Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07985

Experiment: 150_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS07965 and AMB_RS07970 are separated by 5 nucleotidesAMB_RS07970 and AMB_RS07975 overlap by 4 nucleotidesAMB_RS07975 and AMB_RS07980 are separated by 80 nucleotidesAMB_RS07980 and AMB_RS07985 are separated by 20 nucleotidesAMB_RS07985 and AMB_RS07990 are separated by 148 nucleotides AMB_RS07965: AMB_RS07965 - SIR2 family protein, at 1,710,070 to 1,710,942 _RS07965 AMB_RS07970: AMB_RS07970 - putative nitrogen fixation protein NifT, at 1,710,948 to 1,711,163 _RS07970 AMB_RS07975: AMB_RS07975 - nitrogen fixation protein NifZ, at 1,711,160 to 1,711,441 _RS07975 AMB_RS07980: AMB_RS07980 - 4Fe-4S ferredoxin, at 1,711,522 to 1,711,710 _RS07980 AMB_RS07985: AMB_RS07985 - nitrogenase cofactor biosynthesis protein NifB, at 1,711,731 to 1,713,227 _RS07985 AMB_RS07990: AMB_RS07990 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit B, at 1,713,376 to 1,714,833 _RS07990 Position (kb) 1711 1712 1713 1714Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1710.742 kb on - strand, within AMB_RS07965at 1711.120 kb on + strand, within AMB_RS07970at 1711.120 kb on + strand, within AMB_RS07970at 1711.120 kb on + strand, within AMB_RS07970at 1711.120 kb on + strand, within AMB_RS07970at 1711.120 kb on + strand, within AMB_RS07970at 1711.120 kb on + strand, within AMB_RS07970at 1711.121 kb on - strand, within AMB_RS07970at 1711.121 kb on - strand, within AMB_RS07970at 1711.251 kb on + strand, within AMB_RS07975at 1711.251 kb on + strand, within AMB_RS07975at 1711.252 kb on - strand, within AMB_RS07975at 1711.257 kb on + strand, within AMB_RS07975at 1711.257 kb on + strand, within AMB_RS07975at 1711.257 kb on + strand, within AMB_RS07975at 1711.257 kb on + strand, within AMB_RS07975at 1711.257 kb on + strand, within AMB_RS07975at 1711.257 kb on + strand, within AMB_RS07975at 1711.257 kb on + strand, within AMB_RS07975at 1711.258 kb on - strand, within AMB_RS07975at 1711.258 kb on - strand, within AMB_RS07975at 1711.258 kb on - strand, within AMB_RS07975at 1711.258 kb on - strand, within AMB_RS07975at 1711.272 kb on + strand, within AMB_RS07975at 1711.272 kb on + strand, within AMB_RS07975at 1711.273 kb on - strand, within AMB_RS07975at 1711.273 kb on - strand, within AMB_RS07975at 1711.273 kb on - strand, within AMB_RS07975at 1711.293 kb on + strand, within AMB_RS07975at 1711.293 kb on + strand, within AMB_RS07975at 1711.294 kb on - strand, within AMB_RS07975at 1711.399 kb on - strand, within AMB_RS07975at 1711.399 kb on - strand, within AMB_RS07975at 1711.399 kb on - strand, within AMB_RS07975at 1711.616 kb on + strand, within AMB_RS07980at 1711.616 kb on + strand, within AMB_RS07980at 1711.616 kb on + strand, within AMB_RS07980at 1711.617 kb on - strand, within AMB_RS07980at 1711.617 kb on - strand, within AMB_RS07980at 1711.777 kb on + strandat 1711.804 kb on + strandat 1711.804 kb on + strandat 1711.805 kb on - strandat 1711.917 kb on + strand, within AMB_RS07985at 1711.917 kb on + strand, within AMB_RS07985at 1711.918 kb on - strand, within AMB_RS07985at 1711.946 kb on - strand, within AMB_RS07985at 1711.960 kb on + strand, within AMB_RS07985at 1711.960 kb on + strand, within AMB_RS07985at 1711.960 kb on + strand, within AMB_RS07985at 1711.960 kb on + strand, within AMB_RS07985at 1712.441 kb on + strand, within AMB_RS07985at 1712.441 kb on + strand, within AMB_RS07985at 1712.441 kb on + strand, within AMB_RS07985at 1712.442 kb on - strand, within AMB_RS07985at 1712.442 kb on - strand, within AMB_RS07985at 1712.442 kb on - strand, within AMB_RS07985at 1712.442 kb on - strand, within AMB_RS07985at 1712.614 kb on + strand, within AMB_RS07985at 1712.632 kb on + strand, within AMB_RS07985at 