Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05375

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05370 and CA264_05375 are separated by 161 nucleotidesCA264_05375 and CA264_05380 are separated by 312 nucleotides CA264_05370: CA264_05370 - tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB, at 1,245,199 to 1,246,518 _05370 CA264_05375: CA264_05375 - hypothetical protein, at 1,246,680 to 1,248,476 _05375 CA264_05380: CA264_05380 - glutamine synthetase type III, at 1,248,789 to 1,250,978 _05380 Position (kb) 1246 1247 1248 1249Strain fitness (log2 ratio) -2 -1 0 1 2at 1245.683 kb on + strand, within CA264_05370at 1245.721 kb on + strand, within CA264_05370at 1245.766 kb on - strand, within CA264_05370at 1245.788 kb on + strand, within CA264_05370at 1245.788 kb on + strand, within CA264_05370at 1245.788 kb on + strand, within CA264_05370at 1245.788 kb on + strand, within CA264_05370at 1245.789 kb on - strand, within CA264_05370at 1245.789 kb on - strand, within CA264_05370at 1245.794 kb on - strand, within CA264_05370at 1245.794 kb on - strand, within CA264_05370at 1245.809 kb on - strand, within CA264_05370at 1246.004 kb on - strand, within CA264_05370at 1246.093 kb on - strand, within CA264_05370at 1246.157 kb on + strand, within CA264_05370at 1246.158 kb on - strand, within CA264_05370at 1246.284 kb on - strand, within CA264_05370at 1246.284 kb on - strand, within CA264_05370at 1246.284 kb on - strand, within CA264_05370at 1246.373 kb on - strand, within CA264_05370at 1246.373 kb on - strand, within CA264_05370at 1246.384 kb on - strand, within CA264_05370at 1246.394 kb on + strandat 1246.394 kb on + strandat 1246.394 kb on + strandat 1246.394 kb on + strandat 1246.395 kb on - strandat 1246.395 kb on - strandat 1246.413 kb on + strandat 1246.480 kb on - strandat 1246.480 kb on - strandat 1246.485 kb on + strandat 1246.493 kb on - strandat 1246.493 kb on - strandat 1246.499 kb on + strandat 1246.499 kb on + strandat 1246.593 kb on + strandat 1246.681 kb on + strandat 1246.708 kb on + strandat 1246.764 kb on - strandat 1246.815 kb on + strandat 1246.816 kb on - strandat 1246.816 kb on - strandat 1246.817 kb on + strandat 1246.818 kb on - strandat 1246.818 kb on - strandat 1246.818 kb on - strandat 1246.840 kb on - strandat 1246.893 kb on - strand, within CA264_05375at 1247.000 kb on + strand, within CA264_05375at 1247.000 kb on + strand, within CA264_05375at 1247.001 kb on - strand, within CA264_05375at 1247.004 kb on + strand, within CA264_05375at 1247.005 kb on - strandat 1247.006 kb on + strand, within CA264_05375at 1247.006 kb on + strand, within CA264_05375at 1247.130 kb on - strand, within CA264_05375at 1247.153 kb on + strand, within CA264_05375at 1247.153 kb on + strand, within CA264_05375at 1247.153 kb on + strand, within CA264_05375at 1247.155 kb on + strand, within CA264_05375at 1247.155 kb on + strand, within CA264_05375at 1247.155 kb on + strand, within CA264_05375at 1247.155 kb on + strand, within CA264_05375at 1247.156 kb on - strand, within CA264_05375at 1247.156 kb on - strand, within CA264_05375at 