Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06155

Experiment: m.b. Cisplatin 0.025 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_06145 and CA264_06150 overlap by 9 nucleotidesCA264_06150 and CA264_06155 are separated by 15 nucleotidesCA264_06155 and CA264_06160 are separated by 317 nucleotidesCA264_06160 and CA264_06165 are separated by 274 nucleotides CA264_06145: CA264_06145 - DNA protecting protein DprA, at 1,435,509 to 1,436,624 _06145 CA264_06150: CA264_06150 - hypothetical protein, at 1,436,616 to 1,437,560 _06150 CA264_06155: CA264_06155 - cation diffusion facilitator family transporter, at 1,437,576 to 1,438,562 _06155 CA264_06160: CA264_06160 - hypothetical protein, at 1,438,880 to 1,439,170 _06160 CA264_06165: CA264_06165 - hypothetical protein, at 1,439,445 to 1,439,876 _06165 Position (kb) 1437 1438 1439Strain fitness (log2 ratio) -2 -1 0 1 2at 1436.612 kb on + strandat 1436.613 kb on - strandat 1436.617 kb on + strandat 1436.617 kb on + strandat 1436.618 kb on - strandat 1436.653 kb on + strandat 1436.653 kb on + strandat 1436.709 kb on - strandat 1436.718 kb on - strand, within CA264_06150at 1436.765 kb on + strand, within CA264_06150at 1436.787 kb on + strand, within CA264_06150at 1436.866 kb on - strand, within CA264_06150at 1436.899 kb on - strand, within CA264_06150at 1436.948 kb on + strand, within CA264_06150at 1436.948 kb on + strand, within CA264_06150at 1436.949 kb on - strand, within CA264_06150at 1436.949 kb on - strand, within CA264_06150at 1437.110 kb on - strand, within CA264_06150at 1437.155 kb on + strand, within CA264_06150at 1437.155 kb on + strand, within CA264_06150at 1437.155 kb on + strand, within CA264_06150at 1437.155 kb on + strand, within CA264_06150at 1437.156 kb on - strand, within CA264_06150at 1437.160 kb on + strand, within CA264_06150at 1437.161 kb on - strand, within CA264_06150at 1437.161 kb on - strand, within CA264_06150at 1437.209 kb on - strand, within CA264_06150at 1437.213 kb on + strand, within CA264_06150at 1437.213 kb on + strand, within CA264_06150at 1437.213 kb on + strand, within CA264_06150at 1437.214 kb on - strand, within CA264_06150at 1437.223 kb on - strand, within CA264_06150at 1437.223 kb on - strand, within CA264_06150at 1437.264 kb on - strand, within CA264_06150at 1437.508 kb on + strandat 1437.508 kb on + strandat 1437.539 kb on + strandat 1437.539 kb on + strandat 1437.539 kb on + strandat 1437.539 kb on + strandat 1437.540 kb on - strandat 1437.543 kb on + strandat 1437.544 kb on - strandat 1437.577 kb on + strandat 1437.606 kb on + strandat 1437.606 kb on + strandat 1437.607 kb on - strandat 1437.607 kb on - strandat 1437.607 kb on - strandat 1437.710 kb on + strand, within CA264_06155at 1437.727 kb on - strand, within CA264_06155at 1437.727 kb on - strand, within CA264_06155at 1437.727 kb on - strand, within CA264_06155at 1437.727 kb on - strand, within CA264_06155at 1437.753 kb on + strand, within CA264_06155at 1437.772 kb on - strand, within CA264_06155at 1437.772 kb on - strand, within CA264_06155at 1437.847 kb on + strand, within CA264_06155at 1437.848 kb on - strand, within CA264_06155at 1437.917 kb on + strand, within CA264_06155at 1437.935 kb on - strand, within