1712.632 kb on + strand, within AMB_RS07985at 1712.633 kb on - strand, within AMB_RS07985at 1712.644 kb on + strand, within AMB_RS07985at 1712.644 kb on + strand, within AMB_RS07985at 1712.764 kb on + strand, within AMB_RS07985at 1712.764 kb on + strand, within AMB_RS07985at 1712.969 kb on - strand, within AMB_RS07985at 1712.969 kb on - strand, within AMB_RS07985at 1712.983 kb on + strand, within AMB_RS07985at 1712.983 kb on + strand, within AMB_RS07985at 1712.983 kb on + strand, within AMB_RS07985at 1712.983 kb on + strand, within AMB_RS07985at 1713.037 kb on + strand, within AMB_RS07985at 1713.037 kb on + strand, within AMB_RS07985at 1713.037 kb on + strand, within AMB_RS07985at 1713.038 kb on - strand, within AMB_RS07985at 1713.038 kb on - strand, within AMB_RS07985at 1713.089 kb on + strandat 1713.089 kb on + strandat 1713.090 kb on - strandat 1713.090 kb on - strandat 1713.251 kb on + strandat 1713.377 kb on + strandat 1713.378 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_1
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1,710,742 - AMB_RS07965 0.77 -0.4
1,711,120 + AMB_RS07970 0.80 -0.5
1,711,120 + AMB_RS07970 0.80 +2.8
1,711,120 + AMB_RS07970 0.80 -1.0
1,711,120 + AMB_RS07970 0.80 +0.2
1,711,120 + AMB_RS07970 0.80 -0.6
1,711,120 + AMB_RS07970 0.80 -0.1
1,711,121 - AMB_RS07970 0.80 +1.4
1,711,121 - AMB_RS07970 0.80 -0.5
1,711,251 + AMB_RS07975 0.32 -0.9
1,711,251 + AMB_RS07975 0.32 -0.6
1,711,252 - AMB_RS07975 0.33 -0.5
1,711,257 + AMB_RS07975 0.34 -1.3
1,711,257 + AMB_RS07975 0.34 -0.5
1,711,257 + AMB_RS07975 0.34 -0.7
1,711,257 + AMB_RS07975 0.34 -0.5
1,711,257 + AMB_RS07975 0.34 -0.4
1,711,257 + AMB_RS07975 0.34 -1.0
1,711,257 + AMB_RS07975 0.34 +0.6
1,711,258 - AMB_RS07975 0.35 -0.5
1,711,258 - AMB_RS07975 0.35 +0.4
1,711,258 - AMB_RS07975 0.35 -0.7
1,711,258 - AMB_RS07975 0.35 +1.6
1,711,272 + AMB_RS07975 0.40 +0.6
1,711,272 + AMB_RS07975 0.40 +0.3
1,711,273 - AMB_RS07975 0.40 -2.2
1,711,273 - AMB_RS07975 0.40 -0.2
1,711,273 - AMB_RS07975 0.40 -1.7
1,711,293 + AMB_RS07975 0.47 -0.5
1,711,293 + AMB_RS07975 0.47 +0.2
1,711,294 - AMB_RS07975 0.48 -1.2
1,711,399 - AMB_RS07975 0.85 -2.9
1,711,399 - AMB_RS07975 0.85 +0.1
1,711,399 - AMB_RS07975 0.85 +0.6
1,711,616 + AMB_RS07980 0.50 +0.7
1,711,616 + AMB_RS07980 0.50 -1.0
1,711,616 + AMB_RS07980 0.50 -0.2
1,711,617 - AMB_RS07980 0.50 +0.8
1,711,617 - AMB_RS07980 0.50 +1.0
1,711,777 + +1.0
1,711,804 + +0.1
1,711,804 + -0.3
1,711,805 - +0.4
1,711,917 + AMB_RS07985 0.12 -0.5
1,711,917 + AMB_RS07985 0.12 -0.4
1,711,918 - AMB_RS07985 0.12 +1.6
1,711,946 - AMB_RS07985 0.14 -0.5
1,711,960 + AMB_RS07985 0.15 +1.4
1,711,960 + AMB_RS07985 0.15 +1.1
1,711,960 + AMB_RS07985 0.15 -1.4
1,711,960 + AMB_RS07985 0.15 -1.7
1,712,441 + AMB_RS07985 0.47 +0.5
1,712,441 + AMB_RS07985 0.47 -3.5
1,712,441 + AMB_RS07985 0.47 -0.5
1,712,442 - AMB_RS07985 0.47 +0.5
1,712,442 - AMB_RS07985 0.47 -1.9
1,712,442 - AMB_RS07985 0.47 -0.5
1,712,442 - AMB_RS07985 0.47 -0.3
1,712,614 + AMB_RS07985 0.59 -0.5
1,712,632 + AMB_RS07985 0.60 +0.1
1,712,632 + AMB_RS07985 0.60 -1.1
1,712,633 - AMB_RS07985 0.60 -0.0
1,712,644 + AMB_RS07985 0.61 -1.7
1,712,644 + AMB_RS07985 0.61 -0.1
1,712,764 + AMB_RS07985 0.69 -0.4
1,712,764 + AMB_RS07985 0.69 -0.4
1,712,969 - AMB_RS07985 0.83 -0.7
1,712,969 - AMB_RS07985 0.83 -0.2
1,712,983 + AMB_RS07985 0.84 -0.1
1,712,983 + AMB_RS07985 0.84 +0.3
1,712,983 + AMB_RS07985 0.84 -3.0
1,712,983 + AMB_RS07985 0.84 -0.8
1,713,037 + AMB_RS07985 0.87 -0.2
1,713,037 + AMB_RS07985 0.87 +0.5
1,713,037 + AMB_RS07985 0.87 +0.2
1,713,038 - AMB_RS07985 0.87 +0.1
1,713,038 - AMB_RS07985 0.87 -0.1
1,713,089 + +0.4
1,713,089 + -0.4
1,713,090 - +0.6
1,713,090 - +0.6
1,713,251 + -0.4
1,713,377 + -0.3
1,713,378 - -1.3

Or see this region's nucleotide sequence