Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19155

Experiment: 150_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS19150 and AMB_RS19155 are separated by 34 nucleotidesAMB_RS19155 and AMB_RS19160 are separated by 128 nucleotides AMB_RS19150: AMB_RS19150 - IMP dehydrogenase, at 4,163,225 to 4,164,685 _RS19150 AMB_RS19155: AMB_RS19155 - amino acid ABC transporter substrate-binding protein, at 4,164,720 to 4,165,628 _RS19155 AMB_RS19160: AMB_RS19160 - methyltransferase domain-containing protein, at 4,165,757 to 4,167,079 _RS19160 Position (kb) 4164 4165 4166Strain fitness (log2 ratio) -3 -2 -1 0 1at 4164.671 kb on + strandat 4164.672 kb on - strandat 4164.672 kb on - strandat 4164.683 kb on + strandat 4164.684 kb on - strandat 4164.722 kb on - strandat 4164.850 kb on + strand, within AMB_RS19155at 4164.851 kb on - strand, within AMB_RS19155at 4165.142 kb on + strand, within AMB_RS19155at 4165.143 kb on - strand, within AMB_RS19155at 4165.208 kb on + strand, within AMB_RS19155at 4165.209 kb on - strand, within AMB_RS19155at 4165.255 kb on + strand, within AMB_RS19155at 4165.255 kb on + strand, within AMB_RS19155at 4165.255 kb on + strand, within AMB_RS19155at 4165.255 kb on + strand, within AMB_RS19155at 4165.255 kb on + strand, within AMB_RS19155at 4165.255 kb on + strand, within AMB_RS19155at 4165.255 kb on + strand, within AMB_RS19155at 4165.256 kb on - strand, within AMB_RS19155at 4165.256 kb on - strand, within AMB_RS19155at 4165.256 kb on - strand, within AMB_RS19155at 4165.256 kb on - strand, within AMB_RS19155at 4165.256 kb on - strand, within AMB_RS19155at 4165.256 kb on - strand, within AMB_RS19155at 4165.298 kb on + strand, within AMB_RS19155at 4165.299 kb on - strand, within AMB_RS19155at 4165.587 kb on + strandat 4165.587 kb on + strandat 4165.587 kb on + strandat 4165.643 kb on - strandat 4165.648 kb on + strandat 4165.649 kb on - strandat 4165.662 kb on + strandat 4165.663 kb on - strandat 4165.663 kb on - strandat 4165.666 kb on + strandat 4165.666 kb on + strandat 4165.691 kb on + strandat 4165.692 kb on - strandat 4165.712 kb on - strandat 4165.748 kb on + strandat 4165.748 kb on + strandat 4165.748 kb on + strandat 4165.748 kb on + strandat 4165.748 kb on + strandat 4165.748 kb on + strandat 4165.749 kb on - strandat 4165.749 kb on - strandat 4165.749 kb on - strandat 4165.749 kb on - strandat 4165.757 kb on - strandat 4165.848 kb on - strandat 4165.848 kb on - strandat 4165.866 kb on - strandat 4165.866 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_1
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4,164,671 + +0.4
4,164,672 - +0.2
4,164,672 - +0.1
4,164,683 + -0.7
4,164,684 - -2.0
4,164,722 - -1.2
4,164,850 + AMB_RS19155 0.14 -0.2
4,164,851 - AMB_RS19155 0.14 -0.2
4,165,142 + AMB_RS19155 0.46 +1.4
4,165,143 - AMB_RS19155 0.47 +1.0
4,165,208 + AMB_RS19155 0.54 -0.2
4,165,209 - AMB_RS19155 0.54 -0.4
4,165,255 + AMB_RS19155 0.59 +0.1
4,165,255 + AMB_RS19155 0.59 -0.3
4,165,255 + AMB_RS19155 0.59 +0.8
4,165,255 + AMB_RS19155 0.59 -1.6
4,165,255 + AMB_RS19155 0.59 +0.5
4,165,255 + AMB_RS19155 0.59 -0.1
4,165,255 + AMB_RS19155 0.59 -0.6
4,165,256 - AMB_RS19155 0.59 +0.0
4,165,256 - AMB_RS19155 0.59 -0.8
4,165,256 - AMB_RS19155 0.59 -2.2
4,165,256 - AMB_RS19155 0.59 -0.6
4,165,256 - AMB_RS19155 0.59 +1.1
4,165,256 - AMB_RS19155 0.59 -1.1
4,165,298 + AMB_RS19155 0.64 -0.4
4,165,299 - AMB_RS19155 0.64 -0.9
4,165,587 + -0.3
4,165,587 + -0.1
4,165,587 + +0.9
4,165,643 - +0.2
4,165,648 + +0.4
4,165,649 - -0.9
4,165,662 + +0.7
4,165,663 - +0.9
4,165,663 - -1.3
4,165,666 + -1.3
4,165,666 + -1.3
4,165,691 + +1.1
4,165,692 - -1.0
4,165,712 - -1.4
4,165,748 + +1.7
4,165,748 + +0.6
4,165,748 + +1.2
4,165,748 + +1.7
4,165,748 + -2.9
4,165,748 + -0.0
4,165,749 - -0.3
4,165,749 - -0.2
4,165,749 - +0.4
4,165,749 - +0.6
4,165,757 - +0.3
4,165,848 - +0.9
4,165,848 - -0.4
4,165,866 - -0.7
4,165,866 - -3.0

Or see this region's nucleotide sequence