Experiment: 150_mag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS09140 and AMB_RS09145 are separated by 46 nucleotides AMB_RS09145 and AMB_RS09150 overlap by 4 nucleotides AMB_RS09150 and AMB_RS09155 are separated by 87 nucleotides
AMB_RS09140: AMB_RS09140 - methyl-accepting chemotaxis protein, at 1,945,477 to 1,947,156
_RS09140
AMB_RS09145: AMB_RS09145 - copper-translocating P-type ATPase, at 1,947,203 to 1,949,410
_RS09145
AMB_RS09150: AMB_RS09150 - Cu(I)-responsive transcriptional regulator, at 1,949,407 to 1,949,799
_RS09150
AMB_RS09155: AMB_RS09155 - divergent polysaccharide deacetylase family protein, at 1,949,887 to 1,950,987
_RS09155
Position (kb) 1947
1948
1949
1950 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1949.412 kb on + strand at 1949.461 kb on + strand, within AMB_RS09150 at 1949.462 kb on - strand, within AMB_RS09150 at 1949.522 kb on - strand, within AMB_RS09150 at 1949.523 kb on + strand, within AMB_RS09150 at 1949.827 kb on + strand at 1949.827 kb on + strand at 1949.827 kb on + strand at 1949.859 kb on + strand at 1950.406 kb on + strand, within AMB_RS09155 at 1950.406 kb on + strand, within AMB_RS09155 at 1950.407 kb on - strand, within AMB_RS09155 at 1950.407 kb on - strand, within AMB_RS09155 at 1950.407 kb on - strand, within AMB_RS09155 at 1950.407 kb on - strand, within AMB_RS09155 at 1950.407 kb on - strand, within AMB_RS09155
Per-strain Table
Position Strand Gene LocusTag Fraction 150_mag_1 remove 1,949,412 + -0.2 1,949,461 + AMB_RS09150 0.14 -0.4 1,949,462 - AMB_RS09150 0.14 -2.4 1,949,522 - AMB_RS09150 0.29 -0.3 1,949,523 + AMB_RS09150 0.30 -1.6 1,949,827 + -0.5 1,949,827 + +0.8 1,949,827 + +1.9 1,949,859 + -0.2 1,950,406 + AMB_RS09155 0.47 -0.3 1,950,406 + AMB_RS09155 0.47 -0.4 1,950,407 - AMB_RS09155 0.47 +0.1 1,950,407 - AMB_RS09155 0.47 -1.7 1,950,407 - AMB_RS09155 0.47 -0.8 1,950,407 - AMB_RS09155 0.47 -0.0 1,950,407 - AMB_RS09155 0.47 -2.0
Or see this region's nucleotide sequence