Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS05850

Experiment: 150_mag_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS05835 and AMB_RS05840 are separated by 17 nucleotidesAMB_RS05840 and AMB_RS05845 are separated by 11 nucleotidesAMB_RS05845 and AMB_RS05850 are separated by 10 nucleotidesAMB_RS05850 and AMB_RS05855 overlap by 4 nucleotides AMB_RS05835: AMB_RS05835 - hypothetical protein, at 1,231,610 to 1,232,353 _RS05835 AMB_RS05840: AMB_RS05840 - hypothetical protein, at 1,232,371 to 1,232,598 _RS05840 AMB_RS05845: AMB_RS05845 - hypothetical protein, at 1,232,610 to 1,232,966 _RS05845 AMB_RS05850: AMB_RS05850 - hypothetical protein, at 1,232,977 to 1,233,774 _RS05850 AMB_RS05855: AMB_RS05855 - P-loop ATPase and inactivated derivative, at 1,233,771 to 1,236,287 _RS05855 Position (kb) 1232 1233 1234Strain fitness (log2 ratio) -3 -2 -1 0 1at 1232.061 kb on - strand, within AMB_RS05835at 1232.111 kb on + strand, within AMB_RS05835at 1232.111 kb on + strand, within AMB_RS05835at 1232.112 kb on - strand, within AMB_RS05835at 1232.370 kb on + strandat 1232.370 kb on + strandat 1232.370 kb on + strandat 1232.371 kb on - strandat 1232.371 kb on - strandat 1232.371 kb on - strandat 1232.371 kb on - strandat 1232.640 kb on + strandat 1232.641 kb on - strandat 1232.668 kb on - strand, within AMB_RS05845at 1232.889 kb on + strand, within AMB_RS05845at 1232.890 kb on - strand, within AMB_RS05845at 1233.010 kb on + strandat 1233.109 kb on + strand, within AMB_RS05850at 1233.109 kb on + strand, within AMB_RS05850at 1233.110 kb on - strand, within AMB_RS05850at 1233.110 kb on - strand, within AMB_RS05850at 1233.157 kb on + strand, within AMB_RS05850at 1233.158 kb on - strand, within AMB_RS05850at 1233.163 kb on + strand, within AMB_RS05850at 1233.392 kb on - strand, within AMB_RS05850at 1233.478 kb on + strand, within AMB_RS05850at 1233.508 kb on + strand, within AMB_RS05850at 1233.508 kb on + strand, within AMB_RS05850at 1233.508 kb on + strand, within AMB_RS05850at 1233.508 kb on + strand, within AMB_RS05850at 1233.508 kb on + strand, within AMB_RS05850at 1233.508 kb on + strand, within AMB_RS05850at 1233.509 kb on - strand, within AMB_RS05850at 1233.509 kb on - strand, within AMB_RS05850at 1233.509 kb on - strand, within AMB_RS05850at 1233.509 kb on - strand, within AMB_RS05850at 1233.509 kb on - strand, within AMB_RS05850at 1233.824 kb on + strandat 1233.959 kb on + strandat 1233.960 kb on - strandat 1233.960 kb on - strandat 1233.960 kb on - strandat 1234.108 kb on + strand, within AMB_RS05855at 1234.109 kb on - strand, within AMB_RS05855at 1234.109 kb on - strand, within AMB_RS05855at 1234.109 kb on - strand, within AMB_RS05855at 1234.167 kb on - strand, within AMB_RS05855at 1234.212 kb on + strand, within AMB_RS05855at 1234.212 kb on + strand, within AMB_RS05855at 1234.212 kb on + strand, within AMB_RS05855at 1234.213 kb on - strand, within AMB_RS05855at 1234.584 kb on - strand, within AMB_RS05855at 1234.749 kb on + strand, within AMB_RS05855at 1234.750 kb on - strand, within AMB_RS05855at 1234.750 kb on - strand, within AMB_RS05855

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_1
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1,232,061 - AMB_RS05835 0.61 -0.3
1,232,111 + AMB_RS05835 0.67 -0.4
1,232,111 + AMB_RS05835 0.67 +0.0
1,232,112 - AMB_RS05835 0.67 -1.7
1,232,370 + +0.5
1,232,370 + -0.7
1,232,370 + -0.5
1,232,371 - -0.8
1,232,371 - -3.0
1,232,371 - +0.2
1,232,371 - +0.2
1,232,640 + +0.5
1,232,641 - -0.3
1,232,668 - AMB_RS05845 0.16 +0.1
1,232,889 + AMB_RS05845 0.78 -0.6
1,232,890 - AMB_RS05845 0.78 -0.6
1,233,010 + -2.3
1,233,109 + AMB_RS05850 0.17 -0.2
1,233,109 + AMB_RS05850 0.17 -0.2
1,233,110 - AMB_RS05850 0.17 +0.1
1,233,110 - AMB_RS05850 0.17 -0.8
1,233,157 + AMB_RS05850 0.23 -0.6
1,233,158 - AMB_RS05850 0.23 +0.6
1,233,163 + AMB_RS05850 0.23 +0.1
1,233,392 - AMB_RS05850 0.52 -0.5
1,233,478 + AMB_RS05850 0.63 -2.6
1,233,508 + AMB_RS05850 0.67 -0.8
1,233,508 + AMB_RS05850 0.67 -0.9
1,233,508 + AMB_RS05850 0.67 -0.1
1,233,508 + AMB_RS05850 0.67 -0.4
1,233,508 + AMB_RS05850 0.67 -0.2
1,233,508 + AMB_RS05850 0.67 -0.4
1,233,509 - AMB_RS05850 0.67 -0.5
1,233,509 - AMB_RS05850 0.67 +0.3
1,233,509 - AMB_RS05850 0.67 -0.7
1,233,509 - AMB_RS05850 0.67 -0.1
1,233,509 - AMB_RS05850 0.67 +0.2
1,233,824 + -0.6
1,233,959 + -0.4
1,233,960 - -0.6
1,233,960 - -3.1
1,233,960 - -2.0
1,234,108 + AMB_RS05855 0.13 -1.1
1,234,109 - AMB_RS05855 0.13 +0.8
1,234,109 - AMB_RS05855 0.13 -0.8
1,234,109 - AMB_RS05855 0.13 -0.3
1,234,167 - AMB_RS05855 0.16 -0.2
1,234,212 + AMB_RS05855 0.18 -0.2
1,234,212 + AMB_RS05855 0.18 -0.3
1,234,212 + AMB_RS05855 0.18 -0.7
1,234,213 - AMB_RS05855 0.18 -0.2
1,234,584 - AMB_RS05855 0.32 +0.2
1,234,749 + AMB_RS05855 0.39 -0.7
1,234,750 - AMB_RS05855 0.39 +0.4
1,234,750 - AMB_RS05855 0.39 -0.1

Or see this region's nucleotide sequence