Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07310

Experiment: 150_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS07305 and AMB_RS07310 are separated by 52 nucleotidesAMB_RS07310 and AMB_RS07315 are separated by 56 nucleotidesAMB_RS07315 and AMB_RS07320 overlap by 29 nucleotides AMB_RS07305: AMB_RS07305 - hypothetical protein, at 1,577,937 to 1,578,722 _RS07305 AMB_RS07310: AMB_RS07310 - hypothetical protein, at 1,578,775 to 1,580,058 _RS07310 AMB_RS07315: AMB_RS07315 - hypothetical protein, at 1,580,115 to 1,580,648 _RS07315 AMB_RS07320: AMB_RS07320 - serine/threonine protein phosphatase, at 1,580,620 to 1,581,441 _RS07320 Position (kb) 1578 1579 1580 1581Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1577.798 kb on + strandat 1577.968 kb on + strandat 1578.317 kb on + strand, within AMB_RS07305at 1578.317 kb on + strand, within AMB_RS07305at 1578.317 kb on + strand, within AMB_RS07305at 1578.708 kb on - strandat 1578.716 kb on + strandat 1578.717 kb on - strandat 1578.727 kb on + strandat 1578.727 kb on + strandat 1578.792 kb on + strandat 1578.792 kb on + strandat 1578.793 kb on - strandat 1578.935 kb on - strand, within AMB_RS07310at 1578.935 kb on - strand, within AMB_RS07310at 1579.016 kb on - strand, within AMB_RS07310at 1579.016 kb on - strand, within AMB_RS07310at 1579.018 kb on + strand, within AMB_RS07310at 1579.018 kb on + strand, within AMB_RS07310at 1579.168 kb on + strand, within AMB_RS07310at 1579.168 kb on + strand, within AMB_RS07310at 1579.169 kb on - strand, within AMB_RS07310at 1579.169 kb on - strand, within AMB_RS07310at 1579.169 kb on - strand, within AMB_RS07310at 1579.169 kb on - strand, within AMB_RS07310at 1579.331 kb on - strand, within AMB_RS07310at 1579.425 kb on + strand, within AMB_RS07310at 1579.425 kb on + strand, within AMB_RS07310at 1579.426 kb on - strand, within AMB_RS07310at 1579.479 kb on + strand, within AMB_RS07310at 1579.490 kb on - strand, within AMB_RS07310at 1579.509 kb on + strand, within AMB_RS07310at 1579.509 kb on + strand, within AMB_RS07310at 1579.513 kb on + strand, within AMB_RS07310at 1579.513 kb on + strand, within AMB_RS07310at 1579.513 kb on + strand, within AMB_RS07310at 1579.514 kb on - strand, within AMB_RS07310at 1579.516 kb on - strand, within AMB_RS07310at 1579.652 kb on - strand, within AMB_RS07310at 1579.652 kb on - strand, within AMB_RS07310at 1579.654 kb on + strand, within AMB_RS07310at 1579.654 kb on + strand, within AMB_RS07310at 1579.654 kb on + strand, within AMB_RS07310at 1579.655 kb on - strand, within AMB_RS07310at 1579.655 kb on - strand, within AMB_RS07310at 1579.655 kb on - strand, within AMB_RS07310at 1579.655 kb on - strand, within AMB_RS07310at 1579.669 kb on + strand, within AMB_RS07310at 1579.669 kb on + strand, within AMB_RS07310at 1579.808 kb on - strand, within AMB_RS07310at 1579.842 kb on + strand, within AMB_RS07310at 1579.842 kb on + strand, within AMB_RS07310at 1579.843 kb on - strand, within AMB_RS07310at 1579.843 kb on - strand, within AMB_RS07310at 1579.882 kb on + strand, within AMB_RS07310at 1579.882 kb on + strand, within AMB_RS07310at 1579.882 kb on + strand, within