255,304 + CA264_18295 0.82 -0.8
4,255,304 + CA264_18295 0.82 -1.0
4,255,351 - CA264_18295 0.86 -1.6
4,255,456 - -0.4
4,255,456 - -0.8
4,255,456 - +0.9
4,255,535 + -0.2
4,255,536 - -0.7
4,255,541 - -1.1
4,255,650 - -0.1
4,255,661 + -0.1
4,255,661 + +0.3
4,255,695 + -0.8
4,255,698 + -0.5
4,255,710 + +0.1
4,255,711 - -0.2
4,255,760 + -0.8
4,255,760 + -1.8
4,255,776 - +0.5
4,255,776 - -1.9
4,255,791 - -0.4
4,255,940 - CA264_18300 0.10 -1.5
4,256,023 + CA264_18300 0.15 -0.0
4,256,023 + CA264_18300 0.15 -1.2
4,256,023 + CA264_18300 0.15 +0.4
4,256,024 - +1.7
4,256,024 - CA264_18300 0.16 +0.7
4,256,024 - CA264_18300 0.16 +0.9
4,256,024 - CA264_18300 0.16 +0.2
4,256,027 + CA264_18300 0.16 +0.1
4,256,027 + CA264_18300 0.16 -0.0
4,256,027 + CA264_18300 0.16 +0.0
4,256,029 + CA264_18300 0.16 +0.4
4,256,029 + CA264_18300 0.16 -0.4
4,256,050 + CA264_18300 0.17 -0.7
4,256,117 - CA264_18300 0.22 +0.8
4,256,117 - CA264_18300 0.22 -1.2
4,256,122 + CA264_18300 0.22 -0.4
4,256,122 + CA264_18300 0.22 -0.2
4,256,122 + CA264_18300 0.22 +2.0
4,256,122 + CA264_18300 0.22 -0.0
4,256,123 - CA264_18300 0.22 +0.3
4,256,123 - CA264_18300 0.22 +0.6
4,256,123 - CA264_18300 0.22 +0.2
4,256,123 - CA264_18300 0.22 -1.1
4,256,152 + CA264_18300 0.24 -0.1
4,256,230 + CA264_18300 0.29 +0.1
4,256,231 - CA264_18300 0.29 -0.3
4,256,231 - CA264_18300 0.29 -0.4
4,256,281 - CA264_18300 0.32 +0.4
4,256,281 - CA264_18300 0.32 -0.4
4,256,385 + CA264_18300 0.39 -0.7
4,256,428 + CA264_18300 0.41 -0.2
4,256,429 - CA264_18300 0.42 -0.3
4,256,479 + CA264_18300 0.45 -0.1

Or see this region's nucleotide sequence