1247.158 kb on + strand, within CA264_05375at 1247.158 kb on + strand, within CA264_05375at 1247.158 kb on + strand, within CA264_05375at 1247.159 kb on - strand, within CA264_05375at 1247.160 kb on + strand, within CA264_05375at 1247.161 kb on - strand, within CA264_05375at 1247.341 kb on + strand, within CA264_05375at 1247.341 kb on + strand, within CA264_05375at 1247.342 kb on - strand, within CA264_05375at 1247.362 kb on + strand, within CA264_05375at 1247.363 kb on - strand, within CA264_05375at 1247.437 kb on + strand, within CA264_05375at 1247.441 kb on - strand, within CA264_05375at 1247.441 kb on - strand, within CA264_05375at 1247.444 kb on - strand, within CA264_05375at 1247.519 kb on + strand, within CA264_05375at 1247.520 kb on - strand, within CA264_05375at 1247.522 kb on + strand, within CA264_05375at 1247.522 kb on + strand, within CA264_05375at 1247.522 kb on + strand, within CA264_05375at 1247.563 kb on - strand, within CA264_05375at 1247.612 kb on + strand, within CA264_05375at 1247.758 kb on - strand, within CA264_05375at 1247.773 kb on + strand, within CA264_05375at 1247.815 kb on + strand, within CA264_05375at 1248.028 kb on + strand, within CA264_05375at 1248.036 kb on - strand, within CA264_05375at 1248.263 kb on + strand, within CA264_05375at 1248.264 kb on - strand, within CA264_05375at 1248.265 kb on + strand, within CA264_05375at 1248.266 kb on - strand, within CA264_05375at 1248.266 kb on - strand, within CA264_05375at 1248.269 kb on - strand, within CA264_05375at 1248.269 kb on - strand, within CA264_05375at 1248.269 kb on - strand, within CA264_05375at 1248.336 kb on + strandat 1248.336 kb on + strandat 1248.336 kb on + strandat 1248.336 kb on + strandat 1248.337 kb on - strandat 1248.339 kb on - strandat 1248.339 kb on - strandat 1248.339 kb on - strandat 1248.341 kb on + strandat 1248.342 kb on - strandat 1248.342 kb on - strandat 1248.346 kb on + strandat 1248.346 kb on + strandat 1248.347 kb on - strandat 1248.380 kb on - strandat 1248.411 kb on - strandat 1248.437 kb on - strandat 1248.437 kb on - strandat 1248.438 kb on + strandat 1248.449 kb on + strandat 1248.460 kb on - strandat 1248.460 kb on - strandat 1248.462 kb on + strandat 1248.463 kb on - strandat 1248.465 kb on - strandat 1248.469 kb on + strandat 1248.470 kb on - strandat 1248.531 kb on - strandat 1248.537 kb on + strandat 1248.537 kb on + strandat 1248.539 kb on + strandat 1248.539 kb on + strandat 1248.540 kb on - strandat 1248.753 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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1,245,683 + CA264_05370 0.37 +0.8
1,245,721 + CA264_05370 0.40 -0.4
1,245,766 - CA264_05370 0.43 -0.8
1,245,788 + CA264_05370 0.45 +0.2
1,245,788 + CA264_05370 0.45 +1.5
1,245,788 + CA264_05370 0.45 -1.1
1,245,788 + CA264_05370 0.45 -0.4
1,245,789 - CA264_05370 0.45 -1.2
1,245,789 - CA264_05370 0.45 -1.1
1,245,794 - CA264_05370 0.45 -0.9
1,245,794 - CA264_05370 0.45 -1.2
1,245,809 - CA264_05370 0.46 -2.1
1,246,004 - CA264_05370 0.61 +0.2
1,246,093 - CA264_05370 0.68 -0.6
1,246,157 + CA264_05370 0.73 -1.3
