Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18095

Experiment: m.b. Cisplatin 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_18090 and CA264_18095 are separated by 88 nucleotidesCA264_18095 and CA264_18100 are separated by 60 nucleotides CA264_18090: CA264_18090 - DUF305 domain-containing protein, at 4,207,174 to 4,207,755 _18090 CA264_18095: CA264_18095 - hypothetical protein, at 4,207,844 to 4,208,419 _18095 CA264_18100: CA264_18100 - ABC-ATPase UvrA, at 4,208,480 to 4,211,395 _18100 Position (kb) 4207 4208 4209Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4206.861 kb on + strandat 4206.861 kb on + strandat 4206.883 kb on + strandat 4206.899 kb on - strandat 4206.899 kb on - strandat 4206.902 kb on + strandat 4206.903 kb on - strandat 4206.942 kb on + strandat 4206.943 kb on - strandat 4206.943 kb on - strandat 4206.980 kb on + strandat 4207.002 kb on - strandat 4207.127 kb on - strandat 4207.127 kb on - strandat 4207.162 kb on + strandat 4207.166 kb on - strandat 4207.167 kb on + strandat 4207.168 kb on - strandat 4207.302 kb on + strand, within CA264_18090at 4207.303 kb on - strand, within CA264_18090at 4207.303 kb on - strand, within CA264_18090at 4207.320 kb on + strand, within CA264_18090at 4207.321 kb on - strand, within CA264_18090at 4207.415 kb on + strand, within CA264_18090at 4207.415 kb on + strand, within CA264_18090at 4207.582 kb on + strand, within CA264_18090at 4207.583 kb on - strand, within CA264_18090at 4207.649 kb on + strand, within CA264_18090at 4207.650 kb on - strand, within CA264_18090at 4207.650 kb on - strand, within CA264_18090at 4207.753 kb on + strandat 4207.754 kb on - strandat 4207.754 kb on - strandat 4207.775 kb on + strandat 4207.776 kb on - strandat 4207.779 kb on + strandat 4207.784 kb on + strandat 4207.795 kb on + strandat 4207.796 kb on - strandat 4207.818 kb on + strandat 4207.881 kb on + strandat 4207.948 kb on - strand, within CA264_18095at 4208.032 kb on - strand, within CA264_18095at 4208.032 kb on - strand, within CA264_18095at 4208.230 kb on + strand, within CA264_18095at 4208.230 kb on + strand, within CA264_18095at 4208.272 kb on - strand, within CA264_18095at 4208.339 kb on + strand, within CA264_18095at 4208.340 kb on - strand, within CA264_18095at 4208.414 kb on - strandat 4208.511 kb on + strandat 4208.635 kb on + strandat 4208.647 kb on - strandat 4208.687 kb on - strandat 4208.690 kb on + strandat 4208.691 kb on - strandat 4208.711 kb on - strandat 4208.721 kb on - strandat 4208.784 kb on + strand, within CA264_18100at 4208.785 kb on - strand, within CA264_18100at 4208.864 kb on - strand, within CA264_18100at 4209.092 kb on + strand, within CA264_18100at 4209.287 kb on + strand, within CA264_18100at 4209.288 kb on - strand, within CA264_18100at 4209.288 kb on - strand, within CA264_18100at 4209.290 kb on + strand, within CA264_18100at 4209.291 kb on - strand, within CA264_18100at 4209.379 kb on - strand, within CA264_18100

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
remove
4,206,861 + +0.7
4,206,861 + +0.6
4,206,883 + -0.4
4,206,899 - +0.5
4,206,899 - -0.2
4,206,902 + +1.1
4,206,903 - -0.6
4,206,942 + +0.9
4,206,943 - +2.0
4,206,943 - +0.3
4,206,980 + -0.8
4,207,002 - +0.3
4,207,127 - +0.2
4,207,127 - -0.2
4,207,162 + +0.0
4,207,166 - +0.5
4,207,167 + +0.2
4,207,168 - -1.2
4,207,302 + CA264_18090 0.22 -0.3
4,207,303 - CA264_18090 0.22 -0.3
4,207,303 - CA264_18090 0.22 -0.2
4,207,320 + CA264_18090 0.25 +0.7
4,207,321 - CA264_18090 0.25 -0.3
4,207,415 + CA264_18090 0.41 +1.3
4,207,415 + CA264_18090 0.41 -0.4
4,207,582 + CA264_18090 0.70 -0.9
4,207,583 - CA264_18090 0.70 +0.6
4,207,649 + CA264_18090 0.82 +0.1
4,207,650 - CA264_18090 0.82 -2.8
4,207,650 - CA264_18090 0.82 -1.4
4,207,753 + +0.2
4,207,754 - +0.4
4,207,754 - -1.1
4,207,775 + -0.0
4,207,776 - -0.4
4,207,779 + +0.1
4,207,784 + -0.4
4,207,795 + -1.4
4,207,796 - -0.8
4,207,818 + +0.9
4,207,881 + -0.2
4,207,948 - CA264_18095 0.18 -0.4
4,208,032 - CA264_18095 0.33 +0.3
4,208,032 - CA264_18095 0.33 +0.7
4,208,230 + CA264_18095 0.67 -0.5
4,208,230 + CA264_18095 0.67 -0.3
4,208,272 - CA264_18095 0.74 -1.3
4,208,339 + CA264_18095 0.86 -0.6
4,208,340 - CA264_18095 0.86 +1.3
4,208,414 - +0.7
4,208,511 + +0.3
4,208,635 + -1.3
4,208,647 - -2.9
4,208,687 - -2.2
4,208,690 + -3.8
4,208,691 - -2.2
4,208,711 - -2.1
4,208,721 - -2.8
4,208,784 + CA264_18100 0.10 -3.2
4,208,785 - CA264_18100 0.10 -1.8
4,208,864 - CA264_18100 0.13 -1.2
4,209,092 + CA264_18100 0.21 -1.1
4,209,287 + CA264_18100 0.28 +0.7
4,209,288 - CA264_18100 0.28 -3.4
4,209,288 - CA264_18100 0.28 -2.2
4,209,290 + CA264_18100 0.28 -2.5
4,209,291 - CA264_18100 0.28 -3.4
4,209,379 - CA264_18100 0.31 -1.8

Or see this region's nucleotide sequence