Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS12305

Experiment: 150_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS12300 and AMB_RS12305 are separated by 32 nucleotidesAMB_RS12305 and AMB_RS12310 overlap by 4 nucleotidesAMB_RS12310 and AMB_RS12315 are separated by 5 nucleotides AMB_RS12300: AMB_RS12300 - methionine--tRNA ligase, at 2,623,962 to 2,625,512 _RS12300 AMB_RS12305: AMB_RS12305 - DNA polymerase III subunit delta', at 2,625,545 to 2,626,636 _RS12305 AMB_RS12310: AMB_RS12310 - dTMP kinase, at 2,626,633 to 2,627,271 _RS12310 AMB_RS12315: AMB_RS12315 - D-alanyl-D-alanine carboxypeptidase, at 2,627,277 to 2,628,440 _RS12315 Position (kb) 2625 2626 2627Strain fitness (log2 ratio) -1 0 1at 2627.459 kb on - strand, within AMB_RS12315at 2627.459 kb on - strand, within AMB_RS12315at 2627.459 kb on - strand, within AMB_RS12315at 2627.606 kb on - strand, within AMB_RS12315at 2627.606 kb on - strand, within AMB_RS12315at 2627.606 kb on - strand, within AMB_RS12315at 2627.606 kb on - strand, within AMB_RS12315

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_1
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2,627,459 - AMB_RS12315 0.16 -0.3
2,627,459 - AMB_RS12315 0.16 +0.4
2,627,459 - AMB_RS12315 0.16 -1.0
2,627,606 - AMB_RS12315 0.28 -1.0
2,627,606 - AMB_RS12315 0.28 +0.1
2,627,606 - AMB_RS12315 0.28 +0.7
2,627,606 - AMB_RS12315 0.28 -0.6

Or see this region's nucleotide sequence