Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04310

Experiment: 150_mag_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS04305 and AMB_RS04310 are separated by 12 nucleotidesAMB_RS04310 and AMB_RS04315 are separated by 48 nucleotides AMB_RS04305: AMB_RS04305 - HD domain-containing protein, at 903,990 to 905,198 _RS04305 AMB_RS04310: AMB_RS04310 - receptor protein, at 905,211 to 907,154 _RS04310 AMB_RS04315: AMB_RS04315 - PAS domain S-box protein, at 907,203 to 909,743 _RS04315 Position (kb) 905 906 907 908Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 904.343 kb on + strand, within AMB_RS04305at 904.343 kb on + strand, within AMB_RS04305at 904.344 kb on - strand, within AMB_RS04305at 904.392 kb on + strand, within AMB_RS04305at 904.392 kb on + strand, within AMB_RS04305at 904.392 kb on + strand, within AMB_RS04305at 904.392 kb on + strand, within AMB_RS04305at 904.393 kb on - strand, within AMB_RS04305at 904.393 kb on - strand, within AMB_RS04305at 904.393 kb on - strand, within AMB_RS04305at 904.393 kb on - strand, within AMB_RS04305at 904.584 kb on + strand, within AMB_RS04305at 904.584 kb on + strand, within AMB_RS04305at 904.680 kb on + strand, within AMB_RS04305at 904.680 kb on + strand, within AMB_RS04305at 904.680 kb on + strand, within AMB_RS04305at 904.680 kb on + strand, within AMB_RS04305at 904.681 kb on - strand, within AMB_RS04305at 904.681 kb on - strand, within AMB_RS04305at 904.681 kb on - strand, within AMB_RS04305at 904.681 kb on - strand, within AMB_RS04305at 904.681 kb on - strand, within AMB_RS04305at 904.681 kb on - strand, within AMB_RS04305at 904.686 kb on + strand, within AMB_RS04305at 904.686 kb on + strand, within AMB_RS04305at 904.686 kb on + strand, within AMB_RS04305at 904.686 kb on + strand, within AMB_RS04305at 904.686 kb on + strand, within AMB_RS04305at 904.686 kb on + strand, within AMB_RS04305at 904.686 kb on + strand, within AMB_RS04305at 904.686 kb on + strand, within AMB_RS04305at 904.687 kb on - strand, within AMB_RS04305at 904.687 kb on - strand, within AMB_RS04305at 904.872 kb on - strand, within AMB_RS04305at 904.872 kb on - strand, within AMB_RS04305at 904.896 kb on + strand, within AMB_RS04305at 904.896 kb on + strand, within AMB_RS04305at 904.978 kb on - strand, within AMB_RS04305at 905.040 kb on - strand, within AMB_RS04305at 905.070 kb on + strand, within AMB_RS04305at 905.071 kb on - strand, within AMB_RS04305at 905.308 kb on + strandat 905.308 kb on + strandat 905.308 kb on + strandat 905.309 kb on - strandat 905.443 kb on + strand, within AMB_RS04310at 905.443 kb on + strand, within AMB_RS04310at 905.443 kb on + strand, within AMB_RS04310at 905.443 kb on + strand, within AMB_RS04310at 905.444 kb on - strand, within AMB_RS04310at 905.444 kb