AMB_RS07310at 1579.882 kb on + strand, within AMB_RS07310at 1579.882 kb on + strand, within AMB_RS07310at 1579.882 kb on + strand, within AMB_RS07310at 1579.883 kb on - strand, within AMB_RS07310at 1579.883 kb on - strand, within AMB_RS07310at 1579.883 kb on - strand, within AMB_RS07310at 1579.883 kb on - strand, within AMB_RS07310at 1579.884 kb on + strand, within AMB_RS07310at 1579.885 kb on - strand, within AMB_RS07310at 1579.885 kb on - strand, within AMB_RS07310at 1579.885 kb on - strand, within AMB_RS07310at 1579.905 kb on + strand, within AMB_RS07310at 1579.906 kb on - strand, within AMB_RS07310at 1579.936 kb on + strandat 1579.936 kb on + strandat 1579.936 kb on + strandat 1579.936 kb on + strandat 1579.936 kb on + strandat 1579.952 kb on - strandat 1579.952 kb on - strandat 1579.957 kb on + strandat 1579.957 kb on + strandat 1579.957 kb on + strandat 1579.958 kb on - strandat 1579.972 kb on + strandat 1579.995 kb on + strandat 1579.995 kb on + strandat 1579.995 kb on + strandat 1579.995 kb on + strandat 1579.995 kb on + strandat 1579.995 kb on + strandat 1579.995 kb on + strandat 1579.996 kb on - strandat 1579.996 kb on - strandat 1580.015 kb on - strandat 1580.054 kb on - strandat 1580.082 kb on + strandat 1580.082 kb on + strandat 1580.083 kb on - strandat 1580.089 kb on + strandat 1580.090 kb on - strandat 1580.196 kb on + strand, within AMB_RS07315at 1580.197 kb on - strand, within AMB_RS07315at 1580.197 kb on - strand, within AMB_RS07315at 1580.197 kb on - strand, within AMB_RS07315at 1580.416 kb on - strand, within AMB_RS07315at 1580.466 kb on + strand, within AMB_RS07315at 1580.466 kb on + strand, within AMB_RS07315at 1580.466 kb on + strand, within AMB_RS07315at 1580.467 kb on - strand, within AMB_RS07315at 1580.467 kb on - strand, within AMB_RS07315at 1580.516 kb on + strand, within AMB_RS07315at 1580.516 kb on + strand, within AMB_RS07315at 1580.517 kb on - strand, within AMB_RS07315at 1580.517 kb on - strand, within AMB_RS07315at 1580.661 kb on + strandat 1580.661 kb on + strandat 1580.723 kb on + strand, within AMB_RS07320at 1580.912 kb on + strand, within AMB_RS07320at 1580.912 kb on + strand, within AMB_RS07320at 1580.912 kb on + strand, within AMB_RS07320at 1580.912 kb on + strand, within AMB_RS07320at 1580.913 kb on - strand, within AMB_RS07320at 1580.913 kb on - strand, within AMB_RS07320at 1580.913 kb on - strand, within AMB_RS07320at 1580.913 kb on - strand, within AMB_RS07320at 1581.048 kb on - strand, within AMB_RS07320at 1581.048 kb on - strand, within AMB_RS07320

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_1
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1,577,798 + -0.2
1,577,968 + +1.2
1,578,317 + AMB_RS07305 0.48 +0.2
1,578,317 + AMB_RS07305 0.48 -0.1
1,578,317 + AMB_RS07305 0.48 -0.1
1,578,708 - -0.7
1,578,716 + -2.2
1,578,717 - -0.3
1,578,727 + -1.0
1,578,727 + +0.1
1,578,792 + -0.9
1,578,792 + +0.1
1,578,793 - -0.2
1,578,935 - AMB_RS07310 0.12 -1.1
1,578,935 - AMB_RS07310 0.12 -0.3
1,579,016 - AMB_RS07310 0.19 -0.1
1,579,016 - AMB_RS07310 0.19 -0.2
1,579,018 + AMB_RS07310 0.19 -0.7
1,579,018 + AMB_RS07310 0.19 -0.1
