Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS16305

Experiment: 150_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS16295 and AMB_RS16300 overlap by 4 nucleotidesAMB_RS16300 and AMB_RS16305 are separated by 76 nucleotidesAMB_RS16305 and AMB_RS16310 are separated by 139 nucleotidesAMB_RS16310 and AMB_RS16315 are separated by 64 nucleotides AMB_RS16295: AMB_RS16295 - DUF3124 domain-containing protein, at 3,488,947 to 3,489,450 _RS16295 AMB_RS16300: AMB_RS16300 - hypothetical protein, at 3,489,447 to 3,489,773 _RS16300 AMB_RS16305: AMB_RS16305 - electron transfer flavoprotein subunit alpha, at 3,489,850 to 3,490,788 _RS16305 AMB_RS16310: AMB_RS16310 - electron transfer flavoprotein subunit beta/FixA family protein, at 3,490,928 to 3,491,677 _RS16310 AMB_RS16315: AMB_RS16315 - acyl-CoA dehydrogenase, at 3,491,742 to 3,492,920 _RS16315 Position (kb) 3489 3490 3491Strain fitness (log2 ratio) -1 0 1at 3488.908 kb on + strandat 3489.791 kb on + strandat 3489.791 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_1
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3,488,908 + +0.2
3,489,791 + +0.4
3,489,791 + -1.2

Or see this region's nucleotide sequence