on - strand, within AMB_RS04310at 905.677 kb on + strand, within AMB_RS04310at 905.678 kb on - strand, within AMB_RS04310at 905.696 kb on - strand, within AMB_RS04310at 905.696 kb on - strand, within AMB_RS04310at 905.779 kb on + strand, within AMB_RS04310at 905.780 kb on - strand, within AMB_RS04310at 905.944 kb on + strand, within AMB_RS04310at 905.944 kb on + strand, within AMB_RS04310at 905.944 kb on + strand, within AMB_RS04310at 906.091 kb on + strand, within AMB_RS04310at 906.092 kb on - strand, within AMB_RS04310at 906.092 kb on - strand, within AMB_RS04310at 906.317 kb on - strand, within AMB_RS04310at 906.340 kb on + strand, within AMB_RS04310at 906.341 kb on - strand, within AMB_RS04310at 906.372 kb on - strand, within AMB_RS04310at 906.440 kb on - strand, within AMB_RS04310at 906.440 kb on - strand, within AMB_RS04310at 906.490 kb on + strand, within AMB_RS04310at 906.490 kb on + strand, within AMB_RS04310at 906.490 kb on + strand, within AMB_RS04310at 906.490 kb on + strand, within AMB_RS04310at 906.490 kb on + strand, within AMB_RS04310at 906.491 kb on - strand, within AMB_RS04310at 906.491 kb on - strand, within AMB_RS04310at 906.491 kb on - strand, within AMB_RS04310at 906.491 kb on - strand, within AMB_RS04310at 906.508 kb on - strand, within AMB_RS04310at 906.508 kb on - strand, within AMB_RS04310at 906.607 kb on + strand, within AMB_RS04310at 906.715 kb on + strand, within AMB_RS04310at 906.721 kb on + strand, within AMB_RS04310at 906.722 kb on - strand, within AMB_RS04310at 906.752 kb on - strand, within AMB_RS04310at 907.013 kb on + strandat 907.014 kb on - strandat 907.014 kb on - strandat 907.015 kb on + strandat 907.015 kb on + strandat 907.015 kb on + strandat 907.015 kb on + strandat 907.016 kb on - strandat 907.016 kb on - strandat 907.016 kb on - strandat 907.016 kb on - strandat 907.016 kb on - strandat 907.161 kb on + strandat 907.162 kb on - strandat 907.167 kb on + strandat 907.167 kb on + strandat 907.167 kb on + strandat 907.168 kb on - strandat 907.509 kb on + strand, within AMB_RS04315at 907.617 kb on + strand, within AMB_RS04315at 907.617 kb on + strand, within AMB_RS04315at 907.617 kb on + strand, within AMB_RS04315at 907.618 kb on - strand, within AMB_RS04315at 907.618 kb on - strand, within AMB_RS04315at 907.618 kb on - strand, within AMB_RS04315at 907.749 kb on + strand, within AMB_RS04315at 907.749 kb on + strand, within AMB_RS04315at 907.779 kb on - strand, within AMB_RS04315at 907.779 kb on - strand, within AMB_RS04315at 907.899 kb on + strand, within AMB_RS04315at 907.923 kb on + strand, within AMB_RS04315at 907.923 kb on + strand, within AMB_RS04315at 907.923 kb on + strand, within AMB_RS04315at 907.923 kb on + strand, within AMB_RS04315at 907.924 kb on - strand, within