Experiment: 150_mag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS22110 and AMB_RS22115 overlap by 4 nucleotides AMB_RS22115 and AMB_RS22120 are separated by 125 nucleotides AMB_RS22120 and AMB_RS22125 are separated by 63 nucleotides AMB_RS22125 and AMB_RS22130 are separated by 50 nucleotides
AMB_RS22110: AMB_RS22110 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 4,774,686 to 4,775,510
_RS22110
AMB_RS22115: AMB_RS22115 - pantoate--beta-alanine ligase, at 4,775,507 to 4,776,361
_RS22115
AMB_RS22120: AMB_RS22120 - TldD/PmbA family protein, at 4,776,487 to 4,777,830
_RS22120
AMB_RS22125: AMB_RS22125 - hypothetical protein, at 4,777,894 to 4,778,589
_RS22125
AMB_RS22130: AMB_RS22130 - bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase, at 4,778,640 to 4,779,527
_RS22130
Position (kb) 4776
4777
4778 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4776.360 kb on - strand at 4776.488 kb on + strand at 4776.674 kb on + strand, within AMB_RS22120 at 4776.722 kb on + strand, within AMB_RS22120 at 4776.722 kb on + strand, within AMB_RS22120 at 4776.722 kb on + strand, within AMB_RS22120 at 4776.722 kb on + strand, within AMB_RS22120 at 4776.722 kb on + strand, within AMB_RS22120 at 4776.722 kb on + strand, within AMB_RS22120 at 4776.723 kb on - strand, within AMB_RS22120 at 4776.723 kb on - strand, within AMB_RS22120 at 4776.723 kb on - strand, within AMB_RS22120 at 4776.782 kb on + strand, within AMB_RS22120 at 4776.783 kb on - strand, within AMB_RS22120 at 4776.783 kb on - strand, within AMB_RS22120 at 4776.785 kb on - strand, within AMB_RS22120 at 4777.244 kb on + strand, within AMB_RS22120 at 4777.245 kb on - strand, within AMB_RS22120 at 4777.245 kb on - strand, within AMB_RS22120 at 4777.245 kb on - strand, within AMB_RS22120 at 4777.245 kb on - strand, within AMB_RS22120 at 4777.250 kb on + strand, within AMB_RS22120 at 4777.250 kb on + strand, within AMB_RS22120 at 4777.251 kb on - strand, within AMB_RS22120 at 4777.323 kb on - strand, within AMB_RS22120 at 4777.541 kb on + strand, within AMB_RS22120 at 4777.542 kb on - strand, within AMB_RS22120 at 4777.542 kb on - strand, within AMB_RS22120 at 4778.157 kb on + strand, within AMB_RS22125 at 4778.158 kb on - strand, within AMB_RS22125 at 4778.237 kb on + strand, within AMB_RS22125 at 4778.238 kb on - strand, within AMB_RS22125 at 4778.430 kb on - strand, within AMB_RS22125 at 4778.430 kb on - strand, within AMB_RS22125 at 4778.438 kb on + strand, within AMB_RS22125 at 4778.438 kb on + strand, within AMB_RS22125 at 4778.438 kb on + strand, within AMB_RS22125 at 4778.438 kb on + strand, within AMB_RS22125 at 4778.438 kb on + strand, within AMB_RS22125 at 4778.438 kb on + strand, within AMB_RS22125 at 4778.439 kb on - strand, within AMB_RS22125 at 4778.456 kb on + strand, within AMB_RS22125 at 4778.641 kb on + strand at 4778.641 kb on + strand at 4778.641 kb on + strand at 4778.642 kb on - strand at 4778.642 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_mag_1 remove 4,776,360 - +0.0 4,776,488 + -0.1 4,776,674 + AMB_RS22120 0.14 +0.1 4,776,722 + AMB_RS22120 0.17 -0.3 4,776,722 + AMB_RS22120 0.17 +0.6 4,776,722 + AMB_RS22120 0.17 +0.5 4,776,722 + AMB_RS22120 0.17 -0.1 4,776,722 + AMB_RS22120 0.17 -0.2 4,776,722 + AMB_RS22120 0.17 +0.2 4,776,723 - AMB_RS22120 0.18 -0.8 4,776,723 - AMB_RS22120 0.18 -0.4 4,776,723 - AMB_RS22120 0.18 -3.1 4,776,782 + AMB_RS22120 0.22 -0.7 4,776,783 - AMB_RS22120 0.22 -1.0 4,776,783 - AMB_RS22120 0.22 -1.3 4,776,785 - AMB_RS22120 0.22 -0.6 4,777,244 + AMB_RS22120 0.56 -0.0 4,777,245 - AMB_RS22120 0.56 -0.5 4,777,245 - AMB_RS22120 0.56 -0.4 4,777,245 - AMB_RS22120 0.56 +0.1 4,777,245 - AMB_RS22120 0.56 +1.0 4,777,250 + AMB_RS22120 0.57 +0.4 4,777,250 + AMB_RS22120 0.57 -2.0 4,777,251 - AMB_RS22120 0.57 +1.0 4,777,323 - AMB_RS22120 0.62 +0.2 4,777,541 + AMB_RS22120 0.78 -1.0 4,777,542 - AMB_RS22120 0.78 -0.3 4,777,542 - AMB_RS22120 0.78 +0.1 4,778,157 + AMB_RS22125 0.38 -0.9 4,778,158 - AMB_RS22125 0.38 +0.3 4,778,237 + AMB_RS22125 0.49 +0.2 4,778,238 - AMB_RS22125 0.49 -0.7 4,778,430 - AMB_RS22125 0.77 -1.9 4,778,430 - AMB_RS22125 0.77 -0.2 4,778,438 + AMB_RS22125 0.78 -1.3 4,778,438 + AMB_RS22125 0.78 -1.0 4,778,438 + AMB_RS22125 0.78 -0.4 4,778,438 + AMB_RS22125 0.78 -2.0 4,778,438 + AMB_RS22125 0.78 -0.5 4,778,438 + AMB_RS22125 0.78 -0.5 4,778,439 - AMB_RS22125 0.78 -1.8 4,778,456 + AMB_RS22125 0.81 -1.3 4,778,641 + -0.1 4,778,641 + -2.4 4,778,641 + -0.7 4,778,642 - -2.3 4,778,642 - -0.4
Or see this region's nucleotide sequence