CA264_06155at 1438.002 kb on + strand, within CA264_06155at 1438.054 kb on + strand, within CA264_06155at 1438.055 kb on - strand, within CA264_06155at 1438.183 kb on + strand, within CA264_06155at 1438.184 kb on - strand, within CA264_06155at 1438.184 kb on - strand, within CA264_06155at 1438.184 kb on - strand, within CA264_06155at 1438.191 kb on - strand, within CA264_06155at 1438.217 kb on + strand, within CA264_06155at 1438.218 kb on - strand, within CA264_06155at 1438.277 kb on + strand, within CA264_06155at 1438.319 kb on + strand, within CA264_06155at 1438.320 kb on - strand, within CA264_06155at 1438.396 kb on + strand, within CA264_06155at 1438.425 kb on + strand, within CA264_06155at 1438.425 kb on + strand, within CA264_06155at 1438.426 kb on - strand, within CA264_06155at 1438.448 kb on + strand, within CA264_06155at 1438.448 kb on + strand, within CA264_06155at 1438.452 kb on + strand, within CA264_06155at 1438.453 kb on - strand, within CA264_06155at 1438.469 kb on + strandat 1438.470 kb on - strandat 1438.470 kb on - strandat 1438.470 kb on - strandat 1438.512 kb on + strandat 1438.545 kb on - strandat 1438.561 kb on - strandat 1438.630 kb on + strandat 1438.631 kb on - strandat 1438.675 kb on + strandat 1438.675 kb on + strandat 1438.676 kb on - strandat 1438.676 kb on - strandat 1438.688 kb on + strandat 1438.689 kb on - strandat 1438.744 kb on - strandat 1438.763 kb on + strandat 1438.867 kb on + strandat 1438.867 kb on + strandat 1438.867 kb on + strandat 1438.871 kb on + strandat 1438.871 kb on + strandat 1438.872 kb on - strandat 1438.872 kb on - strandat 1438.873 kb on + strandat 1438.873 kb on + strandat 1438.873 kb on + strandat 1438.874 kb on - strandat 1438.874 kb on - strandat 1438.967 kb on + strand, within CA264_06160at 1439.008 kb on - strand, within CA264_06160at 1439.016 kb on + strand, within CA264_06160at 1439.017 kb on - strand, within CA264_06160at 1439.017 kb on - strand, within CA264_06160at 1439.017 kb on - strand, within CA264_06160at 1439.176 kb on + strandat 1439.194 kb on + strandat 1439.194 kb on + strandat 1439.195 kb on - strandat 1439.226 kb on + strandat 1439.231 kb on - strandat 1439.231 kb on - strandat 1439.261 kb on + strandat 1439.306 kb on + strandat 1439.378 kb on + strandat 1439.378 kb on + strandat 1439.379 kb on - strandat 1439.383 kb on + strandat 1439.402 kb on + strandat 1439.403 kb on - strandat 1439.407 kb on - strandat 1439.407 kb on - strandat 1439.407 kb on - strandat 1439.407 kb on - strandat 1439.407 kb on - strandat 1439.426 kb on + strandat 1439.544 kb on - strand, within CA264_06165at 1439.555 kb on + strand, within CA264_06165at 1439.561 kb on + strand, within CA264_06165at 1439.561 kb on + strand, within CA264_06165

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
remove
1,436,612 + +0.4
1,436,613 - -0.3
1,436,617 + -0.5
1,436,617 + -0.8
1,436,618 - +0.9
1,436,653 + +0.6
1,436,653 + -0.1
1,436,709 - -1.6
1,436,718 - CA264_06150 0.11 +0.1
1,436,765 + CA264_06150 0.16 +1.1
1,436,787 + CA264_06150 0.18 +0.5
1,436,866 - CA264_06150 0.26 -0.7
1,436,899 - CA264_06150 0.30 -0.0
1,436,948 + CA264_06150 0.35 +0.1
1,436,948 + CA264_06150 0.35 -1.2
1,436,949 - CA264_06150 0.35 +0.2
