Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10870

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10860 and CA264_10865 are separated by 28 nucleotidesCA264_10865 and CA264_10870 overlap by 1 nucleotidesCA264_10870 and CA264_10875 are separated by 696 nucleotides CA264_10860: CA264_10860 - hypothetical protein, at 2,511,606 to 2,512,037 _10860 CA264_10865: CA264_10865 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase, at 2,512,066 to 2,512,986 _10865 CA264_10870: CA264_10870 - division/cell wall cluster transcriptional repressor MraZ, at 2,512,986 to 2,513,453 _10870 CA264_10875: CA264_10875 - MerP protein, at 2,514,150 to 2,514,476 _10875 Position (kb) 2512 2513 2514Strain fitness (log2 ratio) -3 -2 -1 0 1at 2512.024 kb on - strandat 2512.057 kb on + strandat 2512.058 kb on - strandat 2512.067 kb on + strandat 2512.916 kb on + strandat 2512.980 kb on - strandat 2512.987 kb on + strandat 2512.989 kb on + strandat 2513.077 kb on + strand, within CA264_10870at 2513.082 kb on - strand, within CA264_10870at 2513.101 kb on - strand, within CA264_10870at 2513.174 kb on + strand, within CA264_10870at 2513.174 kb on + strand, within CA264_10870at 2513.432 kb on - strandat 2513.476 kb on + strandat 2513.477 kb on - strandat 2513.492 kb on + strandat 2513.492 kb on + strandat 2513.561 kb on + strandat 2513.561 kb on + strandat 2513.653 kb on - strandat 2513.732 kb on + strandat 2513.732 kb on + strandat 2513.796 kb on - strandat 2513.882 kb on - strandat 2513.907 kb on + strandat 2513.909 kb on + strandat 2513.909 kb on + strandat 2513.909 kb on + strandat 2514.031 kb on - strandat 2514.032 kb on + strandat 2514.033 kb on - strandat 2514.099 kb on - strandat 2514.130 kb on + strandat 2514.172 kb on + strandat 2514.173 kb on - strandat 2514.173 kb on - strandat 2514.290 kb on + strand, within CA264_10875at 2514.409 kb on + strand, within CA264_10875

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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2,512,024 - -1.5
2,512,057 + -1.4
2,512,058 - -1.8
2,512,067 + -1.4
2,512,916 + -0.7
2,512,980 - -1.1
2,512,987 + +0.1
2,512,989 + +1.4
2,513,077 + CA264_10870 0.19 -0.1
2,513,082 - CA264_10870 0.21 -1.1
2,513,101 - CA264_10870 0.25 -0.7
2,513,174 + CA264_10870 0.40 -0.7
2,513,174 + CA264_10870 0.40 -1.5
2,513,432 - -1.0
2,513,476 + -1.0
2,513,477 - +0.6
2,513,492 + -0.5
2,513,492 + -2.4
2,513,561 + -0.1
2,513,561 + +0.2
2,513,653 - -1.5
2,513,732 + +1.0
2,513,732 + -2.8
2,513,796 - -0.6
2,513,882 - -0.8
2,513,907 + +0.3
2,513,909 + -0.3
2,513,909 + +0.1
2,513,909 + +0.8
2,514,031 - -1.7
2,514,032 + -0.0
2,514,033 - -0.1
2,514,099 - -0.4
2,514,130 + +1.5
2,514,172 + +0.2
2,514,173 - -0.9
2,514,173 - +0.1
2,514,290 + CA264_10875 0.43 +0.5
2,514,409 + CA264_10875 0.79 +0.0

Or see this region's nucleotide sequence