Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06335

Experiment: 150_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06325 and AMB_RS06330 are separated by 13 nucleotidesAMB_RS06330 and AMB_RS06335 overlap by 4 nucleotidesAMB_RS06335 and AMB_RS06340 are separated by 5 nucleotides AMB_RS06325: AMB_RS06325 - metal-binding protein, at 1,328,360 to 1,328,782 _RS06325 AMB_RS06330: AMB_RS06330 - cytochrome c, at 1,328,796 to 1,329,530 _RS06330 AMB_RS06335: AMB_RS06335 - CusA/CzcA family heavy metal efflux RND transporter, at 1,329,527 to 1,332,628 _RS06335 AMB_RS06340: AMB_RS06340 - efflux RND transporter periplasmic adaptor subunit, at 1,332,634 to 1,334,190 _RS06340 Position (kb) 1329 1330 1331 1332 1333Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1328.542 kb on - strand, within AMB_RS06325at 1328.542 kb on - strand, within AMB_RS06325at 1328.592 kb on + strand, within AMB_RS06325at 1328.592 kb on + strand, within AMB_RS06325at 1328.644 kb on - strand, within AMB_RS06325at 1328.659 kb on + strand, within AMB_RS06325at 1328.659 kb on + strand, within AMB_RS06325at 1328.659 kb on + strand, within AMB_RS06325at 1328.659 kb on + strand, within AMB_RS06325at 1328.660 kb on - strand, within AMB_RS06325at 1328.660 kb on - strand, within AMB_RS06325at 1328.660 kb on - strand, within AMB_RS06325at 1328.660 kb on - strand, within AMB_RS06325at 1328.881 kb on + strand, within AMB_RS06330at 1328.881 kb on + strand, within AMB_RS06330at 1328.881 kb on + strand, within AMB_RS06330at 1328.881 kb on + strand, within AMB_RS06330at 1328.882 kb on - strand, within AMB_RS06330at 1328.882 kb on - strand, within AMB_RS06330at 1328.882 kb on - strand, within AMB_RS06330at 1328.882 kb on - strand, within AMB_RS06330at 1328.882 kb on - strand, within AMB_RS06330at 1328.951 kb on + strand, within AMB_RS06330at 1328.951 kb on + strand, within AMB_RS06330at 1328.951 kb on + strand, within AMB_RS06330at 1328.951 kb on + strand, within AMB_RS06330at 1328.952 kb on - strand, within AMB_RS06330at 1328.952 kb on - strand, within AMB_RS06330at 1328.952 kb on - strand, within AMB_RS06330at 1328.952 kb on - strand, within AMB_RS06330at 1328.952 kb on - strand, within AMB_RS06330at 1328.952 kb on - strand, within AMB_RS06330at 1328.952 kb on - strand, within AMB_RS06330at 1328.952 kb on - strand, within AMB_RS06330at 1329.019 kb on + strand, within AMB_RS06330at 1329.019 kb on + strand, within AMB_RS06330at 1329.019 kb on + strand, within AMB_RS06330at 1329.020 kb on - strand, within AMB_RS06330at 1329.020 kb on - strand, within AMB_RS06330at 1329.020 kb on - strand, within AMB_RS06330at 1329.020 kb on - strand, within AMB_RS06330at 1329.820 kb on - strandat 1329.820 kb on - strandat 1330.089 kb on + strand, within AMB_RS06335at 1330.089 kb on + strand, within AMB_RS06335at 1330.090 kb on - strand, within AMB_RS06335at 1330.449 kb on + strand, within AMB_RS06335at 1330.450 kb on - strand, within AMB_RS06335at 1330.450 kb on - strand, within AMB_RS06335at 1330.450 kb on - strand, within AMB_RS06335at 1330.450 kb on - strand, within AMB_RS06335at 1330.484 kb on + strand, within AMB_RS06335at 1330.484 kb on + strand, within AMB_RS06335at 1330.484 kb on + strand, within AMB_RS06335at 1330.485 kb on - strand, within AMB_RS06335at 1330.485 kb on - strand, within AMB_RS06335at 1330.485 kb on - strand, within AMB_RS06335at 1330.485 kb on - strand, within AMB_RS06335at 1330.485 kb on - strand, within AMB_RS06335at 1330.691 kb on + strand, within AMB_RS06335at 1330.776 kb on + strand, within AMB_RS06335at 1331.202 kb on + strand, within AMB_RS06335at 1331.202 kb on + strand, within AMB_RS06335at 1331.202 kb on + strand, within AMB_RS06335at 1331.202 kb on + strand, within AMB_RS06335at 1331.203 kb on - strand, within AMB_RS06335at 1331.203 kb on - strand, within AMB_RS06335at 1331.203 kb on - strand, within AMB_RS06335at 1331.203 kb on - strand, within AMB_RS06335at 1331.203 kb on - strand, within AMB_RS06335at 1331.203 kb on - strand, within AMB_RS06335at 1331.292 kb on + strand, within AMB_RS06335at 1331.293 kb on - strand, within AMB_RS06335at 1332.021 kb on + strand, within AMB_RS06335at 1332.021 kb on + strand, within AMB_RS06335at 1332.021 kb on + strand, within AMB_RS06335at 1332.137 kb on + strand, within AMB_RS06335at 1332.137 kb on + strand, within AMB_RS06335at 1332.137 kb on + strand, within AMB_RS06335at 1332.137 kb on + strand, within AMB_RS06335at 1332.138 kb on - strand, within AMB_RS06335at 1332.138 kb on - strand, within AMB_RS06335at 1332.138 kb on - strand, within AMB_RS06335at 1332.318 kb on + strandat 1332.319 kb on - strandat 1332.319 kb on - strandat 1332.319 kb on - strandat 1332.552 kb on + strandat 1332.553 kb on - strandat 1332.635 kb on + strandat 1332.997 kb on + strand, within AMB_RS06340at 1332.997 kb on + strand, within AMB_RS06340at 1332.998 kb on - strand, within AMB_RS06340at 1332.998 kb on - strand, within AMB_RS06340

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_1
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1,328,542 - AMB_RS06325 0.43 -0.9
1,328,542 - AMB_RS06325 0.43 -0.1
1,328,592 + AMB_RS06325 0.55 +0.2
1,328,592 + AMB_RS06325 0.55 -0.3
1,328,644 - AMB_RS06325 0.67 +0.6
1,328,659 + AMB_RS06325 0.71 -3.0
1,328,659 + AMB_RS06325 0.71 -0.0
1,328,659 + AMB_RS06325 0.71 -0.4
1,328,659 + AMB_RS06325 0.71 -0.7
1,328,660 - AMB_RS06325 0.71 -1.9
1,328,660 - AMB_RS06325 0.71 +0.6
