Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17870

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17865 and CA264_17870 are separated by 96 nucleotidesCA264_17870 and CA264_17875 are separated by 105 nucleotides CA264_17865: CA264_17865 - CPBP family intramembrane metalloprotease domain-containing protein, at 4,154,248 to 4,155,213 _17865 CA264_17870: CA264_17870 - phosphatidate cytidylyltransferase, at 4,155,310 to 4,156,095 _17870 CA264_17875: CA264_17875 - amino acid dehydrogenase, at 4,156,201 to 4,157,475 _17875 Position (kb) 4155 4156 4157Strain fitness (log2 ratio) -1 0 1 2at 4155.211 kb on + strandat 4155.212 kb on - strandat 4155.223 kb on - strandat 4155.233 kb on + strandat 4155.233 kb on + strandat 4155.233 kb on + strandat 4155.233 kb on + strandat 4155.236 kb on - strandat 4156.125 kb on + strandat 4156.307 kb on + strandat 4156.308 kb on - strandat 4156.404 kb on - strand, within CA264_17875at 4156.565 kb on - strand, within CA264_17875at 4156.627 kb on - strand, within CA264_17875at 4156.650 kb on - strand, within CA264_17875at 4157.094 kb on - strand, within CA264_17875

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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4,155,211 + -0.4
4,155,212 - +0.1
4,155,223 - +0.1
4,155,233 + -0.2
4,155,233 + -0.2
4,155,233 + -0.4
4,155,233 + +2.7
4,155,236 - +1.0
4,156,125 + +1.3
4,156,307 + -1.0
4,156,308 - +0.5
4,156,404 - CA264_17875 0.16 +0.2
4,156,565 - CA264_17875 0.29 +1.0
4,156,627 - CA264_17875 0.33 +0.5
4,156,650 - CA264_17875 0.35 -1.0
4,157,094 - CA264_17875 0.70 +0.4

Or see this region's nucleotide sequence