Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04990

Experiment: m.b. Cisplatin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04980 and CA264_04985 overlap by 1 nucleotidesCA264_04985 and CA264_04990 are separated by 3 nucleotidesCA264_04990 and CA264_04995 are separated by 150 nucleotidesCA264_04995 and CA264_05000 are separated by 107 nucleotides CA264_04980: CA264_04980 - tRNA(5-methylaminomethyl-2-thiouridine)- methyltransferase, at 1,156,302 to 1,157,429 _04980 CA264_04985: CA264_04985 - hypothetical protein, at 1,157,429 to 1,158,184 _04985 CA264_04990: CA264_04990 - T9SS C-terminal target domain-containing protein, at 1,158,188 to 1,159,852 _04990 CA264_04995: CA264_04995 - hypothetical protein, at 1,160,003 to 1,160,593 _04995 CA264_05000: CA264_05000 - ribulose-phosphate 3-epimerase, at 1,160,701 to 1,161,354 _05000 Position (kb) 1158 1159 1160Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1157.396 kb on + strandat 1157.406 kb on + strandat 1157.531 kb on + strand, within CA264_04985at 1157.562 kb on - strand, within CA264_04985at 1157.568 kb on + strand, within CA264_04985at 1157.583 kb on - strand, within CA264_04985at 1157.669 kb on + strand, within CA264_04985at 1157.730 kb on - strand, within CA264_04985at 1157.862 kb on - strand, within CA264_04985at 1157.895 kb on - strand, within CA264_04985at 1157.913 kb on - strand, within CA264_04985at 1157.913 kb on - strand, within CA264_04985at 1157.913 kb on - strand, within CA264_04985at 1157.914 kb on + strand, within CA264_04985at 1157.914 kb on + strand, within CA264_04985at 1157.914 kb on + strand, within CA264_04985at 1157.915 kb on - strand, within CA264_04985at 1157.915 kb on - strand, within CA264_04985at 1157.915 kb on - strand, within CA264_04985at 1157.918 kb on + strand, within CA264_04985at 1157.919 kb on - strand, within CA264_04985at 1158.035 kb on + strand, within CA264_04985at 1158.036 kb on - strand, within CA264_04985at 1158.059 kb on + strand, within CA264_04985at 1158.059 kb on + strand, within CA264_04985at 1158.068 kb on + strand, within CA264_04985at 1158.069 kb on - strand, within CA264_04985at 1158.083 kb on + strand, within CA264_04985at 1158.116 kb on + strandat 1158.121 kb on + strandat 1158.182 kb on + strandat 1158.187 kb on + strandat 1158.187 kb on + strandat 1158.188 kb on - strandat 1158.207 kb on - strandat 1158.207 kb on - strandat 1158.256 kb on + strandat 1158.257 kb on - strandat 1158.264 kb on + strandat 1158.282 kb on + strandat 1158.286 kb on - strandat 1158.287 kb on + strandat 1158.288 kb on - strandat 1158.314 kb on + strandat 1158.314 kb on + strandat 1158.314 kb on + strandat 1158.420 kb on - strand, within CA264_04990at 1158.433 kb on - strand, within CA264_04990at 1158.433 kb on - strand, within CA264_04990at 1158.433 kb on - strand, within CA264_04990at 1158.453 kb on + strand, within CA264_04990at 1158.453 kb on + strand, within CA264_04990at 1158.454 kb on - strand, within CA264_04990at 1158.454 kb on - strand, within CA264_04990at 1158.454 kb on - strand, within CA264_04990at 1158.459 kb on - strand, within CA264_04990at 1158.533 kb on + strand, within CA264_04990at 1158.534 kb on - strand, within CA264_04990at 1158.534 kb on - strand, within CA264_04990at 1158.562 kb on + strandat 1158.577 kb on + strand, within CA264_04990at 1158.604 kb on + strand, within CA264_04990at 1158.604 kb on + strand, within CA264_04990at 1158.723 kb on - strand, within CA264_04990at 1158.896 kb on - strand, within CA264_04990at 1158.896 kb on - strand, within CA264_04990at 1158.896 kb on - strand, within CA264_04990at 1158.988 kb on + strand, within CA264_04990at 1158.988 kb on + strand, within CA264_04990at 1158.989 kb on - strand, within CA264_04990at 1158.989 kb on - strand, within CA264_04990at 1158.989 kb on - strand, within CA264_04990at 1159.026 kb on - strand, within CA264_04990at 1159.071 kb on - strand, within CA264_04990at 1159.100 kb on + strand, within CA264_04990at 1159.100 kb on + strand, within CA264_04990at 1159.101 kb on - strand, within CA264_04990at 1159.102 kb on + strand, within CA264_04990at 1159.103 kb on - strand, within CA264_04990at 1159.103 kb on - strand, within CA264_04990at 1159.103 kb on - strand, within CA264_04990at 1159.103 kb on - strand, within CA264_04990at 1159.103 kb on - strand, within CA264_04990at 1159.106 kb on + strand, within CA264_04990at 1159.254 kb on + strand, within CA264_04990at 1159.330 kb on - strand, within CA264_04990at 1159.365 kb on - strand, within CA264_04990at 1159.400 kb on - strand, within CA264_04990at 1159.469 kb on - strand, within CA264_04990at 1159.488 kb on + strand, within CA264_04990at 1159.567 kb on + strand, within CA264_04990at 1159.568 kb on - strand, within CA264_04990at 1159.615 kb on + strand, within CA264_04990at 1159.645 kb on - strand, within CA264_04990at 1159.687 kb on - strandat 1159.687 kb on - strandat 1159.730 kb on - strandat 1159.730 kb on - strandat 1159.793 kb on + strandat 1159.794 kb on - strandat 1159.796 kb on - strandat 1159.908 kb on + strandat 1159.911 kb on - strandat 1159.926 kb on + strandat 1159.989 kb on + strandat 1159.990 kb on - strandat 1160.031 kb on - strandat 1160.031 kb on - strandat 1160.216 kb on + strand, within CA264_04995at 1160.219 kb on - strand, within CA264_04995at 1160.350 kb on + strand, within CA264_04995at 1160.351 kb on - strand, within CA264_04995at 1160.390 kb on + strand, within CA264_04995at 1160.391 kb on - strand, within CA264_04995at 1160.391 kb on - strand, within CA264_04995at 1160.436 kb on + strand, within CA264_04995at 1160.437 kb on - strand, within CA264_04995at 1160.499 kb on + strand, within CA264_04995at 1160.565 kb on - strandat 1160.591 kb on + strandat 1160.591 kb on + strandat 1160.635 kb on + strandat 1160.635 kb on + strandat 1160.697 kb on - strandat 1160.697 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.025 mg/ml
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1,157,396 + -0.4
1,157,406 + -0.9
1,157,531 + CA264_04985 0.13 -1.7
1,157,562 - CA264_04985 0.18 -0.4
1,157,568 + CA264_04985 0.18 -1.9
1,157,583 - CA264_04985 0.20 -0.5
1,157,669 + CA264_04985 0.32 +0.8
1,157,730 - CA264_04985 0.40 -1.5
1,157,862 - CA264_04985 0.57 -0.3
1,157,895 - CA264_04985 0.62 -0.4
1,157,913 - CA264_04985 0.64 +0.8
1,157,913 - CA264_04985 0.64 -1.9
1,157,913 - CA264_04985 0.64 -0.0
