Experiment: 150_mag_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02905 and AMB_RS02910 are separated by 7 nucleotides AMB_RS02910 and AMB_RS02915 overlap by 2 nucleotides AMB_RS02915 and AMB_RS02920 overlap by 4 nucleotides AMB_RS02920 and AMB_RS02925 are separated by 4 nucleotides
AMB_RS02905: AMB_RS02905 - hypothetical protein, at 608,820 to 609,068
_RS02905
AMB_RS02910: AMB_RS02910 - 4a-hydroxytetrahydrobiopterin dehydratase, at 609,076 to 609,474
_RS02910
AMB_RS02915: AMB_RS02915 - hypothetical protein, at 609,473 to 609,868
_RS02915
AMB_RS02920: AMB_RS02920 - ATP-dependent protease, at 609,865 to 612,321
_RS02920
AMB_RS02925: AMB_RS02925 - spermidine/putrescine ABC transporter substrate-binding protein, at 612,326 to 613,369
_RS02925
Position (kb) 609
610
611
612
613 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 609.052 kb on + strand at 609.053 kb on - strand at 609.077 kb on + strand at 609.077 kb on + strand at 609.078 kb on - strand at 609.078 kb on - strand at 609.078 kb on - strand at 609.450 kb on - strand at 609.450 kb on - strand at 609.466 kb on + strand at 609.772 kb on + strand, within AMB_RS02915 at 609.772 kb on + strand, within AMB_RS02915 at 609.850 kb on + strand at 609.919 kb on + strand at 610.165 kb on + strand, within AMB_RS02920 at 610.165 kb on + strand, within AMB_RS02920 at 610.165 kb on + strand, within AMB_RS02920 at 610.165 kb on + strand, within AMB_RS02920 at 610.165 kb on + strand, within AMB_RS02920 at 610.165 kb on + strand, within AMB_RS02920 at 610.165 kb on + strand, within AMB_RS02920 at 610.166 kb on - strand, within AMB_RS02920 at 610.166 kb on - strand, within AMB_RS02920 at 610.166 kb on - strand, within AMB_RS02920 at 610.166 kb on - strand, within AMB_RS02920 at 610.166 kb on - strand, within AMB_RS02920 at 610.166 kb on - strand, within AMB_RS02920 at 610.166 kb on - strand, within AMB_RS02920 at 610.166 kb on - strand, within AMB_RS02920 at 610.365 kb on + strand, within AMB_RS02920 at 610.691 kb on - strand, within AMB_RS02920 at 610.691 kb on - strand, within AMB_RS02920 at 610.874 kb on - strand, within AMB_RS02920 at 610.909 kb on + strand, within AMB_RS02920 at 610.909 kb on + strand, within AMB_RS02920 at 610.910 kb on - strand, within AMB_RS02920 at 610.910 kb on - strand, within AMB_RS02920 at 610.910 kb on - strand, within AMB_RS02920 at 610.910 kb on - strand, within AMB_RS02920 at 610.910 kb on - strand, within AMB_RS02920 at 610.910 kb on - strand, within AMB_RS02920 at 610.910 kb on - strand, within AMB_RS02920 at 610.910 kb on - strand, within AMB_RS02920 at 610.910 kb on - strand, within AMB_RS02920 at 610.910 kb on - strand, within AMB_RS02920 at 610.911 kb on + strand, within AMB_RS02920 at 610.911 kb on + strand, within AMB_RS02920 at 610.912 kb on - strand, within AMB_RS02920 at 610.912 kb on - strand, within AMB_RS02920 at 610.912 kb on - strand, within AMB_RS02920 at 610.988 kb on - strand, within AMB_RS02920 at 611.179 kb on + strand, within AMB_RS02920 at 611.179 kb on + strand, within AMB_RS02920 at 611.180 kb on - strand, within AMB_RS02920 at 611.182 kb on + strand, within AMB_RS02920 at 611.182 kb on + strand, within AMB_RS02920 at 611.183 kb on - strand, within AMB_RS02920 at 611.271 kb on + strand, within AMB_RS02920 at 611.271 kb on + strand, within AMB_RS02920 at 611.271 kb on + strand, within AMB_RS02920 at 611.271 kb on + strand, within AMB_RS02920 at 611.271 kb on + strand, within AMB_RS02920 at 611.271 kb on + strand, within AMB_RS02920 at 611.272 kb on - strand, within AMB_RS02920 at 611.272 kb on - strand, within AMB_RS02920 at 611.272 kb on - strand, within AMB_RS02920 at 611.406 kb on + strand, within AMB_RS02920 at 611.878 kb on + strand, within AMB_RS02920 at 611.879 kb on - strand, within AMB_RS02920 at 612.065 kb on + strand, within AMB_RS02920 at 612.128 kb on - strand at 612.319 kb on + strand at 612.320 kb on - strand at 612.320 kb on - strand at 612.320 kb on - strand at 612.416 kb on + strand at 612.416 kb on + strand at 612.533 kb on + strand, within AMB_RS02925 at 612.557 kb on + strand, within AMB_RS02925 at 612.557 kb on + strand, within AMB_RS02925 at 612.558 kb on - strand, within AMB_RS02925 at 612.678 kb on - strand, within AMB_RS02925 at 612.678 kb on - strand, within AMB_RS02925 at 612.839 kb on + strand, within AMB_RS02925 at 613.037 kb on + strand, within AMB_RS02925 at 613.037 kb on + strand, within AMB_RS02925 at 613.037 kb on + strand, within AMB_RS02925 at 613.037 kb on + strand, within AMB_RS02925 at 613.038 kb on - strand, within AMB_RS02925 at 613.038 kb on - strand, within AMB_RS02925 at 613.038 kb on - strand, within AMB_RS02925 at 613.038 kb on - strand, within AMB_RS02925 at 613.038 kb on - strand, within AMB_RS02925 at 613.038 kb on - strand, within AMB_RS02925 at 613.044 kb on - strand, within AMB_RS02925 at 613.181 kb on + strand, within AMB_RS02925 at 613.181 kb on + strand, within AMB_RS02925 at 613.181 kb on + strand, within AMB_RS02925 at 613.182 kb on - strand, within AMB_RS02925 at 613.182 kb on - strand, within AMB_RS02925 at 613.182 kb on - strand, within AMB_RS02925 at 613.182 kb on - strand, within AMB_RS02925
Per-strain Table
