Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13340

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13325 and CA264_13330 are separated by 71 nucleotidesCA264_13330 and CA264_13335 are separated by 33 nucleotidesCA264_13335 and CA264_13340 are separated by 154 nucleotidesCA264_13340 and CA264_13345 are separated by 504 nucleotides CA264_13325: CA264_13325 - phosphoserine aminotransferase, at 3,110,011 to 3,111,099 _13325 CA264_13330: CA264_13330 - hypothetical protein, at 3,111,171 to 3,111,359 _13330 CA264_13335: CA264_13335 - hypothetical protein, at 3,111,393 to 3,111,926 _13335 CA264_13340: CA264_13340 - iron-sulfur cluster assembly accessory protein, at 3,112,081 to 3,112,428 _13340 CA264_13345: CA264_13345 - iron-regulated protein, at 3,112,933 to 3,113,814 _13345 Position (kb) 3112 3113Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3111.144 kb on + strandat 3111.145 kb on - strandat 3111.148 kb on + strandat 3111.148 kb on + strandat 3111.148 kb on + strandat 3111.148 kb on + strandat 3111.148 kb on + strandat 3111.149 kb on - strandat 3111.149 kb on - strandat 3111.149 kb on - strandat 3111.149 kb on - strandat 3111.228 kb on - strand, within CA264_13330at 3111.254 kb on + strand, within CA264_13330at 3111.305 kb on + strand, within CA264_13330at 3111.305 kb on + strand, within CA264_13330at 3111.309 kb on + strand, within CA264_13330at 3111.310 kb on - strand, within CA264_13330at 3111.310 kb on - strand, within CA264_13330at 3111.371 kb on - strandat 3111.380 kb on + strandat 3111.380 kb on + strandat 3111.394 kb on + strandat 3111.525 kb on - strand, within CA264_13335at 3111.571 kb on - strand, within CA264_13335at 3111.598 kb on + strand, within CA264_13335at 3111.598 kb on + strand, within CA264_13335at 3111.599 kb on - strand, within CA264_13335at 3111.617 kb on + strand, within CA264_13335at 3111.618 kb on - strand, within CA264_13335at 3111.690 kb on + strand, within CA264_13335at 3111.717 kb on - strand, within CA264_13335at 3111.830 kb on - strand, within CA264_13335at 3111.847 kb on + strand, within CA264_13335at 3111.847 kb on + strand, within CA264_13335at 3111.850 kb on + strand, within CA264_13335at 3111.851 kb on - strand, within CA264_13335at 3111.851 kb on - strand, within CA264_13335at 3111.879 kb on + strandat 3111.935 kb on + strandat 3111.948 kb on - strandat 3112.011 kb on + strandat 3112.011 kb on + strandat 3112.012 kb on - strandat 3112.078 kb on - strandat 3112.110 kb on - strandat 3112.110 kb on - strandat 3112.110 kb on - strandat 3112.300 kb on - strand, within CA264_13340at 3112.389 kb on + strand, within CA264_13340at 3112.390 kb on - strand, within CA264_13340at 3112.471 kb on + strandat 3112.494 kb on - strandat 3112.494 kb on - strandat 3112.500 kb on - strandat 3112.500 kb on - strandat 3112.604 kb on + strandat 3112.605 kb on - strandat 3112.605 kb on - strandat 3112.612 kb on - strandat 3112.613 kb on + strandat 3112.669 kb on - strandat 3112.726 kb on - strandat 3112.823 kb on - strandat 3112.841 kb on - strandat 3112.841 kb on - strandat 3112.970 kb on - strandat 3112.972 kb on - strandat 3113.012 kb on - strandat 3113.071 kb on + strand, within CA264_13345at 3113.072 kb on - strand, within CA264_13345at 3113.072 kb on - strand, within CA264_13345at 3113.137 kb on - strand, within CA264_13345at 3113.158 kb on + strand, within CA264_13345at 3113.175 kb on + strand, within CA264_13345at 3113.309 kb on + strand, within CA264_13345at 3113.309 kb on + strand, within CA264_13345

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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3,111,144 + -0.6
3,111,145 - -1.0
3,111,148 + -0.8
3,111,148 + -0.1
3,111,148 + +1.3
3,111,148 + +0.2
3,111,148 + +0.6
3,111,149 - -3.0
3,111,149 - -1.5
3,111,149 - -1.2
3,111,149 - +0.2
3,111,228 - CA264_13330 0.30 -0.3
3,111,254 + CA264_13330 0.44 +0.1
3,111,305 + CA264_13330 0.71 -0.2
3,111,305 + CA264_13330 0.71 -1.9
3,111,309 + CA264_13330 0.73 -3.1
3,111,310 - CA264_13330 0.74 +0.9
3,111,310 - CA264_13330 0.74 +1.1
3,111,371 - -1.1
3,111,380 + -0.3
3,111,380 + +0.6
3,111,394 + +0.1
3,111,525 - CA264_13335 0.25 +1.9
3,111,571 - CA264_13335 0.33 -0.1
3,111,598 + CA264_13335 0.38 -0.4
3,111,598 + CA264_13335 0.38 -0.4
3,111,599 - CA264_13335 0.39 +0.3
3,111,617 + CA264_13335 0.42 -0.0
3,111,618 - CA264_13335 0.42 +0.2
3,111,690 + CA264_13335 0.56 +0.2
3,111,717 - CA264_13335 0.61 -0.0
3,111,830 - CA264_13335 0.82 -1.4
3,111,847 + CA264_13335 0.85 -0.6
3,111,847 + CA264_13335 0.85 +0.2
3,111,850 + CA264_13335 0.86 -0.6
3,111,851 - CA264_13335 0.86 -2.2
3,111,851 - CA264_13335 0.86 -0.2
3,111,879 + -0.0
3,111,935 + +0.3
3,111,948 - +2.1
3,112,011 + -0.5
3,112,011 + -1.6
3,112,012 - -2.5
3,112,078 - +0.8
3,112,110 - +0.2
3,112,110 - -0.8
3,112,110 - -0.9
3,112,300 - CA264_13340 0.63 -1.4
3,112,389 + CA264_13340 0.89 -0.7
3,112,390 - CA264_13340 0.89 -0.8
3,112,471 + -0.6
3,112,494 - +0.8
3,112,494 - +0.3
3,112,500 - -0.0
3,112,500 - -1.4
3,112,604 + -0.4
3,112,605 - -0.9
3,112,605 - -2.4
3,112,612 - +0.3
3,112,613 + +1.4
3,112,669 - +1.0
3,112,726 - -0.1
3,112,823 - -0.5
3,112,841 - -0.6
3,112,841 - +0.8
3,112,970 - +0.3
3,112,972 - -0.1
3,113,012 - -1.4
3,113,071 + CA264_13345 0.16 -0.4
3,113,072 - CA264_13345 0.16 -0.3
3,113,072 - CA264_13345 0.16 +0.9
3,113,137 - CA264_13345 0.23 -0.8
3,113,158 + CA264_13345 0.26 -0.1
3,113,175 + CA264_13345 0.27 -0.6
3,113,309 + CA264_13345 0.43 -0.9
3,113,309 + CA264_13345 0.43 +0.0

Or see this region's nucleotide sequence