Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS15780

Experiment: 150_mag_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS15770 and AMB_RS15775 are separated by 11 nucleotidesAMB_RS15775 and AMB_RS15780 are separated by 285 nucleotidesAMB_RS15780 and AMB_RS15785 are separated by 32 nucleotides AMB_RS15770: AMB_RS15770 - 50S ribosomal protein L3, at 3,376,138 to 3,376,827 _RS15770 AMB_RS15775: AMB_RS15775 - 30S ribosomal protein S10, at 3,376,839 to 3,377,147 _RS15775 AMB_RS15780: AMB_RS15780 - elongation factor Tu, at 3,377,433 to 3,378,623 _RS15780 AMB_RS15785: AMB_RS15785 - elongation factor G, at 3,378,656 to 3,380,740 _RS15785 Position (kb) 3377 3378 3379Strain fitness (log2 ratio) -1 0 1at 3378.645 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_1
remove
3,378,645 + -0.7

Or see this region's nucleotide sequence