Experiment: 150_mag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS19650 and AMB_RS19655 are separated by 1 nucleotides AMB_RS19655 and AMB_RS19660 overlap by 11 nucleotides AMB_RS19660 and AMB_RS19665 are separated by 235 nucleotides AMB_RS19665 and AMB_RS19670 are separated by 3 nucleotides
AMB_RS19650: AMB_RS19650 - L-aspartate oxidase, at 4,291,235 to 4,292,854
_RS19650
AMB_RS19655: AMB_RS19655 - nicotinate-nucleotide diphosphorylase (carboxylating), at 4,292,856 to 4,293,716
_RS19655
AMB_RS19660: AMB_RS19660 - quinolinate synthase NadA, at 4,293,706 to 4,294,692
_RS19660
AMB_RS19665: AMB_RS19665 - response regulator, at 4,294,928 to 4,295,362
_RS19665
AMB_RS19670: AMB_RS19670 - metal-transporting ATPase, at 4,295,366 to 4,297,975
_RS19670
Position (kb)
4293
4294
4295 Strain fitness (log2 ratio)
-2
-1
0
1 at 4294.772 kb on - strand at 4294.783 kb on - strand at 4294.783 kb on - strand at 4294.856 kb on + strand at 4294.856 kb on + strand at 4294.856 kb on + strand at 4294.856 kb on + strand at 4294.856 kb on + strand at 4294.856 kb on + strand at 4294.857 kb on - strand at 4294.857 kb on - strand at 4294.857 kb on - strand at 4294.857 kb on - strand at 4294.859 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_mag_1 remove 4,294,772 - -0.5 4,294,783 - -0.7 4,294,783 - -0.1 4,294,856 + -0.9 4,294,856 + +0.6 4,294,856 + +0.5 4,294,856 + +1.1 4,294,856 + -0.4 4,294,856 + -0.4 4,294,857 - -0.7 4,294,857 - -2.0 4,294,857 - -0.4 4,294,857 - -0.6 4,294,859 - -0.4
Or see this region's nucleotide sequence