Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05530

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05525 and CA264_05530 are separated by 246 nucleotidesCA264_05530 and CA264_05535 are separated by 327 nucleotides CA264_05525: CA264_05525 - oxidoreductase, at 1,282,733 to 1,283,794 _05525 CA264_05530: CA264_05530 - phosphoenolpyruvate carboxylase, at 1,284,041 to 1,286,626 _05530 CA264_05535: CA264_05535 - hypothetical protein, at 1,286,954 to 1,288,087 _05535 Position (kb) 1284 1285 1286 1287Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1283.041 kb on + strand, within CA264_05525at 1283.099 kb on - strand, within CA264_05525at 1283.140 kb on + strand, within CA264_05525at 1283.199 kb on - strand, within CA264_05525at 1283.237 kb on + strand, within CA264_05525at 1283.262 kb on - strand, within CA264_05525at 1283.262 kb on - strand, within CA264_05525at 1283.309 kb on + strand, within CA264_05525at 1283.310 kb on - strand, within CA264_05525at 1283.349 kb on - strand, within CA264_05525at 1283.384 kb on - strand, within CA264_05525at 1283.396 kb on - strand, within CA264_05525at 1283.424 kb on + strand, within CA264_05525at 1283.426 kb on + strand, within CA264_05525at 1283.495 kb on - strand, within CA264_05525at 1283.507 kb on + strand, within CA264_05525at 1283.508 kb on - strand, within CA264_05525at 1283.576 kb on + strand, within CA264_05525at 1283.577 kb on - strand, within CA264_05525at 1283.725 kb on + strandat 1283.780 kb on + strandat 1283.812 kb on - strandat 1283.827 kb on + strandat 1283.828 kb on - strandat 1283.828 kb on - strandat 1283.832 kb on + strandat 1283.839 kb on + strandat 1283.840 kb on - strandat 1283.866 kb on + strandat 1283.919 kb on + strandat 1283.920 kb on - strandat 1283.995 kb on - strandat 1283.997 kb on + strandat 1283.997 kb on + strandat 1284.052 kb on - strandat 1284.061 kb on + strandat 1284.062 kb on - strandat 1284.062 kb on - strandat 1284.062 kb on - strandat 1284.062 kb on - strandat 1284.096 kb on + strandat 1284.097 kb on - strandat 1284.117 kb on - strandat 1284.117 kb on - strandat 1284.117 kb on - strandat 1284.117 kb on - strandat 1284.117 kb on - strandat 1284.117 kb on - strandat 1284.267 kb on - strandat 1284.267 kb on - strandat 1284.568 kb on + strand, within CA264_05530at 1284.569 kb on - strand, within CA264_05530at 1284.686 kb on + strand, within CA264_05530at 1284.870 kb on - strand, within CA264_05530at 1284.955 kb on + strand, within CA264_05530at 1284.956 kb on - strand, within CA264_05530at 1284.959 kb on - strand, within CA264_05530at 1285.066 kb on - strand, within CA264_05530at 1285.113 kb on - strand, within CA264_05530at 1285.173 kb on + strand, within CA264_05530at 1285.315 kb on - strand, within CA264_05530at 1285.341 kb on - strand, within CA264_05530at 1285.368 kb on - strand, within CA264_05530at 1285.413 kb on - strand, within CA264_05530at 1285.413 kb on - strand, within CA264_05530at 1285.484 kb on - strand, within CA264_05530at 1285.494 kb on + strand, within CA264_05530at 1285.526 kb on + strand, within CA264_05530at 1285.526 kb on + strand, within CA264_05530at 1285.540 kb on - strand, within CA264_05530at 1285.540 kb on - strand, within CA264_05530at 1285.540 kb on - strand, within CA264_05530at 1285.541 kb on + strand, within CA264_05530at 1285.607 kb on - strand, within CA264_05530at 1285.643 kb on + strand, within CA264_05530at 1285.823 kb on - strand, within CA264_05530at 1285.858 kb on + strand, within