AMB_RS04315at 907.924 kb on - strand, within AMB_RS04315at 907.924 kb on - strand, within AMB_RS04315at 907.924 kb on - strand, within AMB_RS04315at 907.924 kb on - strand, within AMB_RS04315at 908.128 kb on + strand, within AMB_RS04315at 908.128 kb on + strand, within AMB_RS04315at 908.129 kb on - strand, within AMB_RS04315at 908.129 kb on - strand, within AMB_RS04315at 908.130 kb on + strand, within AMB_RS04315at 908.130 kb on + strand, within AMB_RS04315at 908.130 kb on + strand, within AMB_RS04315at 908.130 kb on + strand, within AMB_RS04315at 908.130 kb on + strand, within AMB_RS04315at 908.130 kb on + strand, within AMB_RS04315at 908.130 kb on + strand, within AMB_RS04315at 908.131 kb on - strand, within AMB_RS04315at 908.131 kb on - strand, within AMB_RS04315at 908.131 kb on - strand, within AMB_RS04315at 908.131 kb on - strand, within AMB_RS04315at 908.131 kb on - strand, within AMB_RS04315at 908.131 kb on - strand, within AMB_RS04315at 908.131 kb on - strand, within AMB_RS04315at 908.131 kb on - strand, within AMB_RS04315at 908.131 kb on - strand, within AMB_RS04315at 908.131 kb on - strand, within AMB_RS04315

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 150_mag_1
remove
904,343 + AMB_RS04305 0.29 -0.5
904,343 + AMB_RS04305 0.29 +0.1
904,344 - AMB_RS04305 0.29 +1.0
904,392 + AMB_RS04305 0.33 -0.1
904,392 + AMB_RS04305 0.33 -2.7
904,392 + AMB_RS04305 0.33 +0.4
904,392 + AMB_RS04305 0.33 -1.4
904,393 - AMB_RS04305 0.33 +0.4
904,393 - AMB_RS04305 0.33 -0.0
904,393 - AMB_RS04305 0.33 -0.3
904,393 - AMB_RS04305 0.33 -0.7
904,584 + AMB_RS04305 0.49 -1.1
904,584 + AMB_RS04305 0.49 +0.4
904,680 + AMB_RS04305 0.57 +0.6
904,680 + AMB_RS04305 0.57 -0.4
904,680 + AMB_RS04305 0.57 +0.3
904,680 + AMB_RS04305 0.57 +1.4
904,681 - AMB_RS04305 0.57 -2.7
904,681 - AMB_RS04305 0.57 +0.6
904,681 - AMB_RS04305 0.57 -0.0
904,681 - AMB_RS04305 0.57 +0.3
904,681 - AMB_RS04305 0.57 -0.5
904,681 - AMB_RS04305 0.57 +0.4
904,686 + AMB_RS04305 0.58 +0.8
904,686 + AMB_RS04305 0.58 -0.9
904,686 + AMB_RS04305 0.58 -0.5
904,686 + AMB_RS04305 0.58 -0.0
904,686 + AMB_RS04305 0.58 -0.1
904,686 + AMB_RS04305 0.58 -0.2
904,686 + AMB_RS04305 0.58 +0.6
904,686 + AMB_RS04305 0.58 +0.6
904,687 - AMB_RS04305 0.58 -0.6
904,687 - AMB_RS04305 0.58 +1.0
904,872 - AMB_RS04305 0.73 +0.3
904,872 - AMB_RS04305 0.73 +0.6
904,896 + AMB_RS04305 0.75 +0.1
904,896 + AMB_RS04305 0.75 +0.0
904,978 - AMB_RS04305 0.82 -1.7
905,040 - AMB_RS04305 0.87 -0.3
905,070 + AMB_RS04305 0.89 -0.1
905,071 - AMB_RS04305 0.89 -0.9
905,308 + -0.0
905,308 + -0.5
905,308 + -0.5
905,309 - +1.4
905,443 + AMB_RS04310 0.12 +0.0
905,443 + AMB_RS04310 0.12 +0.0
905,443 + AMB_RS04310 0.12 -0.0
905,443 + AMB_RS04310 0.12 +0.1
905,444 - AMB_RS04310 0.12 -2.0