1,246,158 - CA264_05370 0.73 -1.6
1,246,284 - CA264_05370 0.82 +0.0
1,246,284 - CA264_05370 0.82 -0.6
1,246,284 - CA264_05370 0.82 -0.2
1,246,373 - CA264_05370 0.89 -0.9
1,246,373 - CA264_05370 0.89 +1.1
1,246,384 - CA264_05370 0.90 +0.1
1,246,394 + -0.8
1,246,394 + -0.8
1,246,394 + -0.8
1,246,394 + -0.4
1,246,395 - -1.1
1,246,395 - -0.6
1,246,413 + +0.2
1,246,480 - -0.4
1,246,480 - +0.2
1,246,485 + +0.4
1,246,493 - -0.1
1,246,493 - -1.2
1,246,499 + -0.6
1,246,499 + -0.8
1,246,593 + -0.2
1,246,681 + +1.2
1,246,708 + -0.6
1,246,764 - +0.2
1,246,815 + -0.7
1,246,816 - +0.2
1,246,816 - +0.4
1,246,817 + -1.5
1,246,818 - +0.8
1,246,818 - +1.0
1,246,818 - +1.8
1,246,840 - +0.8
1,246,893 - CA264_05375 0.12 -0.0
1,247,000 + CA264_05375 0.18 -0.5
1,247,000 + CA264_05375 0.18 +0.2
1,247,001 - CA264_05375 0.18 +0.3
1,247,004 + CA264_05375 0.18 +0.5
1,247,005 - +1.5
1,247,006 + CA264_05375 0.18 -1.4
1,247,006 + CA264_05375 0.18 -0.1
1,247,130 - CA264_05375 0.25 -0.1
1,247,153 + CA264_05375 0.26 +0.2
1,247,153 + CA264_05375 0.26 +0.7
1,247,153 + CA264_05375 0.26 -1.2
1,247,155 + CA264_05375 0.26 +0.4
1,247,155 + CA264_05375 0.26 +1.0
1,247,155 + CA264_05375 0.26 +0.6
1,247,155 + CA264_05375 0.26 -0.7
1,247,156 - CA264_05375 0.26 +0.5
1,247,156 - CA264_05375 0.26 -0.3
1,247,158 + CA264_05375 0.27 +0.3
1,247,158 + CA264_05375 0.27 -0.2
1,247,158 + CA264_05375 0.27 +1.0
1,247,159 - CA264_05375 0.27 +0.8
1,247,160 + CA264_05375 0.27 -1.1
1,247,161 - CA264_05375 0.27 +0.5
1,247,341 + CA264_05375 0.37 -0.1
1,247,341 + CA264_05375 0.37 +1.1
1,247,342 - CA264_05375 0.37 +0.5
1,247,362 + CA264_05375 0.38 -0.2
1,247,363 - CA264_05375 0.38 -0.5
1,247,437 + CA264_05375 0.42 +0.1
1,247,441 - CA264_05375 0.42 -1.7
1,247,441 - CA264_05375 0.42 +0.5
1,247,444 - CA264_05375 0.43 +1.0
1,247,519 + CA264_05375 0.47 +1.5
1,247,520 - CA264_05375 0.47 +0.5
1,247,522 + CA264_05375 0.47 +0.8
1,247,522 + CA264_05375 0.47 +0.3
1,247,522 + CA264_05375 0.47 -0.3
1,247,563 - CA264_05375 0.49 +1.0
1,247,612 + CA264_05375 0.52 -0.3
1,247,758 - CA264_05375 0.60 +0.4
1,247,773 + CA264_05375 0.61 +0.6
1,247,815 + CA264_05375 0.63 -0.1
1,248,028 + CA264_05375 0.75 +0.6
1,248,036 - CA264_05375 0.75 +0.5
1,248,263 + CA264_05375 0.88 +0.5
1,248,264 - CA264_05375 0.88 +1.2
1,248,265 + CA264_05375 0.88 -0.3
1,248,266 - CA264_05375 0.88 +1.1
1,248,266 - CA264_05375 0.88 +0.9
1,248,269 - CA264_05375 0.88 +0.8
1,248,269 - CA264_05375 0.88 -0.7
1,248,269 - CA264_05375 0.88 +0.1
1,248,336 + +0.5
1,248,336 + +0.4
1,248,336 + +0.0
1,248,336 + -0.1
1,248,337 - +0.2
1,248,339 - -0.1
1,248,339 - +0.8
1,248,339 - +1.4
1,248,341 + +0.6
1,248,342 - +0.5
1,248,342 - -1.0
1,248,346 + +1.1
1,248,346 + +0.2
1,248,347 - +0.2
1,248,380 - +0.0
1,248,411 - +0.3
1,248,437 - +0.4
1,248,437 - +0.1
1,248,438 + +0.2
1,248,449 + +0.5
1,248,460 - -0.1
1,248,460 - +0.6
1,248,462 + -0.8
1,248,463 - +0.7
1,248,465 - +0.1
1,248,469 + -0.1
1,248,470 - +0.9
1,248,531 - -0.6
1,248,537 + -0.1
1,248,537 + +0.1
1,248,539 + +0.5
1,248,539 + +1.8
1,248,540 - +0.1
1,248,753 - -0.1

Or see this region's nucleotide sequence