Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS14890

Experiment: 150_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS14885 and AMB_RS14890 are separated by 51 nucleotidesAMB_RS14890 and AMB_RS14895 are separated by 29 nucleotides AMB_RS14885: AMB_RS14885 - VWA domain-containing protein, at 3,161,556 to 3,163,814 _RS14885 AMB_RS14890: AMB_RS14890 - hypothetical protein, at 3,163,866 to 3,167,267 _RS14890 AMB_RS14895: AMB_RS14895 - VWA domain-containing protein, at 3,167,297 to 3,170,887 _RS14895 Position (kb) 3163 3164 3165 3166 3167 3168Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3163.195 kb on + strand, within AMB_RS14885at 3163.407 kb on + strand, within AMB_RS14885at 3163.408 kb on - strand, within AMB_RS14885at 3163.674 kb on + strandat 3163.675 kb on - strandat 3163.830 kb on - strandat 3163.861 kb on + strandat 3163.862 kb on - strandat 3163.862 kb on - strandat 3163.862 kb on - strandat 3163.944 kb on + strandat 3163.944 kb on + strandat 3163.945 kb on - strandat 3164.027 kb on + strandat 3164.070 kb on + strandat 3164.070 kb on + strandat 3164.070 kb on + strandat 3164.433 kb on - strand, within AMB_RS14890at 3164.433 kb on - strand, within AMB_RS14890at 3164.433 kb on - strand, within AMB_RS14890at 3164.433 kb on - strand, within AMB_RS14890at 3164.448 kb on + strand, within AMB_RS14890at 3164.449 kb on - strand, within AMB_RS14890at 3164.449 kb on - strand, within AMB_RS14890at 3164.527 kb on - strand, within AMB_RS14890at 3164.527 kb on - strand, within AMB_RS14890at 3164.527 kb on - strand, within AMB_RS14890at 3164.562 kb on + strand, within AMB_RS14890at 3164.562 kb on + strand, within AMB_RS14890at 3164.562 kb on + strand, within AMB_RS14890at 3164.563 kb on - strand, within AMB_RS14890at 3164.613 kb on + strand, within AMB_RS14890at 3164.614 kb on - strand, within AMB_RS14890at 3164.662 kb on - strand, within AMB_RS14890at 3164.662 kb on - strand, within AMB_RS14890at 3164.796 kb on + strand, within AMB_RS14890at 3164.796 kb on + strand, within AMB_RS14890at 3164.797 kb on - strand, within AMB_RS14890at 3164.901 kb on + strand, within AMB_RS14890at 3164.901 kb on + strand, within AMB_RS14890at 3164.901 kb on + strand, within AMB_RS14890at 3164.901 kb on + strand, within AMB_RS14890at 3164.902 kb on - strand, within AMB_RS14890at 3165.154 kb on - strand, within AMB_RS14890at 3165.154 kb on - strand, within AMB_RS14890at 3165.154 kb on - strand, within AMB_RS14890at 3165.210 kb on + strand, within AMB_RS14890at 3165.210 kb on + strand, within AMB_RS14890at 3165.210 kb on + strand, within AMB_RS14890at 3165.210 kb on + strand, within AMB_RS14890at 3165.211 kb on - strand, within AMB_RS14890at 3165.211 kb on - strand, within AMB_RS14890at 3165.229 kb on - strand, within AMB_RS14890at 3165.284 kb on + strand, within AMB_RS14890at 3165.300 kb on + strand, within AMB_RS14890at 3165.300 kb on + strand, within AMB_RS14890at 3165.300 kb on + strand, within AMB_RS14890at 3165.300 kb on + strand, within AMB_RS14890at 3165.300 kb on + strand, within AMB_RS14890at 3165.300 kb on + strand, within AMB_RS14890at 3165.300 kb on + strand, within AMB_RS14890at 3165.301 kb on - strand, within AMB_RS14890at 3165.301 kb on - strand, within AMB_RS14890at 3165.301 kb on - strand, within AMB_RS14890at 3165.301 kb on - strand, within AMB_RS14890at 3165.393 kb on + strand, within AMB_RS14890at 3165.393 kb on + strand, within AMB_RS14890at 3165.393 kb on + strand, within AMB_RS14890at 3165.393 kb on + strand, within AMB_RS14890at 3165.394 kb on - strand, within AMB_RS14890at 3165.629 kb on + strand, within AMB_RS14890at 3165.629 kb on + strand, within AMB_RS14890at 3165.629 kb on + strand, within AMB_RS14890at 3165.630 kb on - strand, within AMB_RS14890at 3165.786 kb on + strand, within AMB_RS14890at 3165.786 kb on + strand, within AMB_RS14890at 3165.786 kb on + strand, within AMB_RS14890at 3165.787 kb on - strand, within AMB_RS14890at 3166.041 kb on - strand, within AMB_RS14890at 3166.302 kb on + strand, within AMB_RS14890at 3166.302 kb on + strand, within AMB_RS14890at 3166.302 kb on + strand, within AMB_RS14890at 3166.303 kb on - strand, within AMB_RS14890at 3166.303 kb on - strand, within AMB_RS14890at 3166.410 kb on + strand, within AMB_RS14890at 3166.410 kb on + strand, within AMB_RS14890at 3166.410 kb on + strand, within AMB_RS14890at 3166.411 kb on - strand, within AMB_RS14890at 3166.599 kb on + strand, within AMB_RS14890at 3166.599 kb on + strand, within AMB_RS14890at 3166.600 kb on - strand, within AMB_RS14890at 3166.600 kb on - strand, within AMB_RS14890at 3166.600 kb on - strand, within AMB_RS14890at 3166.600 kb on - strand, within AMB_RS14890at 3166.671 kb on + strand, within AMB_RS14890at 3166.671 kb on + strand, within AMB_RS14890at 3166.672 kb on - strand, within AMB_RS14890at 3166.672 kb on - strand, within AMB_RS14890at 3166.672 kb on - strand, within AMB_RS14890at 3166.763 kb on + strand, within AMB_RS14890at 3166.764 kb on - strand, within AMB_RS14890at 3166.764 kb on - strand, within AMB_RS14890at 3167.187 kb on - strandat 3167.220 kb on + strandat 3167.220 kb on + strandat 3167.221 kb on - strandat 3167.221 kb on - strandat 3167.221 kb on - strandat 3167.221 kb on - strandat 3167.411 kb on + strandat 3167.412 kb on - strandat 3167.412 kb on - strandat 3167.412 kb on - strandat 3167.412 kb on - strandat 3167.515 kb on + strandat 3167.958 kb on + strand, within AMB_RS14895at 3168.262 kb on + strand, within AMB_RS14895at 3168.262 kb on + strand, within AMB_RS14895

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_1
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3,163,195 + AMB_RS14885 0.73 -1.0
3,163,407 + AMB_RS14885 0.82 +0.4
3,163,408 - AMB_RS14885 0.82 +1.8
3,163,674 + -0.8
3,163,675 - +0.6
3,163,830 - -0.4
3,163,861 + -0.3
3,163,862 - -0.7
3,163,862 - +0.4
3,163,862 - -1.2
3,163,944 + -0.0
3,163,944 + -0.2
3,163,945 - -0.1
3,164,027 + -0.1
3,164,070 + -0.9
3,164,070 + -1.2
3,164,070 + -1.1
3,164,433 - AMB_RS14890 0.17 +0.0
3,164,433 - AMB_RS14890 0.17 -0.9
3,164,433 - AMB_RS14890 0.17 +0.2
3,164,433 - AMB_RS14890 0.17 -1.1
3,164,448 + AMB_RS14890 0.17 -1.7
3,164,449 - AMB_RS14890 0.17 +0.8
