Experiment: 150_mag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS22065 and AMB_RS22070 are separated by 225 nucleotides AMB_RS22070 and AMB_RS22075 are separated by 13 nucleotides AMB_RS22075 and AMB_RS23810 are separated by 13 nucleotides AMB_RS23810 and AMB_RS22080 are separated by 2 nucleotides
AMB_RS22065: AMB_RS22065 - class I SAM-dependent rRNA methyltransferase, at 4,764,512 to 4,765,717
_RS22065
AMB_RS22070: AMB_RS22070 - cytochrome-c oxidase, cbb3-type subunit I, at 4,765,943 to 4,767,397
_RS22070
AMB_RS22075: AMB_RS22075 - cytochrome-c oxidase, cbb3-type subunit II, at 4,767,411 to 4,768,133
_RS22075
AMB_RS23810: AMB_RS23810 - CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone, at 4,768,147 to 4,768,308
_RS23810
AMB_RS22080: AMB_RS22080 - cytochrome-c oxidase, cbb3-type subunit III, at 4,768,311 to 4,769,171
_RS22080
Position (kb) 4765
4766
4767
4768 Strain fitness (log2 ratio) -2
-1
0
1 at 4765.005 kb on + strand, within AMB_RS22065 at 4765.005 kb on + strand, within AMB_RS22065 at 4765.005 kb on + strand, within AMB_RS22065 at 4765.006 kb on - strand, within AMB_RS22065 at 4765.006 kb on - strand, within AMB_RS22065 at 4765.009 kb on + strand, within AMB_RS22065 at 4765.009 kb on + strand, within AMB_RS22065 at 4765.009 kb on + strand, within AMB_RS22065 at 4765.009 kb on + strand, within AMB_RS22065 at 4765.009 kb on + strand, within AMB_RS22065 at 4765.009 kb on + strand, within AMB_RS22065 at 4765.009 kb on + strand, within AMB_RS22065 at 4765.009 kb on + strand, within AMB_RS22065 at 4765.009 kb on + strand, within AMB_RS22065 at 4765.009 kb on + strand, within AMB_RS22065 at 4765.010 kb on - strand, within AMB_RS22065 at 4765.010 kb on - strand, within AMB_RS22065 at 4765.010 kb on - strand, within AMB_RS22065 at 4765.010 kb on - strand, within AMB_RS22065 at 4765.010 kb on - strand, within AMB_RS22065 at 4765.010 kb on - strand, within AMB_RS22065 at 4765.010 kb on - strand, within AMB_RS22065 at 4765.010 kb on - strand, within AMB_RS22065 at 4765.010 kb on - strand, within AMB_RS22065 at 4765.010 kb on - strand, within AMB_RS22065 at 4765.010 kb on - strand, within AMB_RS22065 at 4765.010 kb on - strand, within AMB_RS22065 at 4765.011 kb on + strand, within AMB_RS22065 at 4765.011 kb on + strand, within AMB_RS22065 at 4765.011 kb on + strand, within AMB_RS22065 at 4765.011 kb on + strand, within AMB_RS22065 at 4765.012 kb on - strand, within AMB_RS22065 at 4765.012 kb on - strand, within AMB_RS22065 at 4765.306 kb on + strand, within AMB_RS22065 at 4765.306 kb on + strand, within AMB_RS22065 at 4765.307 kb on - strand, within AMB_RS22065 at 4765.307 kb on - strand, within AMB_RS22065 at 4765.307 kb on - strand, within AMB_RS22065 at 4765.307 kb on - strand, within AMB_RS22065 at 4765.729 kb on + strand at 4765.730 kb on - strand at 4765.788 kb on + strand at 4765.788 kb on + strand at 4765.788 kb on + strand at 4765.788 kb on + strand at 4765.788 kb on + strand at 4765.788 kb on + strand at 4765.790 kb on + strand at 4765.790 kb on + strand at 4765.790 kb on + strand at 4765.790 kb on + strand at 4765.790 kb on + strand at 4765.790 kb on + strand at 4765.790 kb on + strand at 4765.790 kb on + strand at 4765.822 kb on + strand at 4765.822 kb on + strand at 4765.822 kb on + strand at 4765.822 kb on + strand at 4765.822 kb on + strand at 4765.822 kb on + strand at 4768.131 kb on + strand at 4768.131 kb on + strand at 4768.131 kb on + strand at 4768.131 kb on + strand at 4768.306 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_mag_1 remove 4,765,005 + AMB_RS22065 0.41 -1.3 4,765,005 + AMB_RS22065 0.41 -0.9 4,765,005 + AMB_RS22065 0.41 -0.3 4,765,006 - AMB_RS22065 0.41 -0.3 4,765,006 - AMB_RS22065 0.41 -1.1 4,765,009 + AMB_RS22065 0.41 +0.1 4,765,009 + AMB_RS22065 0.41 -0.7 4,765,009 + AMB_RS22065 0.41 -0.3 4,765,009 + AMB_RS22065 0.41 -0.5 4,765,009 + AMB_RS22065 0.41 -1.5 4,765,009 + AMB_RS22065 0.41 -0.2 4,765,009 + AMB_RS22065 0.41 -0.5 4,765,009 + AMB_RS22065 0.41 -0.1 4,765,009 + AMB_RS22065 0.41 -0.3 4,765,009 + AMB_RS22065 0.41 +0.4 4,765,010 - AMB_RS22065 0.41 -0.4 4,765,010 - AMB_RS22065 0.41 -0.7 4,765,010 - AMB_RS22065 0.41 -0.0 4,765,010 - AMB_RS22065 0.41 -0.1 4,765,010 - AMB_RS22065 0.41 -0.7 4,765,010 - AMB_RS22065 0.41 -1.0 4,765,010 - AMB_RS22065 0.41 -0.6 4,765,010 - AMB_RS22065 0.41 -0.3 4,765,010 - AMB_RS22065 0.41 -0.6 4,765,010 - AMB_RS22065 0.41 -1.3 4,765,010 - AMB_RS22065 0.41 +0.9 4,765,010 - AMB_RS22065 0.41 -0.3 4,765,011 + AMB_RS22065 0.41 -1.4 4,765,011 + AMB_RS22065 0.41 -0.7 4,765,011 + AMB_RS22065 0.41 +0.2 4,765,011 + AMB_RS22065 0.41 -2.6 4,765,012 - AMB_RS22065 0.41 -1.4 4,765,012 - AMB_RS22065 0.41 +0.1 4,765,306 + AMB_RS22065 0.66 -0.5 4,765,306 + AMB_RS22065 0.66 -0.1 4,765,307 - AMB_RS22065 0.66 -0.0 4,765,307 - AMB_RS22065 0.66 -0.5 4,765,307 - AMB_RS22065 0.66 +0.0 4,765,307 - AMB_RS22065 0.66 -0.7 4,765,729 + +0.6 4,765,730 - +0.9 4,765,788 + -0.9 4,765,788 + -0.4 4,765,788 + -1.6 4,765,788 + -0.1 4,765,788 + -0.8 4,765,788 + -0.3 4,765,790 + -1.3 4,765,790 + -0.4 4,765,790 + -0.0 4,765,790 + -0.4 4,765,790 + -0.7 4,765,790 + -0.8 4,765,790 + -0.8 4,765,790 + -1.3 4,765,822 + -0.4 4,765,822 + -0.5 4,765,822 + -0.5 4,765,822 + -0.5 4,765,822 + -0.7 4,765,822 + -0.4 4,768,131 + -0.7 4,768,131 + -0.5 4,768,131 + -0.2 4,768,131 + -0.5 4,768,306 + +0.8
Or see this region's nucleotide sequence