1,157,914 + CA264_04985 0.64 -2.1
1,157,914 + CA264_04985 0.64 -1.4
1,157,914 + CA264_04985 0.64 -0.2
1,157,915 - CA264_04985 0.64 +0.2
1,157,915 - CA264_04985 0.64 -1.9
1,157,915 - CA264_04985 0.64 -0.1
1,157,918 + CA264_04985 0.65 -2.3
1,157,919 - CA264_04985 0.65 +1.6
1,158,035 + CA264_04985 0.80 -1.4
1,158,036 - CA264_04985 0.80 -0.6
1,158,059 + CA264_04985 0.83 -1.9
1,158,059 + CA264_04985 0.83 -1.8
1,158,068 + CA264_04985 0.85 -1.1
1,158,069 - CA264_04985 0.85 -1.2
1,158,083 + CA264_04985 0.87 -1.5
1,158,116 + -0.9
1,158,121 + -1.6
1,158,182 + +0.0
1,158,187 + -1.0
1,158,187 + -1.9
1,158,188 - -0.1
1,158,207 - +0.3
1,158,207 - +2.2
1,158,256 + -0.7
1,158,257 - -0.2
1,158,264 + +0.6
1,158,282 + +0.9
1,158,286 - +0.2
1,158,287 + -0.6
1,158,288 - -0.5
1,158,314 + +0.8
1,158,314 + +1.4
1,158,314 + +0.4
1,158,420 - CA264_04990 0.14 +0.9
1,158,433 - CA264_04990 0.15 -0.3
1,158,433 - CA264_04990 0.15 +1.5
1,158,433 - CA264_04990 0.15 +1.0
1,158,453 + CA264_04990 0.16 -0.1
1,158,453 + CA264_04990 0.16 -1.4
1,158,454 - CA264_04990 0.16 -0.3
1,158,454 - CA264_04990 0.16 +0.7
1,158,454 - CA264_04990 0.16 +0.5
1,158,459 - CA264_04990 0.16 -0.4
1,158,533 + CA264_04990 0.21 -0.6
1,158,534 - CA264_04990 0.21 -0.8
1,158,534 - CA264_04990 0.21 +0.1
1,158,562 + +3.6
1,158,577 + CA264_04990 0.23 -1.2
1,158,604 + CA264_04990 0.25 -0.4
1,158,604 + CA264_04990 0.25 +0.3
1,158,723 - CA264_04990 0.32 +0.6
1,158,896 - CA264_04990 0.43 +2.1
1,158,896 - CA264_04990 0.43 -3.4
1,158,896 - CA264_04990 0.43 -0.2
1,158,988 + CA264_04990 0.48 -1.0
1,158,988 + CA264_04990 0.48 -0.9
1,158,989 - CA264_04990 0.48 -0.2
1,158,989 - CA264_04990 0.48 -0.4
1,158,989 - CA264_04990 0.48 -0.6
1,159,026 - CA264_04990 0.50 -0.9
1,159,071 - CA264_04990 0.53 -0.9
1,159,100 + CA264_04990 0.55 -0.4
1,159,100 + CA264_04990 0.55 -0.2
1,159,101 - CA264_04990 0.55 -1.0
1,159,102 + CA264_04990 0.55 -0.7
1,159,103 - CA264_04990 0.55 +0.3
1,159,103 - CA264_04990 0.55 -1.1
1,159,103 - CA264_04990 0.55 -0.3
1,159,103 - CA264_04990 0.55 -0.1
1,159,103 - CA264_04990 0.55 -0.1
1,159,106 + CA264_04990 0.55 +0.2
1,159,254 + CA264_04990 0.64 +0.6
1,159,330 - CA264_04990 0.69 -1.0
1,159,365 - CA264_04990 0.71 -0.8
1,159,400 - CA264_04990 0.73 -0.4
1,159,469 - CA264_04990 0.77 -1.0
1,159,488 + CA264_04990 0.78 +0.8
1,159,567 + CA264_04990 0.83 -1.1
1,159,568 - CA264_04990 0.83 -1.4
1,159,615 + CA264_04990 0.86 +1.3
1,159,645 - CA264_04990 0.88 -0.8
1,159,687 - +2.1
1,159,687 - +0.4
1,159,730 - +0.5
1,159,730 - +0.5
1,159,793 + -0.1
1,159,794 - -0.2
1,159,796 - -0.4
1,159,908 + +0.6
1,159,911 - -0.4
1,159,926 + +0.6
1,159,989 + -0.3
1,159,990 - +0.6
1,160,031 - +0.1
1,160,031 - +1.1
1,160,216 + CA264_04995 0.36 -0.7
1,160,219 - CA264_04995 0.37 +0.1
1,160,350 + CA264_04995 0.59 -0.4
1,160,351 - CA264_04995 0.59 +1.2
1,160,390 + CA264_04995 0.65 -1.6
1,160,391 - CA264_04995 0.66 -0.6
1,160,391 - CA264_04995 0.66 -0.5
1,160,436 + CA264_04995 0.73 -0.9
1,160,437 - CA264_04995 0.73 +0.3
1,160,499 + CA264_04995 0.84 -0.4
1,160,565 - -0.6
1,160,591 + -0.2
1,160,591 + -1.1
1,160,635 + -1.0
1,160,635 + -0.4
1,160,697 - -1.3
1,160,697 - -0.2

Or see this region's nucleotide sequence