3,164,449 - AMB_RS14890 0.17 -1.7
3,164,527 - AMB_RS14890 0.19 +0.9
3,164,527 - AMB_RS14890 0.19 +0.5
3,164,527 - AMB_RS14890 0.19 +0.2
3,164,562 + AMB_RS14890 0.20 +0.6
3,164,562 + AMB_RS14890 0.20 -0.6
3,164,562 + AMB_RS14890 0.20 +0.4
3,164,563 - AMB_RS14890 0.20 -0.4
3,164,613 + AMB_RS14890 0.22 +0.9
3,164,614 - AMB_RS14890 0.22 -0.4
3,164,662 - AMB_RS14890 0.23 +0.3
3,164,662 - AMB_RS14890 0.23 +0.1
3,164,796 + AMB_RS14890 0.27 +0.0
3,164,796 + AMB_RS14890 0.27 +0.4
3,164,797 - AMB_RS14890 0.27 -0.9
3,164,901 + AMB_RS14890 0.30 +0.3
3,164,901 + AMB_RS14890 0.30 +0.6
3,164,901 + AMB_RS14890 0.30 -0.4
3,164,901 + AMB_RS14890 0.30 -0.0
3,164,902 - AMB_RS14890 0.30 -0.4
3,165,154 - AMB_RS14890 0.38 +0.5
3,165,154 - AMB_RS14890 0.38 -0.6
3,165,154 - AMB_RS14890 0.38 +0.4
3,165,210 + AMB_RS14890 0.40 -0.1
3,165,210 + AMB_RS14890 0.40 +0.5
3,165,210 + AMB_RS14890 0.40 -0.9
3,165,210 + AMB_RS14890 0.40 -1.6
3,165,211 - AMB_RS14890 0.40 +0.1
3,165,211 - AMB_RS14890 0.40 -0.5
3,165,229 - AMB_RS14890 0.40 -0.3
3,165,284 + AMB_RS14890 0.42 +3.1
3,165,300 + AMB_RS14890 0.42 -0.8
3,165,300 + AMB_RS14890 0.42 +0.6
3,165,300 + AMB_RS14890 0.42 -0.6
3,165,300 + AMB_RS14890 0.42 -0.2
3,165,300 + AMB_RS14890 0.42 +0.0
3,165,300 + AMB_RS14890 0.42 +1.6
3,165,300 + AMB_RS14890 0.42 +1.0
3,165,301 - AMB_RS14890 0.42 +0.3
3,165,301 - AMB_RS14890 0.42 -0.3
3,165,301 - AMB_RS14890 0.42 +1.4
3,165,301 - AMB_RS14890 0.42 -1.4
3,165,393 + AMB_RS14890 0.45 -1.0
3,165,393 + AMB_RS14890 0.45 -0.1
3,165,393 + AMB_RS14890 0.45 -1.4
3,165,393 + AMB_RS14890 0.45 +0.0
3,165,394 - AMB_RS14890 0.45 -0.1
3,165,629 + AMB_RS14890 0.52 -0.2
3,165,629 + AMB_RS14890 0.52 +0.6
3,165,629 + AMB_RS14890 0.52 -0.0
3,165,630 - AMB_RS14890 0.52 -0.1
3,165,786 + AMB_RS14890 0.56 -0.2
3,165,786 + AMB_RS14890 0.56 +0.1
3,165,786 + AMB_RS14890 0.56 +0.3
3,165,787 - AMB_RS14890 0.56 -0.7
3,166,041 - AMB_RS14890 0.64 -0.4
3,166,302 + AMB_RS14890 0.72 -0.2
3,166,302 + AMB_RS14890 0.72 +0.7
3,166,302 + AMB_RS14890 0.72 -1.9
3,166,303 - AMB_RS14890 0.72 -1.3
3,166,303 - AMB_RS14890 0.72 -1.1
3,166,410 + AMB_RS14890 0.75 +0.3
3,166,410 + AMB_RS14890 0.75 -0.6
3,166,410 + AMB_RS14890 0.75 -0.5
3,166,411 - AMB_RS14890 0.75 -0.2
3,166,599 + AMB_RS14890 0.80 +0.1
3,166,599 + AMB_RS14890 0.80 +0.6
3,166,600 - AMB_RS14890 0.80 -0.3
3,166,600 - AMB_RS14890 0.80 -0.7
3,166,600 - AMB_RS14890 0.80 -1.7
3,166,600 - AMB_RS14890 0.80 +0.0
3,166,671 + AMB_RS14890 0.82 +0.6
3,166,671 + AMB_RS14890 0.82 -0.9
3,166,672 - AMB_RS14890 0.82 -0.1
3,166,672 - AMB_RS14890 0.82 +1.3
3,166,672 - AMB_RS14890 0.82 -1.0
3,166,763 + AMB_RS14890 0.85 -0.1
3,166,764 - AMB_RS14890 0.85 -0.4
3,166,764 - AMB_RS14890 0.85 +0.7
3,167,187 - +0.6
3,167,220 + +0.1
3,167,220 + -0.1
3,167,221 - -0.3
3,167,221 - -0.1
3,167,221 - +0.2
3,167,221 - -0.9
3,167,411 + -1.7
3,167,412 - -0.5
3,167,412 - -0.1
3,167,412 - -0.1
3,167,412 - +0.6
3,167,515 + -0.3
3,167,958 + AMB_RS14895 0.18 -0.0
3,168,262 + AMB_RS14895 0.27 -1.1
3,168,262 + AMB_RS14895 0.27 -0.6

Or see this region's nucleotide sequence