CA264_05530at 1285.859 kb on - strand, within CA264_05530at 1286.024 kb on + strand, within CA264_05530at 1286.024 kb on + strand, within CA264_05530at 1286.026 kb on + strand, within CA264_05530at 1286.026 kb on + strand, within CA264_05530at 1286.045 kb on + strand, within CA264_05530at 1286.045 kb on + strand, within CA264_05530at 1286.097 kb on + strand, within CA264_05530at 1286.127 kb on - strand, within CA264_05530at 1286.127 kb on - strand, within CA264_05530at 1286.238 kb on - strand, within CA264_05530at 1286.238 kb on - strand, within CA264_05530at 1286.238 kb on - strand, within CA264_05530at 1286.251 kb on - strand, within CA264_05530at 1286.252 kb on + strand, within CA264_05530at 1286.252 kb on + strand, within CA264_05530at 1286.252 kb on + strand, within CA264_05530at 1286.258 kb on - strand, within CA264_05530at 1286.273 kb on - strand, within CA264_05530at 1286.339 kb on + strand, within CA264_05530at 1286.339 kb on + strand, within CA264_05530at 1286.360 kb on - strand, within CA264_05530at 1286.372 kb on + strandat 1286.372 kb on + strandat 1286.372 kb on + strandat 1286.564 kb on + strandat 1286.575 kb on - strandat 1286.575 kb on - strandat 1286.575 kb on - strandat 1286.686 kb on - strandat 1286.739 kb on - strandat 1286.791 kb on + strandat 1286.795 kb on + strandat 1286.921 kb on + strandat 1286.995 kb on + strandat 1286.995 kb on + strandat 1287.096 kb on + strand, within CA264_05535at 1287.096 kb on + strand, within CA264_05535at 1287.145 kb on + strand, within CA264_05535at 1287.145 kb on + strand, within CA264_05535at 1287.146 kb on - strand, within CA264_05535at 1287.146 kb on - strand, within CA264_05535at 1287.146 kb on - strand, within CA264_05535at 1287.146 kb on - strand, within CA264_05535at 1287.146 kb on - strand, within CA264_05535at 1287.146 kb on - strand, within CA264_05535at 1287.150 kb on + strand, within CA264_05535at 1287.150 kb on + strand, within CA264_05535at 1287.150 kb on + strand, within CA264_05535at 1287.150 kb on + strand, within CA264_05535at 1287.151 kb on - strand, within CA264_05535at 1287.151 kb on - strand, within CA264_05535at 1287.195 kb on + strand, within CA264_05535at 1287.214 kb on + strand, within CA264_05535at 1287.216 kb on + strand, within CA264_05535at 1287.217 kb on - strand, within CA264_05535at 1287.262 kb on - strand, within CA264_05535at 1287.405 kb on + strand, within CA264_05535at 1287.405 kb on + strand, within CA264_05535at 1287.405 kb on + strand, within CA264_05535at 1287.516 kb on - strand, within CA264_05535at 1287.528 kb on + strand, within CA264_05535at 1287.528 kb on + strand, within CA264_05535at 1287.571 kb on - strand, within CA264_05535at 1287.592 kb on - strand, within CA264_05535

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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1,283,041 + CA264_05525 0.29 -3.5
1,283,099 - CA264_05525 0.34 -1.9
1,283,140 + CA264_05525 0.38 -1.9
1,283,199 - CA264_05525 0.44 -0.2
1,283,237 + CA264_05525 0.47 -1.0
1,283,262 - CA264_05525 0.50 -0.7
1,283,262 - CA264_05525 0.50 -2.0
1,283,309 + CA264_05525 0.54 -0.1
1,283,310 - CA264_05525 0.54 -1.3
1,283,349 - CA264_05525 0.58 -1.5
1,283,384 - CA264_05525 0.61 -1.1
1,283,396 - CA264_05525 0.62 -1.4
1,283,424 + CA264_05525 0.65 -1.2
1,283,426 + CA264_05525 0.65 -1.4
1,283,495 - CA264_05525 0.72 -1.1
1,283,507 + CA264_05525 0.73 -1.5
1,283,508 - CA264_05525 0.73 -1.6
1,283,576 + CA264_05525 0.79 -0.6
1,283,577 - CA264_05525 0.79 -1.2