1,579,168 + AMB_RS07310 0.31 -2.7
1,579,168 + AMB_RS07310 0.31 -0.2
1,579,169 - AMB_RS07310 0.31 +0.4
1,579,169 - AMB_RS07310 0.31 -0.4
1,579,169 - AMB_RS07310 0.31 -0.0
1,579,169 - AMB_RS07310 0.31 +0.2
1,579,331 - AMB_RS07310 0.43 -0.3
1,579,425 + AMB_RS07310 0.51 -1.2
1,579,425 + AMB_RS07310 0.51 -0.8
1,579,426 - AMB_RS07310 0.51 -3.8
1,579,479 + AMB_RS07310 0.55 -0.5
1,579,490 - AMB_RS07310 0.56 -0.2
1,579,509 + AMB_RS07310 0.57 -0.2
1,579,509 + AMB_RS07310 0.57 -0.2
1,579,513 + AMB_RS07310 0.57 -0.3
1,579,513 + AMB_RS07310 0.57 +0.1
1,579,513 + AMB_RS07310 0.57 -1.4
1,579,514 - AMB_RS07310 0.58 +0.8
1,579,516 - AMB_RS07310 0.58 +0.4
1,579,652 - AMB_RS07310 0.68 -0.9
1,579,652 - AMB_RS07310 0.68 +0.2
1,579,654 + AMB_RS07310 0.68 +0.2
1,579,654 + AMB_RS07310 0.68 -0.6
1,579,654 + AMB_RS07310 0.68 -0.1
1,579,655 - AMB_RS07310 0.69 -0.1
1,579,655 - AMB_RS07310 0.69 -0.2
1,579,655 - AMB_RS07310 0.69 -0.7
1,579,655 - AMB_RS07310 0.69 -0.4
1,579,669 + AMB_RS07310 0.70 -1.3
1,579,669 + AMB_RS07310 0.70 +0.6
1,579,808 - AMB_RS07310 0.80 +1.6
1,579,842 + AMB_RS07310 0.83 +0.1
1,579,842 + AMB_RS07310 0.83 -1.6
1,579,843 - AMB_RS07310 0.83 -1.0
1,579,843 - AMB_RS07310 0.83 -0.6
1,579,882 + AMB_RS07310 0.86 -0.5
1,579,882 + AMB_RS07310 0.86 -0.3
1,579,882 + AMB_RS07310 0.86 -0.0
1,579,882 + AMB_RS07310 0.86 +0.2
1,579,882 + AMB_RS07310 0.86 -3.1
1,579,882 + AMB_RS07310 0.86 -1.4
1,579,883 - AMB_RS07310 0.86 -0.0
1,579,883 - AMB_RS07310 0.86 -0.3
1,579,883 - AMB_RS07310 0.86 -0.1
1,579,883 - AMB_RS07310 0.86 -0.1
1,579,884 + AMB_RS07310 0.86 +0.1
1,579,885 - AMB_RS07310 0.86 +0.6
1,579,885 - AMB_RS07310 0.86 -0.5
1,579,885 - AMB_RS07310 0.86 -0.1
1,579,905 + AMB_RS07310 0.88 -0.5
1,579,906 - AMB_RS07310 0.88 -0.1
1,579,936 + +0.4
1,579,936 + -1.4
1,579,936 + +0.7
1,579,936 + +0.2
1,579,936 + -0.4
1,579,952 - +0.1
1,579,952 - +0.1
1,579,957 + -0.7
1,579,957 + +0.6
1,579,957 + -0.9
1,579,958 - -0.1
1,579,972 + -0.1
1,579,995 + +0.8
1,579,995 + +0.0
1,579,995 + -0.1
1,579,995 + -0.1
1,579,995 + -2.4
1,579,995 + -0.2
1,579,995 + -0.7
1,579,996 - -0.6
1,579,996 - +0.3
1,580,015 - -2.6
1,580,054 - -0.1
1,580,082 + +0.6
1,580,082 + +1.5
1,580,083 - -0.3
1,580,089 + +1.0
1,580,090 - -0.0
1,580,196 + AMB_RS07315 0.15 -0.1
1,580,197 - AMB_RS07315 0.15 +0.2
1,580,197 - AMB_RS07315 0.15 +0.2
1,580,197 - AMB_RS07315 0.15 -1.5
1,580,416 - AMB_RS07315 0.56 -0.3
1,580,466 + AMB_RS07315 0.66 -0.8
1,580,466 + AMB_RS07315 0.66 -1.0
1,580,466 + AMB_RS07315 0.66 -0.7
1,580,467 - AMB_RS07315 0.66 +0.9
1,580,467 - AMB_RS07315 0.66 -0.6
1,580,516 + AMB_RS07315 0.75 -0.0
1,580,516 + AMB_RS07315 0.75 +0.0
1,580,517 - AMB_RS07315 0.75 -0.1
1,580,517 - AMB_RS07315 0.75 -0.7
1,580,661 + -0.4
1,580,661 + +0.8
1,580,723 + AMB_RS07320 0.13 +0.3
1,580,912 + AMB_RS07320 0.36 -0.4
1,580,912 + AMB_RS07320 0.36 -0.0
1,580,912 + AMB_RS07320 0.36 +1.1
1,580,912 + AMB_RS07320 0.36 -0.2
1,580,913 - AMB_RS07320 0.36 -2.2
1,580,913 - AMB_RS07320 0.36 -0.2
1,580,913 - AMB_RS07320 0.36 +0.0
1,580,913 - AMB_RS07320 0.36 +0.4
1,581,048 - AMB_RS07320 0.52 -1.0
1,581,048 - AMB_RS07320 0.52 -0.7

Or see this region's nucleotide sequence