1,436,949 - CA264_06150 0.35 -0.4
1,437,110 - CA264_06150 0.52 +0.9
1,437,155 + CA264_06150 0.57 +0.5
1,437,155 + CA264_06150 0.57 -0.2
1,437,155 + CA264_06150 0.57 -0.0
1,437,155 + CA264_06150 0.57 -0.7
1,437,156 - CA264_06150 0.57 -0.5
1,437,160 + CA264_06150 0.58 +0.6
1,437,161 - CA264_06150 0.58 +0.9
1,437,161 - CA264_06150 0.58 +0.1
1,437,209 - CA264_06150 0.63 +0.4
1,437,213 + CA264_06150 0.63 -0.6
1,437,213 + CA264_06150 0.63 -0.3
1,437,213 + CA264_06150 0.63 -0.3
1,437,214 - CA264_06150 0.63 -0.9
1,437,223 - CA264_06150 0.64 +0.2
1,437,223 - CA264_06150 0.64 -0.4
1,437,264 - CA264_06150 0.69 -0.4
1,437,508 + +0.2
1,437,508 + +1.7
1,437,539 + -1.4
1,437,539 + -2.0
1,437,539 + -0.1
1,437,539 + -0.6
1,437,540 - -1.4
1,437,543 + +0.2
1,437,544 - -0.4
1,437,577 + -0.2
1,437,606 + -0.7
1,437,606 + +1.5
1,437,607 - -0.1
1,437,607 - -1.5
1,437,607 - +0.6
1,437,710 + CA264_06155 0.14 -0.5
1,437,727 - CA264_06155 0.15 +0.1
1,437,727 - CA264_06155 0.15 -0.6
1,437,727 - CA264_06155 0.15 -0.4
1,437,727 - CA264_06155 0.15 -0.6
1,437,753 + CA264_06155 0.18 +0.8
1,437,772 - CA264_06155 0.20 -0.1
1,437,772 - CA264_06155 0.20 -0.8
1,437,847 + CA264_06155 0.27 +0.9
1,437,848 - CA264_06155 0.28 -0.4
1,437,917 + CA264_06155 0.35 -0.2
1,437,935 - CA264_06155 0.36 -0.1
1,438,002 + CA264_06155 0.43 -0.4
1,438,054 + CA264_06155 0.48 -0.2
1,438,055 - CA264_06155 0.49 -0.5
1,438,183 + CA264_06155 0.61 +0.4
1,438,184 - CA264_06155 0.62 +0.6
1,438,184 - CA264_06155 0.62 +0.5
1,438,184 - CA264_06155 0.62 -1.3
1,438,191 - CA264_06155 0.62 -1.8
1,438,217 + CA264_06155 0.65 +0.5
1,438,218 - CA264_06155 0.65 -0.1
1,438,277 + CA264_06155 0.71 -1.7
1,438,319 + CA264_06155 0.75 -1.7
1,438,320 - CA264_06155 0.75 +0.4
1,438,396 + CA264_06155 0.83 +0.1
1,438,425 + CA264_06155 0.86 +0.5
1,438,425 + CA264_06155 0.86 +0.2
1,438,426 - CA264_06155 0.86 -0.3
1,438,448 + CA264_06155 0.88 -0.4
1,438,448 + CA264_06155 0.88 -0.0
1,438,452 + CA264_06155 0.89 +0.9
1,438,453 - CA264_06155 0.89 +0.2
1,438,469 + -0.2
1,438,470 - -0.7
1,438,470 - +0.4
1,438,470 - -1.8
1,438,512 + -0.3
1,438,545 - +0.5
1,438,561 - -0.4
1,438,630 + -0.3
1,438,631 - +0.7
1,438,675 + +0.6
1,438,675 + -0.3
1,438,676 - -0.9
1,438,676 - -0.5
1,438,688 + -0.6
1,438,689 - +0.5
1,438,744 - +0.2
1,438,763 + +0.4
1,438,867 + +1.0
1,438,867 + +0.3
1,438,867 + -0.0
1,438,871 + +2.5
1,438,871 + -0.4
1,438,872 - -1.1
1,438,872 - -0.3
1,438,873 + -0.2
1,438,873 + +0.0
1,438,873 + -2.2
1,438,874 - -0.8
1,438,874 - -0.7
1,438,967 + CA264_06160 0.30 -0.6
1,439,008 - CA264_06160 0.44 +0.2
1,439,016 + CA264_06160 0.47 +0.1
1,439,017 - CA264_06160 0.47 -1.0
1,439,017 - CA264_06160 0.47 +2.5
1,439,017 - CA264_06160 0.47 +1.2
1,439,176 + +0.3
1,439,194 + -0.4
1,439,194 + +0.1
1,439,195 - -1.0
1,439,226 + -0.3
1,439,231 - +0.5
1,439,231 - -1.2
1,439,261 + -0.2
1,439,306 + +1.6
1,439,378 + +0.7
1,439,378 + +1.1
1,439,379 - -0.2
1,439,383 + -0.2
1,439,402 + +1.7
1,439,403 - -1.4
1,439,407 - -0.3
1,439,407 - +0.8
1,439,407 - +0.2
1,439,407 - -0.5
1,439,407 - +0.6
1,439,426 + -0.5
1,439,544 - CA264_06165 0.23 +0.2
1,439,555 + CA264_06165 0.25 -0.1
1,439,561 + CA264_06165 0.27 -0.7
1,439,561 + CA264_06165 0.27 -0.1

Or see this region's nucleotide sequence