Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12930

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12920 and CA264_12925 are separated by 88 nucleotidesCA264_12925 and CA264_12930 are separated by 106 nucleotidesCA264_12930 and CA264_12935 are separated by 47 nucleotides CA264_12920: CA264_12920 - N-acetylmuramoyl-L-alanine amidase, at 3,012,896 to 3,013,531 _12920 CA264_12925: CA264_12925 - hypothetical protein, at 3,013,620 to 3,014,410 _12925 CA264_12930: CA264_12930 - cell wall hydrolase, at 3,014,517 to 3,015,518 _12930 CA264_12935: CA264_12935 - serine hydrolase, at 3,015,566 to 3,016,486 _12935 Position (kb) 3014 3015 3016Strain fitness (log2 ratio) -2 -1 0 1at 3014.060 kb on + strand, within CA264_12925at 3014.290 kb on - strand, within CA264_12925at 3014.455 kb on + strandat 3014.490 kb on + strandat 3014.491 kb on - strandat 3014.519 kb on - strandat 3014.539 kb on + strandat 3014.540 kb on - strandat 3014.599 kb on - strandat 3014.680 kb on + strand, within CA264_12930at 3014.680 kb on + strand, within CA264_12930at 3014.703 kb on - strand, within CA264_12930at 3014.826 kb on - strand, within CA264_12930at 3014.832 kb on + strand, within CA264_12930at 3014.832 kb on + strand, within CA264_12930at 3014.832 kb on + strand, within CA264_12930at 3014.878 kb on + strand, within CA264_12930at 3014.879 kb on - strand, within CA264_12930at 3014.975 kb on + strand, within CA264_12930at 3014.975 kb on + strand, within CA264_12930at 3014.976 kb on - strand, within CA264_12930at 3014.981 kb on - strand, within CA264_12930at 3014.981 kb on - strand, within CA264_12930at 3015.036 kb on + strand, within CA264_12930at 3015.142 kb on + strand, within CA264_12930at 3015.142 kb on + strand, within CA264_12930at 3015.249 kb on + strand, within CA264_12930at 3015.252 kb on - strand, within CA264_12930at 3015.471 kb on + strandat 3015.471 kb on + strandat 3015.479 kb on + strandat 3015.481 kb on + strandat 3015.482 kb on - strandat 3015.508 kb on - strandat 3015.536 kb on - strandat 3015.537 kb on + strandat 3015.542 kb on + strandat 3015.542 kb on + strandat 3015.543 kb on - strandat 3015.563 kb on - strandat 3015.567 kb on + strandat 3015.567 kb on + strandat 3015.567 kb on + strandat 3015.568 kb on - strandat 3015.587 kb on + strandat 3015.587 kb on + strandat 3015.587 kb on + strandat 3015.588 kb on - strandat 3015.592 kb on - strandat 3015.592 kb on - strandat 3015.690 kb on + strand, within CA264_12935at 3015.715 kb on - strand, within CA264_12935at 3015.811 kb on + strand, within CA264_12935at 3016.117 kb on + strand, within CA264_12935at 3016.169 kb on + strand, within CA264_12935at 3016.169 kb on + strand, within CA264_12935at 3016.170 kb on - strand, within CA264_12935at 3016.185 kb on - strand, within CA264_12935at 3016.400 kb on + strandat 3016.487 kb on - strandat 3016.491 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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3,014,060 + CA264_12925 0.56 +1.2
3,014,290 - CA264_12925 0.85 +0.3
3,014,455 + -0.4
3,014,490 + -0.4
3,014,491 - -0.1
3,014,519 - -0.1
3,014,539 + -0.4
3,014,540 - -0.0
3,014,599 - +1.2
3,014,680 + CA264_12930 0.16 +1.0
3,014,680 + CA264_12930 0.16 -0.3
3,014,703 - CA264_12930 0.19 +0.2
3,014,826 - CA264_12930 0.31 -1.3
3,014,832 + CA264_12930 0.31 -0.0
3,014,832 + CA264_12930 0.31 -1.9
3,014,832 + CA264_12930 0.31 -0.4
3,014,878 + CA264_12930 0.36 -0.9
3,014,879 - CA264_12930 0.36 -1.5
3,014,975 + CA264_12930 0.46 -0.1
3,014,975 + CA264_12930 0.46 -0.6
3,014,976 - CA264_12930 0.46 -0.2
3,014,981 - CA264_12930 0.46 -0.2
3,014,981 - CA264_12930 0.46 +0.3
3,015,036 + CA264_12930 0.52 -0.9
3,015,142 + CA264_12930 0.62 +1.0
3,015,142 + CA264_12930 0.62 +0.9
3,015,249 + CA264_12930 0.73 +0.2
3,015,252 - CA264_12930 0.73 -0.0
3,015,471 + +1.1
3,015,471 + +0.2
3,015,479 + -0.9
3,015,481 + +0.5
3,015,482 - +0.3
3,015,508 - -0.7
3,015,536 - +0.6
3,015,537 + +0.8
3,015,542 + +0.3
3,015,542 + +0.3
3,015,543 - -0.5
3,015,563 - -0.2
3,015,567 + +0.7
3,015,567 + -1.5
3,015,567 + -1.0
3,015,568 - +0.0
3,015,587 + -1.4
3,015,587 + +0.6
3,015,587 + -0.2
3,015,588 - +0.4
3,015,592 - +0.3
3,015,592 - +0.1
3,015,690 + CA264_12935 0.13 +1.1
3,015,715 - CA264_12935 0.16 +1.7
3,015,811 + CA264_12935 0.27 +0.4
3,016,117 + CA264_12935 0.60 -0.5
3,016,169 + CA264_12935 0.65 +0.6
3,016,169 + CA264_12935 0.65 +0.2
3,016,170 - CA264_12935 0.66 -0.5
3,016,185 - CA264_12935 0.67 -0.3
3,016,400 + -0.9
3,016,487 - +0.2
3,016,491 - +0.3

Or see this region's nucleotide sequence