Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08085

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08080 and CA264_08085 are separated by 98 nucleotidesCA264_08085 and CA264_08090 are separated by 189 nucleotides CA264_08080: CA264_08080 - gliding motility-associated ABC transporter ATP-binding subunit GldA, at 1,866,176 to 1,867,090 _08080 CA264_08085: CA264_08085 - short-chain dehydrogenase, at 1,867,189 to 1,867,893 _08085 CA264_08090: CA264_08090 - short-chain dehydrogenase, at 1,868,083 to 1,868,790 _08090 Position (kb) 1867 1868Strain fitness (log2 ratio) -2 -1 0 1 2at 1866.808 kb on - strand, within CA264_08080at 1866.819 kb on + strand, within CA264_08080at 1866.819 kb on + strand, within CA264_08080at 1866.819 kb on + strand, within CA264_08080at 1866.820 kb on - strand, within CA264_08080at 1866.820 kb on - strand, within CA264_08080at 1866.820 kb on - strand, within CA264_08080at 1866.820 kb on - strand, within CA264_08080at 1866.820 kb on - strand, within CA264_08080at 1866.820 kb on - strand, within CA264_08080at 1866.820 kb on - strand, within CA264_08080at 1866.820 kb on - strand, within CA264_08080at 1866.823 kb on + strand, within CA264_08080at 1867.077 kb on - strandat 1867.093 kb on - strandat 1867.093 kb on - strandat 1867.093 kb on - strandat 1867.093 kb on - strandat 1867.094 kb on + strandat 1867.095 kb on - strandat 1867.097 kb on + strandat 1867.098 kb on - strandat 1867.106 kb on + strandat 1867.107 kb on - strandat 1867.120 kb on + strandat 1867.121 kb on - strandat 1867.187 kb on - strandat 1867.190 kb on + strandat 1867.191 kb on - strandat 1867.233 kb on + strandat 1867.333 kb on + strand, within CA264_08085at 1867.334 kb on - strand, within CA264_08085at 1867.381 kb on + strand, within CA264_08085at 1867.495 kb on - strand, within CA264_08085at 1867.512 kb on + strand, within CA264_08085at 1867.658 kb on - strand, within CA264_08085at 1867.851 kb on + strandat 1867.854 kb on + strandat 1867.952 kb on + strandat 1867.986 kb on + strandat 1867.987 kb on - strandat 1867.987 kb on - strandat 1867.995 kb on + strandat 1868.046 kb on - strandat 1868.071 kb on + strandat 1868.078 kb on - strandat 1868.078 kb on - strandat 1868.085 kb on - strandat 1868.085 kb on - strandat 1868.249 kb on - strand, within CA264_08090at 1868.249 kb on - strand, within CA264_08090at 1868.333 kb on + strand, within CA264_08090at 1868.347 kb on - strand, within CA264_08090at 1868.349 kb on + strand, within CA264_08090at 1868.349 kb on + strand, within CA264_08090at 1868.351 kb on + strand, within CA264_08090at 1868.351 kb on + strand, within CA264_08090at 1868.352 kb on - strand, within CA264_08090at 1868.352 kb on - strand, within CA264_08090at 1868.362 kb on - strand, within CA264_08090at 1868.362 kb on - strand, within CA264_08090at 1868.383 kb on - strand, within CA264_08090at 1868.388 kb on + strand, within CA264_08090at 1868.437 kb on - strand, within CA264_08090at 1868.438 kb on + strand, within CA264_08090at 1868.438 kb on + strand, within CA264_08090at 1868.438 kb on + strand, within CA264_08090at 1868.439 kb on - strand, within CA264_08090at 1868.439 kb on - strand, within CA264_08090at 1868.442 kb on - strand, within CA264_08090at 1868.546 kb on - strand, within CA264_08090at 1868.570 kb on + strand, within CA264_08090at 1868.570 kb on + strand, within CA264_08090at 1868.570 kb on + strand, within CA264_08090at 1868.570 kb on + strand, within CA264_08090at 1868.570 kb on + strand, within CA264_08090at 1868.571 kb on - strand, within CA264_08090at 1868.643 kb on - strand, within CA264_08090at 1868.643 kb on - strand, within CA264_08090at 1868.643 kb on - strand, within CA264_08090at 1868.703 kb on + strand, within CA264_08090at 1868.706 kb on + strand, within CA264_08090at 1868.706 kb on + strand, within CA264_08090at 1868.706 kb on + strand, within CA264_08090at 1868.707 kb on - strand, within CA264_08090at 1868.735 kb on - strandat 1868.781 kb on - strandat 1868.781 kb on - strandat 1868.791 kb on - strandat 1868.791 kb on - strandat 1868.791 kb on - strandat 1868.806 kb on - strandat 1868.829 kb on - strandat 1868.829 kb on - strandat 1868.829 kb on - strandat 1868.832 kb on - strandat 1868.832 kb on - strandat 1868.837 kb on + strandat 1868.837 kb on + strandat 1868.841 kb on + strandat 1868.870 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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1,866,808 - CA264_08080 0.69 -0.9
1,866,819 + CA264_08080 0.70 +1.0
1,866,819 + CA264_08080 0.70 -0.3
1,866,819 + CA264_08080 0.70 -0.5
1,866,820 - CA264_08080 0.70 +1.1
1,866,820 - CA264_08080 0.70 -1.9
1,866,820 - CA264_08080 0.70 -1.1
1,866,820 - CA264_08080 0.70 -0.3
1,866,820 - CA264_08080 0.70 -2.2
1,866,820 - CA264_08080 0.70 -1.0
1,866,820 - CA264_08080 0.70 -1.5
1,866,820 - CA264_08080 0.70 -2.1
1,866,823 + CA264_08080 0.71 -1.0
1,867,077 - +0.1
1,867,093 - -0.4
1,867,093 - +0.2
1,867,093 - +1.1
1,867,093 - +0.9
1,867,094 + -0.1
1,867,095 - -1.5
1,867,097 + +0.7
1,867,098 - +0.2
1,867,106 + -1.4
1,867,107 - -0.2
1,867,120 + -0.7
1,867,121 - +2.5
1,867,187 - +0.1
1,867,190 + -0.2
1,867,191 - +0.5
1,867,233 + +1.3
1,867,333 + CA264_08085 0.20 -0.5
1,867,334 - CA264_08085 0.21 +0.1
1,867,381 + CA264_08085 0.27 +0.9
1,867,495 - CA264_08085 0.43 -0.0
1,867,512 + CA264_08085 0.46 -1.7
1,867,658 - CA264_08085 0.67 -1.0
1,867,851 + -0.4
1,867,854 + -1.4
1,867,952 + -1.2
1,867,986 + -1.9
1,867,987 - +1.9
1,867,987 - -0.4
1,867,995 + +0.9
1,868,046 - +0.5
1,868,071 + -1.5
1,868,078 - -1.9
1,868,078 - -0.2
1,868,085 - -0.2
1,868,085 - +0.1
1,868,249 - CA264_08090 0.23 -2.1
1,868,249 - CA264_08090 0.23 -1.2
1,868,333 + CA264_08090 0.35 -0.9
1,868,347 - CA264_08090 0.37 +0.3
1,868,349 + CA264_08090 0.38 -0.7
1,868,349 + CA264_08090 0.38 +0.0
1,868,351 + CA264_08090 0.38 -0.7
1,868,351 + CA264_08090 0.38 -1.2
1,868,352 - CA264_08090 0.38 -0.1
1,868,352 - CA264_08090 0.38 -1.4
1,868,362 - CA264_08090 0.39 -1.4
1,868,362 - CA264_08090 0.39 -1.2
1,868,383 - CA264_08090 0.42 -1.4
1,868,388 + CA264_08090 0.43 -1.4
1,868,437 - CA264_08090 0.50 +0.5
1,868,438 + CA264_08090 0.50 -2.2
1,868,438 + CA264_08090 0.50 +1.0
1,868,438 + CA264_08090 0.50 -1.4
1,868,439 - CA264_08090 0.50 -1.7
1,868,439 - CA264_08090 0.50 -1.2
1,868,442 - CA264_08090 0.51 -1.1
1,868,546 - CA264_08090 0.65 -0.9
1,868,570 + CA264_08090 0.69 -0.1
1,868,570 + CA264_08090 0.69 -1.6
1,868,570 + CA264_08090 0.69 -1.0
1,868,570 + CA264_08090 0.69 -0.9
1,868,570 + CA264_08090 0.69 -0.8
1,868,571 - CA264_08090 0.69 -1.5
1,868,643 - CA264_08090 0.79 -1.0
1,868,643 - CA264_08090 0.79 -0.3
1,868,643 - CA264_08090 0.79 -1.5
1,868,703 + CA264_08090 0.88 -0.9
1,868,706 + CA264_08090 0.88 -0.3
1,868,706 + CA264_08090 0.88 +0.4
1,868,706 + CA264_08090 0.88 -1.5
1,868,707 - CA264_08090 0.88 -1.9
1,868,735 - -1.2
1,868,781 - -1.2
1,868,781 - -1.5
1,868,791 - -0.5
1,868,791 - -2.1
1,868,791 - -1.2
1,868,806 - +1.4
1,868,829 - -1.5
1,868,829 - -0.5
1,868,829 - +0.0
1,868,832 - +0.9
1,868,832 - -0.2
1,868,837 + -0.5
1,868,837 + -0.0
1,868,841 + +0.2
1,868,870 - -0.2

Or see this region's nucleotide sequence