Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19660

Experiment: 150_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS19650 and AMB_RS19655 are separated by 1 nucleotidesAMB_RS19655 and AMB_RS19660 overlap by 11 nucleotidesAMB_RS19660 and AMB_RS19665 are separated by 235 nucleotidesAMB_RS19665 and AMB_RS19670 are separated by 3 nucleotides AMB_RS19650: AMB_RS19650 - L-aspartate oxidase, at 4,291,235 to 4,292,854 _RS19650 AMB_RS19655: AMB_RS19655 - nicotinate-nucleotide diphosphorylase (carboxylating), at 4,292,856 to 4,293,716 _RS19655 AMB_RS19660: AMB_RS19660 - quinolinate synthase NadA, at 4,293,706 to 4,294,692 _RS19660 AMB_RS19665: AMB_RS19665 - response regulator, at 4,294,928 to 4,295,362 _RS19665 AMB_RS19670: AMB_RS19670 - metal-transporting ATPase, at 4,295,366 to 4,297,975 _RS19670 Position (kb) 4293 4294 4295Strain fitness (log2 ratio) -2 -1 0 1at 4294.772 kb on - strandat 4294.783 kb on - strandat 4294.783 kb on - strandat 4294.856 kb on + strandat 4294.856 kb on + strandat 4294.856 kb on + strandat 4294.856 kb on + strandat 4294.856 kb on + strandat 4294.856 kb on + strandat 4294.857 kb on - strandat 4294.857 kb on - strandat 4294.857 kb on - strandat 4294.857 kb on - strandat 4294.859 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_1
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4,294,772 - -0.5
4,294,783 - -0.7
4,294,783 - -0.1
4,294,856 + -0.9
4,294,856 + +0.6
4,294,856 + +0.5
4,294,856 + +1.1
4,294,856 + -0.4
4,294,856 + -0.4
4,294,857 - -0.7
4,294,857 - -2.0
4,294,857 - -0.4
4,294,857 - -0.6
4,294,859 - -0.4

Or see this region's nucleotide sequence