Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17190

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17180 and CA264_17185 are separated by 341 nucleotidesCA264_17185 and CA264_17190 are separated by 38 nucleotidesCA264_17190 and CA264_17195 are separated by 7 nucleotidesCA264_17195 and CA264_17200 are separated by 167 nucleotides CA264_17180: CA264_17180 - hypothetical protein, at 3,999,536 to 3,999,976 _17180 CA264_17185: CA264_17185 - peptide-methionine (R)-S-oxide reductase, at 4,000,318 to 4,000,716 _17185 CA264_17190: CA264_17190 - methionine-R-sulfoxide reductase, at 4,000,755 to 4,001,078 _17190 CA264_17195: CA264_17195 - hypothetical protein, at 4,001,086 to 4,001,760 _17195 CA264_17200: CA264_17200 - peptide-methionine (S)-S-oxide reductase, at 4,001,928 to 4,002,473 _17200 Position (kb) 4000 4001 4002Strain fitness (log2 ratio) -2 -1 0 1 2at 3999.763 kb on - strand, within CA264_17180at 3999.889 kb on + strand, within CA264_17180at 3999.890 kb on - strand, within CA264_17180at 3999.890 kb on - strand, within CA264_17180at 3999.897 kb on - strand, within CA264_17180at 3999.966 kb on + strandat 3999.989 kb on + strandat 3999.996 kb on + strandat 4000.126 kb on - strandat 4000.133 kb on + strandat 4000.134 kb on - strandat 4000.134 kb on - strandat 4000.191 kb on + strandat 4000.193 kb on + strandat 4000.194 kb on - strandat 4000.237 kb on + strandat 4000.290 kb on + strandat 4000.291 kb on - strandat 4000.291 kb on - strandat 4000.312 kb on + strandat 4000.347 kb on + strandat 4000.348 kb on - strandat 4000.378 kb on - strand, within CA264_17185at 4000.444 kb on + strand, within CA264_17185at 4000.444 kb on + strand, within CA264_17185at 4000.445 kb on - strand, within CA264_17185at 4000.487 kb on - strand, within CA264_17185at 4000.653 kb on - strand, within CA264_17185at 4000.653 kb on - strand, within CA264_17185at 4000.749 kb on + strandat 4000.749 kb on + strandat 4000.750 kb on - strandat 4000.775 kb on - strandat 4000.809 kb on + strand, within CA264_17190at 4001.026 kb on - strand, within CA264_17190at 4001.030 kb on + strand, within CA264_17190at 4001.031 kb on - strand, within CA264_17190at 4001.076 kb on + strandat 4001.101 kb on - strandat 4001.245 kb on + strand, within CA264_17195at 4001.315 kb on + strand, within CA264_17195at 4001.330 kb on - strand, within CA264_17195at 4001.360 kb on + strand, within CA264_17195at 4001.373 kb on - strand, within CA264_17195at 4001.594 kb on + strand, within CA264_17195at 4001.595 kb on - strand, within CA264_17195at 4001.637 kb on + strand, within CA264_17195at 4001.638 kb on - strand, within CA264_17195at 4001.638 kb on - strand, within CA264_17195at 4001.638 kb on - strand, within CA264_17195at 4001.715 kb on + strandat 4001.719 kb on + strandat 4001.719 kb on + strandat 4001.751 kb on + strandat 4001.752 kb on - strandat 4001.763 kb on - strandat 4001.778 kb on - strandat 4001.830 kb on + strandat 4001.851 kb on - strandat 4001.851 kb on - strandat 4001.857 kb on - strandat 4001.862 kb on - strandat 4001.869 kb on + strandat 4001.870 kb on - strandat 4001.875 kb on + strandat 4001.926 kb on - strandat 4001.926 kb on - strandat 4001.926 kb on - strandat 4001.935 kb on + strandat 4001.936 kb on - strandat 4001.966 kb on + strandat 4002.035 kb on - strand, within CA264_17200at 4002.045 kb on - strand, within CA264_17200at 4002.048 kb on + strand, within CA264_17200at 4002.049 kb on - strand, within CA264_17200

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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3,999,763 - CA264_17180 0.51 +0.2
3,999,889 + CA264_17180 0.80 -0.7
3,999,890 - CA264_17180 0.80 -0.3
3,999,890 - CA264_17180 0.80 +0.7
3,999,897 - CA264_17180 0.82 +0.7
3,999,966 + -1.3
3,999,989 + +1.2
3,999,996 + -0.3
4,000,126 - +0.7
4,000,133 + -0.7
4,000,134 - -0.2
4,000,134 - -0.4
4,000,191 + -0.8
4,000,193 + -0.5
4,000,194 - -0.5
4,000,237 + +0.9
4,000,290 + -0.1
4,000,291 - -0.2
4,000,291 - +0.4
4,000,312 + -0.8
4,000,347 + -0.4
4,000,348 - -0.7
4,000,378 - CA264_17185 0.15 -0.7
4,000,444 + CA264_17185 0.32 +0.2
4,000,444 + CA264_17185 0.32 -0.4
4,000,445 - CA264_17185 0.32 +0.2
4,000,487 - CA264_17185 0.42 -0.0
4,000,653 - CA264_17185 0.84 +0.3
4,000,653 - CA264_17185 0.84 +1.8
4,000,749 + -0.2
4,000,749 + +0.0
4,000,750 - -0.5
4,000,775 - -0.2
4,000,809 + CA264_17190 0.17 -2.1
4,001,026 - CA264_17190 0.84 -0.0
4,001,030 + CA264_17190 0.85 -0.6
4,001,031 - CA264_17190 0.85 -1.4
4,001,076 + -0.2
4,001,101 - +0.2
4,001,245 + CA264_17195 0.24 -1.3
4,001,315 + CA264_17195 0.34 -1.5
4,001,330 - CA264_17195 0.36 +0.2
4,001,360 + CA264_17195 0.41 +0.7
4,001,373 - CA264_17195 0.43 +0.6
4,001,594 + CA264_17195 0.75 -1.2
4,001,595 - CA264_17195 0.75 +0.9
4,001,637 + CA264_17195 0.82 -0.8
4,001,638 - CA264_17195 0.82 -0.8
4,001,638 - CA264_17195 0.82 +0.1
4,001,638 - CA264_17195 0.82 +0.4
4,001,715 + +0.7
4,001,719 + -0.4
4,001,719 + +0.7
4,001,751 + -0.2
4,001,752 - +1.4
4,001,763 - -0.3
4,001,778 - -0.5
4,001,830 + +0.8
4,001,851 - -1.2
4,001,851 - +0.0
4,001,857 - -1.0
4,001,862 - +0.1
4,001,869 + +1.4
4,001,870 - +0.3
4,001,875 + -0.4
4,001,926 - +0.1
4,001,926 - -1.2
4,001,926 - +1.4
4,001,935 + -0.2
4,001,936 - -0.1
4,001,966 + -0.3
4,002,035 - CA264_17200 0.20 -0.3
4,002,045 - CA264_17200 0.21 +0.6
4,002,048 + CA264_17200 0.22 -0.1
4,002,049 - CA264_17200 0.22 +0.7

Or see this region's nucleotide sequence