Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17655

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17645 and CA264_17650 overlap by 18 nucleotidesCA264_17650 and CA264_17655 overlap by 11 nucleotidesCA264_17655 and CA264_17660 overlap by 4 nucleotidesCA264_17660 and CA264_17665 are separated by 155 nucleotides CA264_17645: CA264_17645 - AraC family transcriptional regulator, at 4,108,346 to 4,109,272 _17645 CA264_17650: CA264_17650 - geranylgeranylglyceryl/heptaprenylglyceryl phosphate synthase, at 4,109,255 to 4,110,022 _17650 CA264_17655: CA264_17655 - hypothetical protein, at 4,110,012 to 4,110,605 _17655 CA264_17660: CA264_17660 - hypothetical protein, at 4,110,602 to 4,110,982 _17660 CA264_17665: CA264_17665 - molecular chaperone DnaJ, at 4,111,138 to 4,112,253 _17665 Position (kb) 4110 4111Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4109.270 kb on + strandat 4109.270 kb on + strandat 4109.270 kb on + strandat 4109.271 kb on - strandat 4109.333 kb on + strand, within CA264_17650at 4109.334 kb on - strand, within CA264_17650at 4109.508 kb on + strand, within CA264_17650at 4109.509 kb on - strand, within CA264_17650at 4109.555 kb on - strand, within CA264_17650at 4109.566 kb on + strand, within CA264_17650at 4109.576 kb on - strand, within CA264_17650at 4109.595 kb on + strand, within CA264_17650at 4109.687 kb on - strand, within CA264_17650at 4109.765 kb on + strand, within CA264_17650at 4109.766 kb on - strand, within CA264_17650at 4109.819 kb on + strand, within CA264_17650at 4109.958 kb on - strandat 4109.981 kb on + strandat 4109.982 kb on - strandat 4109.982 kb on - strandat 4109.983 kb on + strandat 4109.983 kb on + strandat 4109.984 kb on - strandat 4110.013 kb on + strandat 4110.038 kb on + strandat 4110.039 kb on - strandat 4110.040 kb on + strandat 4110.054 kb on + strandat 4110.055 kb on - strandat 4110.072 kb on + strand, within CA264_17655at 4110.090 kb on - strand, within CA264_17655at 4110.114 kb on + strand, within CA264_17655at 4110.115 kb on - strand, within CA264_17655at 4110.142 kb on + strand, within CA264_17655at 4110.142 kb on + strand, within CA264_17655at 4110.150 kb on + strand, within CA264_17655at 4110.151 kb on - strand, within CA264_17655at 4110.200 kb on + strand, within CA264_17655at 4110.200 kb on + strand, within CA264_17655at 4110.304 kb on + strand, within CA264_17655at 4110.605 kb on + strandat 4110.605 kb on + strandat 4110.606 kb on - strandat 4110.670 kb on + strand, within CA264_17660at 4110.671 kb on - strand, within CA264_17660at 4110.714 kb on - strand, within CA264_17660at 4110.731 kb on + strand, within CA264_17660at 4110.765 kb on - strand, within CA264_17660at 4110.765 kb on - strand, within CA264_17660at 4110.854 kb on + strand, within CA264_17660at 4110.882 kb on - strand, within CA264_17660at 4110.894 kb on - strand, within CA264_17660at 4110.899 kb on - strand, within CA264_17660at 4110.899 kb on - strand, within CA264_17660at 4110.899 kb on - strand, within CA264_17660at 4110.902 kb on + strand, within CA264_17660at 4110.902 kb on + strand, within CA264_17660at 4110.903 kb on - strand, within CA264_17660at 4110.903 kb on - strand, within CA264_17660at 4110.903 kb on - strand, within CA264_17660at 4110.918 kb on + strand, within CA264_17660at 4110.982 kb on + strandat 4111.023 kb on + strandat 4111.065 kb on - strandat 4111.084 kb on - strandat 4111.084 kb on - strandat 4111.106 kb on + strandat 4111.106 kb on + strandat 4111.153 kb on + strandat 4111.207 kb on + strandat 4111.208 kb on - strandat 4111.295 kb on - strand, within CA264_17665at 4111.295 kb on - strand, within CA264_17665at 4111.317 kb on + strand, within CA264_17665at 4111.331 kb on - strand, within CA264_17665at 4111.455 kb on + strand, within CA264_17665at 4111.456 kb on - strand, within CA264_17665at 4111.507 kb on - strand, within CA264_17665at 4111.584 kb on + strand, within CA264_17665at 4111.585 kb on - strand, within CA264_17665at 4111.590 kb on + strand, within CA264_17665