905,444 - AMB_RS04310 0.12 -0.2
905,677 + AMB_RS04310 0.24 -1.0
905,678 - AMB_RS04310 0.24 +0.3
905,696 - AMB_RS04310 0.25 -2.0
905,696 - AMB_RS04310 0.25 -0.4
905,779 + AMB_RS04310 0.29 -0.4
905,780 - AMB_RS04310 0.29 -1.1
905,944 + AMB_RS04310 0.38 +0.3
905,944 + AMB_RS04310 0.38 +1.2
905,944 + AMB_RS04310 0.38 -0.4
906,091 + AMB_RS04310 0.45 -0.5
906,092 - AMB_RS04310 0.45 -0.7
906,092 - AMB_RS04310 0.45 -1.4
906,317 - AMB_RS04310 0.57 -1.3
906,340 + AMB_RS04310 0.58 +1.1
906,341 - AMB_RS04310 0.58 -1.2
906,372 - AMB_RS04310 0.60 -0.7
906,440 - AMB_RS04310 0.63 -0.2
906,440 - AMB_RS04310 0.63 -0.1
906,490 + AMB_RS04310 0.66 -0.2
906,490 + AMB_RS04310 0.66 +0.1
906,490 + AMB_RS04310 0.66 -0.1
906,490 + AMB_RS04310 0.66 +0.6
906,490 + AMB_RS04310 0.66 +0.6
906,491 - AMB_RS04310 0.66 -0.6
906,491 - AMB_RS04310 0.66 -0.0
906,491 - AMB_RS04310 0.66 +0.5
906,491 - AMB_RS04310 0.66 +2.0
906,508 - AMB_RS04310 0.67 -0.9
906,508 - AMB_RS04310 0.67 -0.2
906,607 + AMB_RS04310 0.72 -0.3
906,715 + AMB_RS04310 0.77 -0.5
906,721 + AMB_RS04310 0.78 -1.8
906,722 - AMB_RS04310 0.78 +2.2
906,752 - AMB_RS04310 0.79 +0.6
907,013 + +0.1
907,014 - -3.5
907,014 - +0.7
907,015 + +0.4
907,015 + -0.4
907,015 + -0.1
907,015 + -0.2
907,016 - -1.2
907,016 - +1.6
907,016 - -0.7
907,016 - +1.1
907,016 - -0.7
907,161 + -0.6
907,162 - -0.0
907,167 + +1.4
907,167 + -1.8
907,167 + -1.6
907,168 - -1.1
907,509 + AMB_RS04315 0.12 -0.2
907,617 + AMB_RS04315 0.16 +0.1
907,617 + AMB_RS04315 0.16 +0.4
907,617 + AMB_RS04315 0.16 -0.1
907,618 - AMB_RS04315 0.16 -0.3
907,618 - AMB_RS04315 0.16 +0.5
907,618 - AMB_RS04315 0.16 -1.2
907,749 + AMB_RS04315 0.21 -0.2
907,749 + AMB_RS04315 0.21 +0.6
907,779 - AMB_RS04315 0.23 -0.3
907,779 - AMB_RS04315 0.23 -2.4
907,899 + AMB_RS04315 0.27 -0.0
907,923 + AMB_RS04315 0.28 -0.1
907,923 + AMB_RS04315 0.28 +1.1
907,923 + AMB_RS04315 0.28 +0.5
907,923 + AMB_RS04315 0.28 -0.1
907,924 - AMB_RS04315 0.28 -0.2
907,924 - AMB_RS04315 0.28 -2.0
907,924 - AMB_RS04315 0.28 -1.4
907,924 - AMB_RS04315 0.28 +2.6
907,924 - AMB_RS04315 0.28 -1.0
908,128 + AMB_RS04315 0.36 +0.6
908,128 + AMB_RS04315 0.36 -1.8
908,129 - AMB_RS04315 0.36 -1.6
908,129 - AMB_RS04315 0.36 -0.4
908,130 + AMB_RS04315 0.36 -0.8
908,130 + AMB_RS04315 0.36 -0.7
908,130 + AMB_RS04315 0.36 -0.9
908,130 + AMB_RS04315 0.36 -1.7
908,130 + AMB_RS04315 0.36 -0.1
908,130 + AMB_RS04315 0.36 -0.1
908,130 + AMB_RS04315 0.36 +2.0
908,131 - AMB_RS04315 0.37 +1.4
908,131 - AMB_RS04315 0.37 -1.7
908,131 - AMB_RS04315 0.37 -1.0
908,131 - AMB_RS04315 0.37 -0.5
908,131 - AMB_RS04315 0.37 -0.9
908,131 - AMB_RS04315 0.37 -1.8
908,131 - AMB_RS04315 0.37 -0.4
908,131 - AMB_RS04315 0.37 +1.1
908,131 - AMB_RS04315 0.37 -0.1
908,131 - AMB_RS04315 0.37 -0.1

Or see this region's nucleotide sequence