Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10055

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10045 and CA264_10050 are separated by 420 nucleotidesCA264_10050 and CA264_10055 are separated by 53 nucleotidesCA264_10055 and CA264_10060 are separated by 35 nucleotidesCA264_10060 and CA264_10065 overlap by 32 nucleotides CA264_10045: CA264_10045 - hypothetical protein, at 2,332,203 to 2,332,505 _10045 CA264_10050: CA264_10050 - hypothetical protein, at 2,332,926 to 2,333,354 _10050 CA264_10055: CA264_10055 - hypothetical protein, at 2,333,408 to 2,334,052 _10055 CA264_10060: CA264_10060 - two-component sensor histidine kinase, at 2,334,088 to 2,334,921 _10060 CA264_10065: CA264_10065 - DNA-binding response regulator, at 2,334,890 to 2,335,522 _10065 Position (kb) 2333 2334 2335Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2332.440 kb on + strand, within CA264_10045at 2332.440 kb on + strand, within CA264_10045at 2332.878 kb on + strandat 2332.878 kb on + strandat 2332.881 kb on + strandat 2332.881 kb on + strandat 2332.897 kb on - strandat 2332.901 kb on - strandat 2332.925 kb on + strandat 2332.926 kb on - strandat 2333.064 kb on - strand, within CA264_10050at 2333.064 kb on - strand, within CA264_10050at 2333.069 kb on - strand, within CA264_10050at 2333.069 kb on - strand, within CA264_10050at 2333.185 kb on - strand, within CA264_10050at 2333.187 kb on + strand, within CA264_10050at 2333.187 kb on + strand, within CA264_10050at 2333.188 kb on - strand, within CA264_10050at 2333.192 kb on + strand, within CA264_10050at 2333.315 kb on + strandat 2333.315 kb on + strandat 2333.395 kb on + strandat 2333.395 kb on + strandat 2333.407 kb on + strandat 2333.407 kb on + strandat 2333.407 kb on + strandat 2333.407 kb on + strandat 2333.407 kb on + strandat 2333.408 kb on - strandat 2333.416 kb on + strandat 2333.541 kb on - strand, within CA264_10055at 2333.586 kb on - strand, within CA264_10055at 2333.697 kb on + strand, within CA264_10055at 2333.747 kb on + strand, within CA264_10055at 2333.761 kb on + strand, within CA264_10055at 2333.761 kb on + strand, within CA264_10055at 2333.761 kb on + strand, within CA264_10055at 2333.791 kb on + strand, within CA264_10055at 2333.795 kb on + strand, within CA264_10055at 2333.799 kb on - strand, within CA264_10055at 2333.799 kb on - strand, within CA264_10055at 2333.801 kb on + strand, within CA264_10055at 2333.802 kb on - strand, within CA264_10055at 2333.802 kb on - strand, within CA264_10055at 2333.802 kb on - strand, within CA264_10055at 2333.802 kb on - strand, within CA264_10055at 2333.806 kb on + strand, within CA264_10055at 2333.809 kb on - strand, within CA264_10055at 2333.809 kb on - strand, within CA264_10055at 2333.890 kb on + strand, within CA264_10055at 2333.918 kb on - strand, within CA264_10055at 2333.918 kb on - strand, within CA264_10055at 2333.956 kb on - strand, within CA264_10055at 2333.960 kb on + strand, within CA264_10055at 2333.961 kb on - strand, within CA264_10055at 2333.995 kb on + strandat 2334.050 kb on + strandat 2334.168 kb on + strandat 2334.168 kb on + strandat 2334.327 kb on + strand, within CA264_10060at 2334.351 kb on - strand, within CA264_10060at 2334.355 kb on - strand, within CA264_10060at 2334.531 kb on - strand, within CA264_10060at 2334.569 kb on + strand, within CA264_10060at 2334.569 kb on + strand, within CA264_10060at 2334.570 kb on - strand, within CA264_10060at 2334.670 kb on + strand, within CA264_10060at 2334.860 kb on + strandat 2334.860 kb on + strandat 2334.861 kb on - strandat 2334.869 kb on - strandat 2334.883 kb on - strandat 2334.883 kb on - strandat 2334.889 kb on + strandat 2334.890 kb on - strandat 2334.975 kb on - strand, within CA264_10065at 2334.976 kb on + strand, within CA264_10065at 2334.976 kb on + strand, within CA264_10065at 2334.977 kb on - strand, within CA264_10065at 2334.977 kb on - strand, within CA264_10065at 2335.012 kb on + strand, within CA264_10065