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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4,109,270 + -1.1
4,109,270 + -0.0
4,109,270 + +0.9
4,109,271 - -1.7
4,109,333 + CA264_17650 0.10 -0.3
4,109,334 - CA264_17650 0.10 -0.5
4,109,508 + CA264_17650 0.33 -1.5
4,109,509 - CA264_17650 0.33 -1.2
4,109,555 - CA264_17650 0.39 -0.7
4,109,566 + CA264_17650 0.40 +2.4
4,109,576 - CA264_17650 0.42 -0.5
4,109,595 + CA264_17650 0.44 -0.3
4,109,687 - CA264_17650 0.56 +1.0
4,109,765 + CA264_17650 0.66 -2.0
4,109,766 - CA264_17650 0.67 +0.6
4,109,819 + CA264_17650 0.73 +0.2
4,109,958 - -1.1
4,109,981 + +1.1
4,109,982 - +0.4
4,109,982 - -2.5
4,109,983 + -0.6
4,109,983 + -1.9
4,109,984 - +0.8
4,110,013 + +0.5
4,110,038 + -0.4
4,110,039 - -0.1
4,110,040 + -0.1
4,110,054 + -0.8
4,110,055 - -0.0
4,110,072 + CA264_17655 0.10 +0.8
4,110,090 - CA264_17655 0.13 -0.3
4,110,114 + CA264_17655 0.17 +0.5
4,110,115 - CA264_17655 0.17 -0.9
4,110,142 + CA264_17655 0.22 -0.3
4,110,142 + CA264_17655 0.22 -0.6
4,110,150 + CA264_17655 0.23 -0.7
4,110,151 - CA264_17655 0.23 +0.0
4,110,200 + CA264_17655 0.32 -0.4
4,110,200 + CA264_17655 0.32 +0.0
4,110,304 + CA264_17655 0.49 +1.0
4,110,605 + -0.5
4,110,605 + -1.0
4,110,606 - +0.2
4,110,670 + CA264_17660 0.18 -0.4
4,110,671 - CA264_17660 0.18 -0.3
4,110,714 - CA264_17660 0.29 -1.0
4,110,731 + CA264_17660 0.34 -1.3
4,110,765 - CA264_17660 0.43 -0.2
4,110,765 - CA264_17660 0.43 +0.4
4,110,854 + CA264_17660 0.66 -0.8
4,110,882 - CA264_17660 0.73 -1.6
4,110,894 - CA264_17660 0.77 -0.8
4,110,899 - CA264_17660 0.78 -0.3
4,110,899 - CA264_17660 0.78 -1.4
4,110,899 - CA264_17660 0.78 -0.4
4,110,902 + CA264_17660 0.79 -1.9
4,110,902 + CA264_17660 0.79 -0.6
4,110,903 - CA264_17660 0.79 +0.1
4,110,903 - CA264_17660 0.79 -0.1
4,110,903 - CA264_17660 0.79 -0.4
4,110,918 + CA264_17660 0.83 -0.8
4,110,982 + -0.1
4,111,023 + +0.5
4,111,065 - -0.4
4,111,084 - -1.0
4,111,084 - -0.5
4,111,106 + +0.6
4,111,106 + -1.4
4,111,153 + -0.3
4,111,207 + -0.7
4,111,208 - -1.0
4,111,295 - CA264_17665 0.14 -0.3
4,111,295 - CA264_17665 0.14 -1.1
4,111,317 + CA264_17665 0.16 -2.2
4,111,331 - CA264_17665 0.17 -0.9
4,111,455 + CA264_17665 0.28 +1.1
4,111,456 - CA264_17665 0.28 -3.2
4,111,507 - CA264_17665 0.33 -0.6
4,111,584 + CA264_17665 0.40 -0.6
4,111,585 - CA264_17665 0.40 -1.2
4,111,590 + CA264_17665 0.41 -0.9

Or see this region's nucleotide sequence