Position Strand Gene LocusTag Fraction 150_mag_1 remove 609,052 + -0.2 609,053 - -0.2 609,077 + -0.0 609,077 + +0.3 609,078 - -0.2 609,078 - -1.4 609,078 - +0.8 609,450 - -0.4 609,450 - -2.1 609,466 + -0.6 609,772 + AMB_RS02915 0.76 -0.2 609,772 + AMB_RS02915 0.76 -0.0 609,850 + +0.7 609,919 + -0.7 610,165 + AMB_RS02920 0.12 -0.6 610,165 + AMB_RS02920 0.12 +0.3 610,165 + AMB_RS02920 0.12 -0.0 610,165 + AMB_RS02920 0.12 -0.4 610,165 + AMB_RS02920 0.12 -0.4 610,165 + AMB_RS02920 0.12 -0.6 610,165 + AMB_RS02920 0.12 +0.5 610,166 - AMB_RS02920 0.12 -0.9 610,166 - AMB_RS02920 0.12 +0.4 610,166 - AMB_RS02920 0.12 +0.2 610,166 - AMB_RS02920 0.12 -0.0 610,166 - AMB_RS02920 0.12 +0.7 610,166 - AMB_RS02920 0.12 +0.3 610,166 - AMB_RS02920 0.12 -3.0 610,166 - AMB_RS02920 0.12 -0.1 610,365 + AMB_RS02920 0.20 -0.2 610,691 - AMB_RS02920 0.34 -1.0 610,691 - AMB_RS02920 0.34 -0.1 610,874 - AMB_RS02920 0.41 +0.4 610,909 + AMB_RS02920 0.42 -0.5 610,909 + AMB_RS02920 0.42 +0.2 610,910 - AMB_RS02920 0.43 -0.4 610,910 - AMB_RS02920 0.43 -0.9 610,910 - AMB_RS02920 0.43 +0.1 610,910 - AMB_RS02920 0.43 -0.2 610,910 - AMB_RS02920 0.43 -0.9 610,910 - AMB_RS02920 0.43 -2.0 610,910 - AMB_RS02920 0.43 -0.5 610,910 - AMB_RS02920 0.43 -0.7 610,910 - AMB_RS02920 0.43 -0.8 610,910 - AMB_RS02920 0.43 +0.0 610,911 + AMB_RS02920 0.43 -0.0 610,911 + AMB_RS02920 0.43 -1.1 610,912 - AMB_RS02920 0.43 -0.7 610,912 - AMB_RS02920 0.43 +1.2 610,912 - AMB_RS02920 0.43 -0.6 610,988 - AMB_RS02920 0.46 +0.4 611,179 + AMB_RS02920 0.53 -1.0 611,179 + AMB_RS02920 0.53 -0.2 611,180 - AMB_RS02920 0.54 -0.8 611,182 + AMB_RS02920 0.54 -1.1 611,182 + AMB_RS02920 0.54 -0.4 611,183 - AMB_RS02920 0.54 +0.0 611,271 + AMB_RS02920 0.57 +0.3 611,271 + AMB_RS02920 0.57 -0.2 611,271 + AMB_RS02920 0.57 +0.4 611,271 + AMB_RS02920 0.57 -0.4 611,271 + AMB_RS02920 0.57 +0.1 611,271 + AMB_RS02920 0.57 -0.6 611,272 - AMB_RS02920 0.57 -0.4 611,272 - AMB_RS02920 0.57 -1.0 611,272 - AMB_RS02920 0.57 -0.6 611,406 + AMB_RS02920 0.63 -0.1 611,878 + AMB_RS02920 0.82 -0.6 611,879 - AMB_RS02920 0.82 -0.9 612,065 + AMB_RS02920 0.90 +0.5 612,128 - -0.3 612,319 + +0.8 612,320 - +0.0 612,320 - -1.7 612,320 - -0.2 612,416 + -0.1 612,416 + -0.7 612,533 + AMB_RS02925 0.20 -0.3 612,557 + AMB_RS02925 0.22 +0.1 612,557 + AMB_RS02925 0.22 +0.3 612,558 - AMB_RS02925 0.22 -0.1 612,678 - AMB_RS02925 0.34 -0.2 612,678 - AMB_RS02925 0.34 +0.8 612,839 + AMB_RS02925 0.49 -0.1 613,037 + AMB_RS02925 0.68 +1.0 613,037 + AMB_RS02925 0.68 -0.9 613,037 + AMB_RS02925 0.68 -0.0 613,037 + AMB_RS02925 0.68 -0.5 613,038 - AMB_RS02925 0.68 -0.2 613,038 - AMB_RS02925 0.68 -0.7 613,038 - AMB_RS02925 0.68 -0.2 613,038 - AMB_RS02925 0.68 -0.5 613,038 - AMB_RS02925 0.68 +0.2 613,038 - AMB_RS02925 0.68 +0.2 613,044 - AMB_RS02925 0.69 +0.3 613,181 + AMB_RS02925 0.82 +0.6 613,181 + AMB_RS02925 0.82 +0.1 613,181 + AMB_RS02925 0.82 -0.5 613,182 - AMB_RS02925 0.82 +0.6 613,182 - AMB_RS02925 0.82 -0.7 613,182 - AMB_RS02925 0.82 +1.0 613,182 - AMB_RS02925 0.82 +0.6
Or see this region's nucleotide sequence