1,283,725 + -0.1
1,283,780 + -0.7
1,283,812 - -0.6
1,283,827 + +0.2
1,283,828 - +1.6
1,283,828 - +0.4
1,283,832 + -1.8
1,283,839 + +0.7
1,283,840 - -0.8
1,283,866 + +0.0
1,283,919 + -0.3
1,283,920 - +0.5
1,283,995 - -0.4
1,283,997 + -0.3
1,283,997 + -0.5
1,284,052 - +1.3
1,284,061 + +0.1
1,284,062 - -0.5
1,284,062 - -0.0
1,284,062 - -0.5
1,284,062 - +0.2
1,284,096 + -1.2
1,284,097 - -0.6
1,284,117 - -0.8
1,284,117 - +0.8
1,284,117 - -0.3
1,284,117 - +0.5
1,284,117 - -1.0
1,284,117 - +0.0
1,284,267 - -0.5
1,284,267 - +0.1
1,284,568 + CA264_05530 0.20 +0.2
1,284,569 - CA264_05530 0.20 -1.5
1,284,686 + CA264_05530 0.25 +1.9
1,284,870 - CA264_05530 0.32 +1.1
1,284,955 + CA264_05530 0.35 +0.1
1,284,956 - CA264_05530 0.35 -0.4
1,284,959 - CA264_05530 0.35 -0.3
1,285,066 - CA264_05530 0.40 +0.3
1,285,113 - CA264_05530 0.41 +0.7
1,285,173 + CA264_05530 0.44 -0.9
1,285,315 - CA264_05530 0.49 -1.8
1,285,341 - CA264_05530 0.50 -1.3
1,285,368 - CA264_05530 0.51 -0.9
1,285,413 - CA264_05530 0.53 +0.6
1,285,413 - CA264_05530 0.53 +1.5
1,285,484 - CA264_05530 0.56 -0.5
1,285,494 + CA264_05530 0.56 +0.7
1,285,526 + CA264_05530 0.57 -0.6
1,285,526 + CA264_05530 0.57 -0.4
1,285,540 - CA264_05530 0.58 +0.2
1,285,540 - CA264_05530 0.58 -0.5
1,285,540 - CA264_05530 0.58 +0.7
1,285,541 + CA264_05530 0.58 -0.5
1,285,607 - CA264_05530 0.61 -0.2
1,285,643 + CA264_05530 0.62 +0.3
1,285,823 - CA264_05530 0.69 +0.6
1,285,858 + CA264_05530 0.70 +0.9
1,285,859 - CA264_05530 0.70 +0.9
1,286,024 + CA264_05530 0.77 +0.2
1,286,024 + CA264_05530 0.77 +0.1
1,286,026 + CA264_05530 0.77 -0.5
1,286,026 + CA264_05530 0.77 +1.5
1,286,045 + CA264_05530 0.77 -0.1
1,286,045 + CA264_05530 0.77 -0.4
1,286,097 + CA264_05530 0.80 -0.5
1,286,127 - CA264_05530 0.81 -0.9
1,286,127 - CA264_05530 0.81 -0.5
1,286,238 - CA264_05530 0.85 +0.5
1,286,238 - CA264_05530 0.85 +0.0
1,286,238 - CA264_05530 0.85 -0.2
1,286,251 - CA264_05530 0.85 +1.5
1,286,252 + CA264_05530 0.85 +1.1
1,286,252 + CA264_05530 0.85 -0.8
1,286,252 + CA264_05530 0.85 +0.1
1,286,258 - CA264_05530 0.86 -1.6
1,286,273 - CA264_05530 0.86 +0.2
1,286,339 + CA264_05530 0.89 -0.5
1,286,339 + CA264_05530 0.89 -1.3
1,286,360 - CA264_05530 0.90 -1.4
1,286,372 + -0.4
1,286,372 + -1.2
1,286,372 + -0.2
1,286,564 + +0.2
1,286,575 - -1.5
1,286,575 - +0.2
1,286,575 - +0.2
1,286,686 - -0.9
1,286,739 - -1.6
1,286,791 + -1.0
1,286,795 + -1.4
1,286,921 + +0.2
1,286,995 + -0.3
1,286,995 + -0.2
1,287,096 + CA264_05535 0.13 -0.3
1,287,096 + CA264_05535 0.13 +0.0
1,287,145 + CA264_05535 0.17 -0.3
1,287,145 + CA264_05535 0.17 -0.1
1,287,146 - CA264_05535 0.17 +0.1
1,287,146 - CA264_05535 0.17 +4.1
1,287,146 - CA264_05535 0.17 -0.3
1,287,146 - CA264_05535 0.17 +0.5
1,287,146 - CA264_05535 0.17 +0.5
1,287,146 - CA264_05535 0.17 -0.0
1,287,150 + CA264_05535 0.17 -1.7
1,287,150 + CA264_05535 0.17 -0.1
1,287,150 + CA264_05535 0.17 +0.2
1,287,150 + CA264_05535 0.17 -0.9
1,287,151 - CA264_05535 0.17 -0.7
1,287,151 - CA264_05535 0.17 -0.7
1,287,195 + CA264_05535 0.21 -0.6
1,287,214 + CA264_05535 0.23 -0.3
1,287,216 + CA264_05535 0.23 -1.1
1,287,217 - CA264_05535 0.23 -0.9
1,287,262 - CA264_05535 0.27 +0.5
1,287,405 + CA264_05535 0.40 -0.7
1,287,405 + CA264_05535 0.40 -1.1
1,287,405 + CA264_05535 0.40 -1.7
1,287,516 - CA264_05535 0.50 -0.2
1,287,528 + CA264_05535 0.51 -0.4
1,287,528 + CA264_05535 0.51 -0.1
1,287,571 - CA264_05535 0.54 -1.1
1,287,592 - CA264_05535 0.56 +0.5

Or see this region's nucleotide sequence