Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17620

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17615 and CA264_17620 are separated by 95 nucleotidesCA264_17620 and CA264_17625 are separated by 9 nucleotides CA264_17615: CA264_17615 - pantoate--beta-alanine ligase, at 4,103,298 to 4,104,152 _17615 CA264_17620: CA264_17620 - aspartate 1-decarboxylase, at 4,104,248 to 4,104,595 _17620 CA264_17625: CA264_17625 - TIGR00374 family protein, at 4,104,605 to 4,105,651 _17625 Position (kb) 4104 4105Strain fitness (log2 ratio) -1 0 1at 4103.268 kb on - strandat 4104.150 kb on + strandat 4104.150 kb on + strandat 4104.178 kb on - strandat 4104.199 kb on + strandat 4104.199 kb on + strandat 4104.199 kb on + strandat 4104.199 kb on + strandat 4104.199 kb on + strandat 4104.199 kb on + strandat 4104.200 kb on - strandat 4104.200 kb on - strandat 4104.214 kb on + strandat 4104.214 kb on + strandat 4104.218 kb on + strandat 4104.232 kb on - strandat 4104.243 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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4,103,268 - -0.9
4,104,150 + -1.3
4,104,150 + -0.7
4,104,178 - +0.1
4,104,199 + -0.6
4,104,199 + +0.6
4,104,199 + -0.6
4,104,199 + +0.2
4,104,199 + +0.2
4,104,199 + +0.4
4,104,200 - -0.9
4,104,200 - -0.0
4,104,214 + -1.5
4,104,214 + -1.2
4,104,218 + -0.3
4,104,232 - +0.0
4,104,243 - +0.5

Or see this region's nucleotide sequence