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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2,332,440 + CA264_10045 0.78 -0.3
2,332,440 + CA264_10045 0.78 +1.1
2,332,878 + -1.4
2,332,878 + -0.0
2,332,881 + +0.3
2,332,881 + -0.8
2,332,897 - -1.4
2,332,901 - -1.2
2,332,925 + -0.3
2,332,926 - -1.4
2,333,064 - CA264_10050 0.32 +0.8
2,333,064 - CA264_10050 0.32 +1.0
2,333,069 - CA264_10050 0.33 -0.5
2,333,069 - CA264_10050 0.33 -1.5
2,333,185 - CA264_10050 0.60 -0.7
2,333,187 + CA264_10050 0.61 +0.6
2,333,187 + CA264_10050 0.61 +0.3
2,333,188 - CA264_10050 0.61 +1.8
2,333,192 + CA264_10050 0.62 -0.8
2,333,315 + +0.0
2,333,315 + -0.3
2,333,395 + +0.7
2,333,395 + +0.1
2,333,407 + -0.6
2,333,407 + +0.8
2,333,407 + -0.1
2,333,407 + +0.2
2,333,407 + +0.1
2,333,408 - -0.3
2,333,416 + +0.2
2,333,541 - CA264_10055 0.21 +0.0
2,333,586 - CA264_10055 0.28 -0.1
2,333,697 + CA264_10055 0.45 +0.0
2,333,747 + CA264_10055 0.53 -0.6
2,333,761 + CA264_10055 0.55 -0.9
2,333,761 + CA264_10055 0.55 +0.4
2,333,761 + CA264_10055 0.55 -0.9
2,333,791 + CA264_10055 0.59 -0.6
2,333,795 + CA264_10055 0.60 -0.2
2,333,799 - CA264_10055 0.61 +0.2
2,333,799 - CA264_10055 0.61 -0.3
2,333,801 + CA264_10055 0.61 -0.8
2,333,802 - CA264_10055 0.61 -0.1
2,333,802 - CA264_10055 0.61 -1.0
2,333,802 - CA264_10055 0.61 +0.8
2,333,802 - CA264_10055 0.61 +0.7
2,333,806 + CA264_10055 0.62 -1.0
2,333,809 - CA264_10055 0.62 -1.0
2,333,809 - CA264_10055 0.62 -0.8
2,333,890 + CA264_10055 0.75 +0.1
2,333,918 - CA264_10055 0.79 +0.4
2,333,918 - CA264_10055 0.79 +0.4
2,333,956 - CA264_10055 0.85 -0.5
2,333,960 + CA264_10055 0.86 -1.9
2,333,961 - CA264_10055 0.86 -2.9
2,333,995 + -0.0
2,334,050 + -0.3
2,334,168 + +0.3
2,334,168 + -0.9
2,334,327 + CA264_10060 0.29 -1.7
2,334,351 - CA264_10060 0.32 -1.1
2,334,355 - CA264_10060 0.32 -0.2
2,334,531 - CA264_10060 0.53 +0.2
2,334,569 + CA264_10060 0.58 +0.3
2,334,569 + CA264_10060 0.58 -0.3
2,334,570 - CA264_10060 0.58 -0.0
2,334,670 + CA264_10060 0.70 +0.1
2,334,860 + -1.0
2,334,860 + -1.3
2,334,861 - +0.3
2,334,869 - +0.5
2,334,883 - -0.9
2,334,883 - -0.2
2,334,889 + -0.1
2,334,890 - -0.2
2,334,975 - CA264_10065 0.13 -0.1
2,334,976 + CA264_10065 0.14 -1.3
2,334,976 + CA264_10065 0.14 -0.1
2,334,977 - CA264_10065 0.14 +0.1
2,334,977 - CA264_10065 0.14 -1.0
2,335,012 + CA264_10065 0.19 +1.3

Or see this region's nucleotide sequence