1,328,660 - AMB_RS06325 0.71 -0.4
1,328,660 - AMB_RS06325 0.71 -0.2
1,328,881 + AMB_RS06330 0.12 -0.5
1,328,881 + AMB_RS06330 0.12 +0.7
1,328,881 + AMB_RS06330 0.12 -0.3
1,328,881 + AMB_RS06330 0.12 +0.2
1,328,882 - AMB_RS06330 0.12 +1.6
1,328,882 - AMB_RS06330 0.12 -1.0
1,328,882 - AMB_RS06330 0.12 +2.2
1,328,882 - AMB_RS06330 0.12 -0.5
1,328,882 - AMB_RS06330 0.12 -0.7
1,328,951 + AMB_RS06330 0.21 -0.4
1,328,951 + AMB_RS06330 0.21 -0.3
1,328,951 + AMB_RS06330 0.21 -0.3
1,328,951 + AMB_RS06330 0.21 +0.6
1,328,952 - AMB_RS06330 0.21 -1.3
1,328,952 - AMB_RS06330 0.21 -0.8
1,328,952 - AMB_RS06330 0.21 +0.3
1,328,952 - AMB_RS06330 0.21 -0.1
1,328,952 - AMB_RS06330 0.21 -0.8
1,328,952 - AMB_RS06330 0.21 -2.0
1,328,952 - AMB_RS06330 0.21 -1.2
1,328,952 - AMB_RS06330 0.21 +3.4
1,329,019 + AMB_RS06330 0.30 +0.4
1,329,019 + AMB_RS06330 0.30 +0.6
1,329,019 + AMB_RS06330 0.30 -0.4
1,329,020 - AMB_RS06330 0.30 -0.1
1,329,020 - AMB_RS06330 0.30 -1.4
1,329,020 - AMB_RS06330 0.30 -0.7
1,329,020 - AMB_RS06330 0.30 -1.3
1,329,820 - -0.2
1,329,820 - -0.3
1,330,089 + AMB_RS06335 0.18 +0.6
1,330,089 + AMB_RS06335 0.18 -0.3
1,330,090 - AMB_RS06335 0.18 -0.2
1,330,449 + AMB_RS06335 0.30 +0.1
1,330,450 - AMB_RS06335 0.30 -1.0
1,330,450 - AMB_RS06335 0.30 -0.8
1,330,450 - AMB_RS06335 0.30 -0.4
1,330,450 - AMB_RS06335 0.30 -0.4
1,330,484 + AMB_RS06335 0.31 -0.9
1,330,484 + AMB_RS06335 0.31 +0.3
1,330,484 + AMB_RS06335 0.31 -0.7
1,330,485 - AMB_RS06335 0.31 -1.2
1,330,485 - AMB_RS06335 0.31 -0.6
1,330,485 - AMB_RS06335 0.31 -0.1
1,330,485 - AMB_RS06335 0.31 -0.6
1,330,485 - AMB_RS06335 0.31 -0.0
1,330,691 + AMB_RS06335 0.38 +1.2
1,330,776 + AMB_RS06335 0.40 -0.3
1,331,202 + AMB_RS06335 0.54 -1.2
1,331,202 + AMB_RS06335 0.54 -0.5
1,331,202 + AMB_RS06335 0.54 -0.6
1,331,202 + AMB_RS06335 0.54 -0.8
1,331,203 - AMB_RS06335 0.54 -0.5
1,331,203 - AMB_RS06335 0.54 -0.2
1,331,203 - AMB_RS06335 0.54 +0.1
1,331,203 - AMB_RS06335 0.54 -0.8
1,331,203 - AMB_RS06335 0.54 +0.4
1,331,203 - AMB_RS06335 0.54 +0.1
1,331,292 + AMB_RS06335 0.57 -0.2
1,331,293 - AMB_RS06335 0.57 -0.5
1,332,021 + AMB_RS06335 0.80 -0.6
1,332,021 + AMB_RS06335 0.80 -0.4
1,332,021 + AMB_RS06335 0.80 +0.3
1,332,137 + AMB_RS06335 0.84 -0.5
1,332,137 + AMB_RS06335 0.84 -0.5
1,332,137 + AMB_RS06335 0.84 +0.3
1,332,137 + AMB_RS06335 0.84 -3.2
1,332,138 - AMB_RS06335 0.84 -0.5
1,332,138 - AMB_RS06335 0.84 -0.8
1,332,138 - AMB_RS06335 0.84 +0.4
1,332,318 + -0.1
1,332,319 - +0.2
1,332,319 - -0.9
1,332,319 - -0.1
1,332,552 + -0.1
1,332,553 - +1.6
1,332,635 + +1.2
1,332,997 + AMB_RS06340 0.23 -1.1
1,332,997 + AMB_RS06340 0.23 +0.3
1,332,998 - AMB_RS06340 0.23 -1.0
1,332,998 - AMB_RS06340 0.23 +0.6

Or see this region's nucleotide sequence